In Vitro and In Vivo Evidence towards Fibronectin’s Protective Effects against Prion Infection

A distinctive signature of the prion diseases is the accumulation of the pathogenic isoform of the prion protein, PrPSc, in the central nervous system of prion-affected humans and animals. PrPSc is also found in peripheral tissues, raising concerns about the potential transmission of pathogenic prions through human food supplies and posing a significant risk to public health. Although muscle tissues are considered to contain levels of low prion infectivity, it has been shown that myotubes in culture efficiently propagate PrPSc. Given the high consumption of muscle tissue, it is important to understand what factors could influence the establishment of a prion infection in muscle tissue. Here we used in vitro myotube cultures, differentiated from the C2C12 myoblast cell line (dC2C12), to identify factors affecting prion replication. A range of experimental conditions revealed that PrPSc is tightly associated with proteins found in the systemic extracellular matrix, mostly fibronectin (FN). The interaction of PrPSc with FN decreased prion infectivity, as determined by standard scrapie cell assay. Interestingly, the prion-resistant reserve cells in dC2C12 cultures displayed a FN-rich extracellular matrix while the prion-susceptible myotubes expressed FN at a low level. In agreement with the in vitro results, immunohistopathological analyses of tissues from sheep infected with natural scrapie demonstrated a prion susceptibility phenotype linked to an extracellular matrix with undetectable levels of FN. Conversely, PrPSc deposits were not observed in tissues expressing FN. These data indicate that extracellular FN may act as a natural barrier against prion replication and that the extracellular matrix composition may be a crucial feature determining prion tropism in different tissues.


Introduction
Prion diseases are fatal neurodegenerative disorders that include Creutzfeldt-Jakob disease (CJD) in humans, bovine spongiform encephalopathy (BSE) in cattle, scrapie in sheep, and chronic wasting disease (CWD) in cervids.These diseases are associated with the conversion of the host-encoded prion protein, PrP C , into a misfolded aggregated form, PrP Sc [1].PrP Sc accumulates preferentially in the central nervous system (CNS), but detectable amounts of PrP Sc can also be found in peripheral tissues of prion-infected animals [2,3].Lymphoid tissue and the peripheral nervous system are the major sites involved [4][5][6][7], but PrP Sc is also present in muscle from sheep with scrapie and cervids with CWD [8][9][10].Muscle is of particular concern, given the high rate of human consumption for this type of tissue.Several studies of experimental and natural prion infection have concluded that muscle can be classified as a low infectivity tissue [11], with 5000-fold less infectivity than brain in case of scrapie-infected sheep [8,9].The lower levels of infectivity in muscle and the fact that scrapie and CWD are considered non-zoonotic prion diseases resulted in the exclusion of muscle from specific risk materials seized at the slaughterhouse.
The accumulation of PrP Sc in myocytes of both terminal and preclinical stages of experimentally infected animals has been reported, but detailed histopathological studies demonstrated that PrP Sc was mostly associated with peripheral nerves or neuromuscular junctions rather than with myofibers [12,13].In natural scrapie, we reported that PrP Sc associated with intramuscular nerve fibers and neuromuscular spindles [10].The same affected nerve structures have been described in experimental scrapie [9], human prion diseases [14,15], experimental infections with BSE [16,17] and hamsters inoculated with transmissible mink encephalopathy [18].Thus, in vivo experiments have not shown clear prion deposition in myofibers of striated muscle.The factors that contribute to the inefficiency of muscle cells as a replication and accumulation site for prions remain unknown.
Interestingly, C2C12 myotubes, a muscle-derived cell type that retains most of the features of myofibers, support prion propagation with ten times higher yield than other mammalian cell lines, including the neuroblastoma N2a cell line [19].Although the lack of cell division of myotubes is the most logical explanation for the elevated levels of prion accumulation compared to N2a cells, the highly efficient prion replication in myotubes is surprising considering the low susceptibility of muscle cells to prion infection in vivo.C2C12 is a murine myoblast cell line that undergoes terminal differentiation to myotubes upon serum removal.In addition to myotubes, a subset of cells, called reserve cells, remains undifferentiated [20].Contrary to the high susceptibility of myotubes, reserve cells and myoblasts are resistant to prion infection [21,22].
Here, we used a differentiated C2C12 cell line (dC2C12) to explore the factors that influence susceptibility/resistance in these two muscle cell types.We then evaluated if the same factors are involved in the low susceptibility of muscle and other peripheral tissues to prion infection in vivo.Our studies indicate that proteins from the extracellular matrix play a central role in prion distribution.The negative correlation between PrP Sc deposition and fibronectin (FN) expression observed in dC2C12 reserve cells was also confirmed in different peripheral tissues of naturally infected animals.

PrP Sc Replicates and Accumulates Efficiently in Myotubes but Not in Reserve Cells
Following serum deprivation, murine-derived C2C12 myoblast cells are terminally differentiated into mono-nucleated reserve cells and multi-nucleated myotubes [23].After four days of differentiation, when at least one complete layer of myotubes has formed with reserve cells intermingled (Figure S1), the cultures were exposed to the murine prion strain, RML, or to normal brain homogenate (NBH).In previous studies, de novo generated PrP Sc was detected from day 15 post-infection by immunoblotting [19]; PrP Sc were associated by immunocytochemistry, associated with multi-nucleated cells but not with mono-nucleated cells [21].Here, we examined the entire dC2C12 culture, at 20 days post-infection, through serial scans along the z-axis with double staining immunocytochemistry for the prion protein and desmin, a major intermediate filament protein present in muscle-derived cells (Figure 1).The distribution of PrP Sc was observed across the multilayered culture, present-ing either a-cytoplasmic fine-or coarse-granular staining pattern.Notably, this staining pattern was exclusively associated with myotubes, and the PrP Sc -positive myotubes varied in width, ranging from 5 µm to over 56 µm.Prion infection of dC2C12 influenced cell morphology, with a higher proportion of thin myotubes in RML-infected than in NBH-treated cultures (Figure S2).In contrast to myotubes, all reserve cells were negative for PrP Sc , not only those located at the bottom layers of the culture but also those in close contact with PrP Sc positive myotubes, confirming the different susceptibility of these two types of cells to prion infection.infection, through serial scans along the z-axis with double staining immunocytochemistry for the prion protein and desmin, a major intermediate filament protein present in muscle-derived cells (Figure 1).The distribution of PrP Sc was observed across the multilayered culture, presenting either a-cytoplasmic fine-or coarse-granular staining pattern.Notably, this staining pattern was exclusively associated with myotubes, and the PrP Scpositive myotubes varied in width, ranging from 5 µm to over 56 µm.Prion infection of dC2C12 influenced cell morphology, with a higher proportion of thin myotubes in RMLinfected than in NBH-treated cultures (Figure S2).In contrast to myotubes, all reserve cells were negative for PrP Sc , not only those located at the bottom layers of the culture but also those in close contact with PrP Sc positive myotubes, confirming the different susceptibility of these two types of cells to prion infection.

High Molecular Weight Proteins Co-Purify with dC2C12 PrP Sc and Reduce Its Infectivity
Uninfected myotubes and reserve cells showed similar levels of PrP C by immunoblotting [19], excluding the possibility that PrP C abundance is the primary factor influencing PrP Sc accumulation in dC2C12.
To investigate whether a cellular component of reserve cells could be interfering/inhibiting PrP Sc replication, we compared infectivity of whole dC2C12 lysate (consisting of PrP Sc from myotubes and any potential inhibitory factors from reserve cells) to PrP Sc purified from the same lysate.

High Molecular Weight Proteins Co-Purify with dC2C12 PrP Sc and Reduce Its Infectivity
Uninfected myotubes and reserve cells showed similar levels of PrP C by immunoblotting [19], excluding the possibility that PrP C abundance is the primary factor influencing PrP Sc accumulation in dC2C12.
To investigate whether a cellular component of reserve cells could be interfering/ inhibiting PrP Sc replication, we compared infectivity of whole dC2C12 lysate (consisting of PrP Sc from myotubes and any potential inhibitory factors from reserve cells) to PrP Sc purified from the same lysate.
To obtain highly enriched PrP Sc from dC2C12 cultures, we applied a protocol based on protease digestion of the cell lysate followed by selective precipitation of PrP Sc with phosphotungstic acid (PTA) in the presence of sarkosyl [24].This PTA protocol yielded highly enriched PrP Sc when applied to RML brain homogenate (Figure 2, lane#1).Im-munoblotting analysis of the purified fraction showed the three characteristic PrP Sc bands corresponding to di-, mono-, and un-glycosylated PrP isoforms.Silver staining indicated a purity > 95% for PrP Sc in this preparation.Interestingly, much lower purity was obtained when the protocol was applied to dC2C12 lysate (Figure 2, lanes#3-16).Although PrP Sc was detected by immunoblotting, high levels of high molecular weight (HMW) proteins (>100 kDa) co-purified with PrP Sc (Figure 2, lanes#3-16, silver staining).We tested the effect of different detergents in the lysis buffer on increasing PrP Sc yield and decreasing HMW proteins.Inclusion of sarkosyl yielded the highest amount of PrP Sc although the amount of contaminant protein was also the highest for this condition (Figure 2, lanes#8 and 14).The use of triton X-100-deoxycholate (TD) buffer resulted in a partial reduction of the HMW proteins but to the detriment of the PrP Sc yield (Figure 2, lanes#9 and 15).RIPA buffer yielded similar levels of PrP Sc as TD but with higher levels of contaminant (Figure 2, lanes#7 and 13).These co-precipitated HMW proteins were also highly resistant to protease digestion (100-1000 µg/mL of proteinase K, 100 µg/mL of pronase E and collagenase).Other conditions such as mild to hard clarification spins before or after benzonase treatments, different centrifugation speeds, stringent sonication), precipitation with different concentrations of PTA and high salt concentration extraction, were tested without a significant increase in purity or yield.Aliquots of the RML brain homogenate used to infect dC2C12 culture were processed in parallel in all conditions showing no HMW protein contamination for any of them (treatment with sarkosyl and 100 µg/mL of PK is shown in Figure 2, lane#1).
To obtain highly enriched PrP Sc from dC2C12 cultures, we applied a protocol based on protease digestion of the cell lysate followed by selective precipitation of PrP Sc with phosphotungstic acid (PTA) in the presence of sarkosyl [24].This PTA protocol yielded highly enriched PrP Sc when applied to RML brain homogenate (Figure 2, lane#1).Immunoblotting analysis of the purified fraction showed the three characteristic PrP Sc bands corresponding to di-, mono-, and un-glycosylated PrP isoforms.Silver staining indicated a purity > 95% for PrP Sc in this preparation.Interestingly, much lower purity was obtained when the protocol was applied to dC2C12 lysate (Figure 2, lanes#3-16).Although PrP Sc was detected by immunoblotting, high levels of high molecular weight (HMW) proteins (>100 kDa) co-purified with PrP Sc (Figure 2, lanes#3-16, silver staining).We tested the effect of different detergents in the lysis buffer on increasing PrP Sc yield and decreasing HMW proteins.Inclusion of sarkosyl yielded the highest amount of PrP Sc although the amount of contaminant protein was also the highest for this condition (Figure 2, lanes#8 and 14).The use of triton X-100-deoxycholate (TD) buffer resulted in a partial reduction of the HMW proteins but to the detriment of the PrP Sc yield (Figure 2, lanes#9 and 15).RIPA buffer yielded similar levels of PrP Sc as TD but with higher levels of contaminant (Figure 2, lanes#7 and 13).These co-precipitated HMW proteins were also highly resistant to protease digestion (100-1000 µg/mL of proteinase K, 100 µg/mL of pronase E and collagenase).Other conditions such as mild to hard clarification spins before or after benzonase treatments, different centrifugation speeds, stringent sonication), precipitation with different concentrations of PTA and high salt concentration extraction, were tested without a significant increase in purity or yield.Aliquots of the RML brain homogenate used to infect dC2C12 culture were processed in parallel in all conditions showing no HMW protein contamination for any of them (treatment with sarkosyl and 100 µg/mL of PK is shown in Figure 2, lane#1).
Figure 2. Silver stain and immunoblot analysis of PTA-purified PrP Sc from RML-infected mouse brain and dC2C12 cultures.NBH and RML -infected PTA precipitated samples were lysed with sarkosyl (S), triton deoxycholate (TD) or RIPA buffer, digested with different concentrations of PK and analyzed by SDS-PAGE followed by silver staining (gel on top) or immunoblotting (membrane at the bottom).High molecular weight (HMW) proteins > 100 kDa were found under all purification conditions for dC2C12 samples as shown by silver staining.PrP Sc from brain and dC2C12 cultures was detected by western blotting, whereas only PrP Sc from brain was visualized with silver staining.
Figure 2. Silver stain and immunoblot analysis of PTA-purified PrP Sc from RML-infected mouse brain and dC2C12 cultures.NBH and RML -infected PTA precipitated samples were lysed with sarkosyl (S), triton deoxycholate (TD) or RIPA buffer, digested with different concentrations of PK and analyzed by SDS-PAGE followed by silver staining (gel on top) or immunoblotting (membrane at the bottom).High molecular weight (HMW) proteins > 100 kDa were found under all purification conditions for dC2C12 samples as shown by silver staining.PrP Sc from brain and dC2C12 cultures was detected by western blotting, whereas only PrP Sc from brain was visualized with silver staining.SAF83 dil.1:10,000 was used to detect PrP.Arrowheads indicate the migrating position of PrP glycoforms.
We then evaluated the infectivity of the whole dC2C12 lysate (in TD lysis buffer) and its PTA-purified PrP Sc (Figure 2, lane#9) by standard scrapie cell assay (SSCA) [25] (Figure 4A).We used PrP Sc purified from the identical volume of dC2C12 lysate that was used in the whole lysate SSCA experiment.The infectivity of PTA-purified PrP Sc was notably higher (439.3+/− 125.3 spots/20,000 cells; mean +/− SD) compared to the infectivity of the entire dC2C12 lysate (283.6 +/− 62.5 spots/20,000 cells; mean +/− SD).Various factors could contribute to this difference, including potential alterations in the properties of PTA-precipitated prions or the presence of inhibitory factor(s) influencing prion replication in dC2C12 cell cultures, among other possibilities.
To evaluate the influence of HMW proteins on PrP Sc infectivity, we initiated the process by separating HMW proteins from PrP Sc through velocity gradient centrifugation.This size-based separation enabled us to acquire fractions that contained both PrP Sc and HMW proteins, alongside other fractions that exclusively contained PrP Sc , either free of HMW proteins or with levels below the limits of detection.Given that detergents influence the aggregation state of the PrP Sc , and thus their mobility in the gradient [26], we treated infected dC2C12 cells and brain homogenate with sarkosyl or TD lysis buffers.The solubilized samples were PK digested, loaded on top of an iodixanol gradient and, after centrifugation, fourteen fractions were collected and analyzed by SDS-PAGE, silver staining and immunoblotting (Figure 3).In agreement with Tixador et al. [26], the detergent used for solubilization of RML-infected brain homogenate influenced migration of PK resistant PrP (PrP res ), with the PrP res signal in the top half of the gradient when sarkosyl was used (Figure 3A, left) and in the bottom half when the sample was solubilized with TD (Figure 3A, right).Unlike PrP res , the HMW proteins were present in the top fractions regardless of the detergent used, but very little was found in brain homogenate compared to the dC2C12 samples.Thus, TD solubilized samples yielded purer PrP res in fractions #9-13 (Figure 3A    Surprisingly, PrP res from dC2C12 cultures migrated in the bottom half of the gradient with both detergents (Figure 3B).In sarkosyl-solubilized dC2C12 samples, PrP res was distributed more broadly, from fractions #7 to #14, along the gradient, whereas, in the TD solubilized samples, PrP res was detected in fractions #9 to #12.Interestingly, in both conditions, the fraction with higher PrP res signal (fraction #14 for sarkosyl and fraction #12 for TD) also had the highest amount of HMW contaminant proteins, suggesting a physical Surprisingly, PrP res from dC2C12 cultures migrated in the bottom half of the gradient with both detergents (Figure 3B).In sarkosyl-solubilized dC2C12 samples, PrP res was distributed more broadly, from fractions #7 to #14, along the gradient, whereas, in the TD solubilized samples, PrP res was detected in fractions #9 to #12.Interestingly, in both conditions, the fraction with higher PrP res signal (fraction #14 for sarkosyl and fraction #12 for TD) also had the highest amount of HMW contaminant proteins, suggesting a physical interaction between these two proteins.In addition, fractions #9 to #11 for sarkosyl and fractions #10 to #11 for TD, contained purer PrP res .The evaluation of the fractions with by revealed an inhibitory effect of the co-migrating HMW proteins on PrP Sc infectivity (Figure 4B).The TD-treated samples showed that fraction #11, which contained pure PrP res , infected the L929 cells with 320 spots/20,000 cells.However, the subsequent fraction, #12, with a higher concentration of PrP res and most of the HMW proteins, was very inefficient at infecting the L929 cells, with fewer spots than the threshold of 150 spots/20,000 cells, indicating an inhibitory effect of the HMW proteins in prion replication.The experiment was performed in triplicate confirming these results.None of the fractions from the sarkosylsolubilized sample showed infectivity in SSCA.This could be attributed to a higher dilution of PrP res along the gradient compared to the TD-solubilized sample.

Extracellular Matrix Proteins Co-Precipitate and Co-Migrate with PrP Sc from dC2C12
We next identified the HMW proteins that co-precipitated and co-migrated wi PrP res and inhibited its infectivity.The bands larger than 100 kDa detected by silver stai ing after PTA precipitation or gradient centrifugation were analyzed by mass spectrom  3B).In all cases, dC2C12 cells were lysed in TD buffer.Dotted line represents the cut off threshold for prion infection.Average ± SE was plotted.*, p < 0.05; **, p < 0.01;***, p < 0.001.Mock, uninfected dC2C12 lysate.

Extracellular Matrix Proteins Co-Precipitate and Co-Migrate with PrP Sc from dC2C12
We next identified the HMW proteins that co-precipitated and co-migrated with PrP res and inhibited its infectivity.The bands larger than 100 kDa detected by silver staining after PTA precipitation or gradient centrifugation were analyzed by mass spectrometry.Fibronectin (FN), collagen and fibrillin, three proteins typically present in the extracellular compartment, were the most prevalent proteins.Table 1 shows the HMW proteins identified by mass spectrometry in two fractions shown in Figure 3.The mass spectrometry results were validated by immunoblotting (Figure 5A).Table 1.HMW proteins detected by mass spectrometry.
Fraction 14 of Sedimentation Velocity Gradient from C2C12 in Sarkosyl (Figure 3) Accession Description Percentage of Contamination Electron microscopy of fractions containing purer PrP res (fractions #13 for sarkosyl and #11 for TD) showed typical prion rod structures when sarkosyl was used but more blob-like structures when TD was used (Figure 5B,C).In PTA-precipitated samples, these prion rod structures were present but mostly intermingled with other fibrillar structures with the characteristic striated ultrastructure of collagen (Figure 5D).Unfortunately, FN is undetectable by conventional negative staining [27].Arbitrary LOD threshold value applied for graphical representation.

FN Negatively Correlates with PrP Sc in dC2C12 Cultures
The distribution of FN, one of the proteins present it the HMW bands as suggested by immunoblot, was analyzed by immunocytochemistry in dC2C12 cultures.At day 20 post-differentiation in NBH-treated dC2C12 cultures, the immunocytochemistry showed FN staining as a filamentous mesh-like pattern (Figure 6A).The FN staining was intense in areas with an abundance of reserve cells, while areas with a predominance of myotubes had no or very faint FN staining, likely just background from lower layers.The same FN pattern was observed in RML-infected dC2C12 cultures.Interestingly, an inverse correlation between PrP Sc and FN staining was observed.Areas with intense FN staining were completely devoid of PrP Sc and, conversely, areas with PrP Sc showed very low or no FN staining.Based on cell morphology, the areas with low FN staining and intense PrP Sc punctate were associated with myotubes, while intense fibrillary patterns of FN and an absence of PrP Sc co-localized with reserve cells (Figure 6B).The amount of FN decreased from day 7 to 14 post-differentiation (Figure 7A) indicating changes in FN expression during the maturation of the culture.Immunoblotting analysis showed no significant differences in the levels of FN between NBH and RML-infected dC2C12 cultures at day 20 (Figure 7B), suggesting that RML infection did not affect FN metabolism.

FN Does Not Interact with PrP C
An interaction between FN and PrP C may hide the substrate for PrP Sc replication explaining the resistance of reserve cells to prion infection.We used chemical crosslinking to study this interaction.After treating NBH-infected dC2C12 cultures with 2% formaldehyde, the samples were analyzed by immunoblotting.Signal for PrP C was detected at the size corresponding to PrP monomers but also at 150-250 kDa (Figure S3).These HMW bands disappeared with temperature cross-linking reversion.The intensity of the signal for monomeric PrP C after reversion was almost the same as the addition of the signals for monomeric and complexed PrP C before boiling of the sample.The primary interactor of PrP C at day 10 post-differentiation was neural cell adhesion molecule (NCAM) (Figure S3) as previously described [28].Immunoblot of cross-linked samples with anti-NCAM antibody showed bands at the same positions as PrP C , between 150 and 250 kDa.These bands also disappeared by boiling the sample for 5, 15 and 30 min (Figure S3).Finally, we evaluated the In vitro interaction of recombinant PrP (recPrP) with different aggregation states of purified FN by surface plasmon resonance.FN aggregates were generated under various conditions of agitation and temperature, and the aggregation state was determined by dynamic light scattering.None of the FN preparations (monomeric, 240 kDa; dimeric, 420 kDa; tetrameric, 714 kDa; and fibrillar) showed binding to recPrP (Figure S4).

Dexamethasone Treatment Renders Reserve Cells Permissive to Prion Infection
To confirm that the rich FN matrix present in reserve cells is responsible for their refractory status to prion infection, dC2C12 cultures were exposed to dexamethasone.This corticosteroid induces atrophy in myotubes [29][30][31][32] by decreasing protein synthesis and increasing the rate of protein catabolism [29,31,33] rendering a culture enriched in reserve cells (Figure 8A).Transcription factors regulating myogenic differentiation were examined by immunoblotting analysis.The expression of MyoD (a myogenic regulatory factor) and Pax7 (a paired box transcription factor) were decreased by dexamethasone treatment regardless of prion infection (Figure 9A).This myogenic inhibition by dexamethasone supports the immunocytochemical observation of myotube atrophy in the differentiated C2C12 culture shown in Figure 8.
Upon infection, dexamethasone-treated cultures showed PrP Sc in relation to mononucleated cells with morphologies resembling reserve cells.The pattern of PrP staining changed from fine-punctate or diffuse in non-dexamethasone cultures to thick intracytoplasmatic granules or coalescing aggregates surrounding the nucleus in dexamethasoneexposed cultures (Figure 8).Some shrunken myotubes that also displayed PrP Sc were still present.Immunoblotting analysis revealed an increase in total PrP Sc signal concomitant with a decrease in the FN levels in dexamethasone -RML treated cultures (Figure 9A); the decrease in FN also appeared in dexamethasone NBH cultures and was significant at two different time points (10 and 20 days post-inoculation; Figure 9B).Unlike FN, there were no changes in other extracellular matrix proteins like collagen and vitronectin.The increased PrP Sc signal after dexamethasone treatment, even at the two different time-points, was not correlated with any increase in the total PrP.In fact, the total PrP levels decreased (Figure 9A).

Looking for PrP Sc and FN in Tissues from Naturally Infected Sheep
We then investigated whether the inverse correlation between FN and PrP Sc deposits observed in vitro, using a mouse-adapted RML prion strain, was also present in vivo, specifically with natural ovine scrapie.In a previous study, we examined the extent, location and pattern of PrP Sc deposition in several tissues from naturally infected scrapie sheep [10].We further analyzed those samples to determine the distribution of FN in relation to PrP Sc deposition, specifically in muscle tissues and in the targeted tissues of major prion diseases: CNS, enteric nervous system and adrenal gland.PrP Sc and FN immunodetection was performed on serial sections of tissues by immunohistochemistry.
Three different types of muscles were examined: skeletal, cardiac striated and smooth muscle.In skeletal muscle, FN immunostaining was detected at the endomysium as a fine punctuate stain that sheathed each individual myofiber; no PrP Sc was found associated with myofibers (Figure 10A,B) as previously described [9].The presence of FN at the endomysium also appeared in smooth muscles from the digestive tract.The spindle-shaped cells from the muscularis propria of the digestive wall were enclosed by a FN-positive sheath of endomysium and were negative for PrP Sc (Figure 10C,D).PrP Sc in these samples was associated with the enteric nervous system, largely at the myenteric plexus, between the longitudinal and circular layers of the muscularis, consisting of ganglia interconnected by bundles of nerve fibers.In these ganglia, neural and glial elements were densely packed with scarce extracellular space that was negative for FN (Figure 10E,F).However, as previously reported [34], the perineurium surrounding each PrP Sc positive ganglion was positive for FN (Figure 10E, asterisk), which would constitute a physical barrier from the adjacent smooth muscle layers, maintaining the negative correlation of FN and PrP Sc in the gastrointestinal wall.In contrast to the skeletal and smooth muscle, no immunostaining for FN was observed in the myocardium, suggesting that the protein composition of the cardiac endomysium differs from that of other types of muscle (see Figure S5A).Furthermore, immunohistochemical analysis revealed a lack of PrP Sc in this tissue (see Figure S5B).
As expected, no FN was detected in the CNS tissue sections examined (Figure 10G,H) [35].However, the lumen of the vessels was positive for FN staining due to the antibody recognizing indistinctly soluble (plasma) and insoluble (cellular) FN.This staining of soluble FN appeared in vessels for all the tissues examined.In addition, transverse sections of the vessels had clear FN staining as circular patterns in the connective tissue of tunica intima (subendothelial) and tunica adventitia (Figure 10I,J).
Apart from the central and peripheral nervous tissues, the adrenal gland was also examined as it is positive for PrP Sc in all major prion disorders (scrapie, BSE, CWD, CJD) [36][37][38][39].FN staining was found in all intercellular spaces of the cells in the adrenal cortex, whereas in the medulla, chromaffin cells lacked any intercellular FN staining.These cells were scattered in clusters and FN staining was present around the clusters, but not within (Figure 10K).Again, there was an inverse correlation between FN and PrP Sc .In the adrenal cortex, the highest intercellular FN immunostaining was detected with no PrP Sc deposits.PrP Sc was restricted to within the clusters of chromaffin cells either at nerve fibers/endings or as intracytoplasmic deposits in chromaffin cells [40] where no FN was present (Figure 10L).
In scrapie, the lymphoid tissue is of particular interest, while in other prion disorders like BSE, this tissue is not or minimally involved in prion pathogenesis.In general, mild diffuse FN labelling was observed in the medulla of the lymph nodes, none coexisting with PrP Sc that was instead located in primary/secondary follicles of the lymph node cortex (Figure S5C,D).

Prion Tropism in Reserve Cells and Myotubes
The accumulation of PrP Sc in striated muscle tissue of prion-infected animals is associated with nerve structures rather than myofibers [10,[12][13][14][15], suggesting that there is an inefficient environment for prion replication and/or accumulation in this cell type.Conversely, myotubes, the myofiber counterpart in dC2C12 cell culture, become susceptible to prion infection when they mature from their prion-resistant myoblast precursors.In addition to myotubes, dC2C12 culture also contain reserve cells that remain undifferentiated and prion resistant [21,22,41] Here, we explored the cellular factors that account for the different prion susceptibility of these two muscle cell types.
We identified FN, fibrillin and collagen as co-purifying proteins with PrP Sc from dC2C12 culture.The consistent co-precipitation and co-migration of these structural proteins with PrP Sc under a wide range of experimental conditions strongly suggests their interaction.In addition, these co-purifying proteins reduced PrP Sc infectivity in SSCA.Immunocytochemical analysis of infected dC2C12 cultures showed an inverse correlation between FN and PrP Sc deposition, with high levels of FN at extracellular compartment surrounding prion-resistant reserve cells and low levels surrounding prion-susceptible myotubes.This supports the hypothesis that these proteins interfere with prion replication.

Prion Tropism in Reserve Cells and Myotubes
The accumulation of PrP Sc in striated muscle tissue of prion-infected animals is associated with nerve structures rather than myofibers [10,[12][13][14][15], suggesting that there is an inefficient environment for prion replication and/or accumulation in this cell type.Conversely, myotubes, the myofiber counterpart in dC2C12 cell culture, become susceptible to prion infection when they mature from their prion-resistant myoblast precursors.In addition to myotubes, dC2C12 culture also contain reserve cells that remain undifferentiated and prion resistant [21,22,41] Here, we explored the cellular factors that account for the different prion susceptibility of these two muscle cell types.
We identified FN, fibrillin and collagen as co-purifying proteins with PrP Sc from dC2C12 culture.The consistent co-precipitation and co-migration of these structural proteins with PrP Sc under a wide range of experimental conditions strongly suggests their interaction.In addition, these co-purifying proteins reduced PrP Sc infectivity in SSCA.Immunocytochemical analysis of infected dC2C12 cultures showed an inverse correlation between FN and PrP Sc deposition, with high levels of FN at extracellular compartment surrounding prion-resistant reserve cells and low levels surrounding prion-susceptible myotubes.This supports the hypothesis that these proteins interfere with prion replication.
Interestingly, induction of myotube atrophy and reduction of FN levels by treatment with dexamethasone made reserve cells permissive to prion infection.This further suggests that these structural proteins (normally found in systemic ECM), especially FN, protect from prion infection through direct or indirect interaction with PrP Sc .The atrophic status of myotubes treated with dexamethasone was also confirmed by expression levels of transcription factors regulating myogenic differentiation, MyoD and Pax7.MyoD, a skeletal muscle-specific transcription factor, is crucial for the balance between proliferation and withdrawal from the cell cycle, resulting in terminal differentiation or quiescence [20,42].MyoDpositive cells align and fuse to form multi-nucleated myotubes, while MyoD-negative cells remain undifferentiated and mono-nucleated (reserve cells) [43].Pax7, a paired box transcription factor, is a marker for reserve cells in the activated and proliferative states and plays a role in the maintenance of reserve cell pool [44].A cross-inhibitory interaction between MyoD and Pax7 affect cell fate determination [45].Since activated reserve cells, which are proliferating and differentiating, co-express MyoD with Pax7 [44,46,47], the reduction in both MyoD and Pax7 detected in the differentiated C2C12 culture (Figure 9A) might indicate that myotube atrophy was initiated partially by inactivation of reserve cells from the myogenic regeneration processes.
Several studies have indicated that myoblasts, which are resistant to prion infection [22,41], synthesize and organize FN in a rich surface-associated matrix that is lost in myotubes during differentiation [48,49].In dC2C12 cultures, the myotube formation requires a switching of the cell-extracellular matrix interaction that involves the degradation of 90% of FN by membrane-type 1 matrix metalloproteinase (MT1-MMP) during the elongation phase [46].Our immunocytochemistry results show that in dC2C12 culture, reserve cells, like myoblasts, display this rich FN surface-associated matrix whereas myotubes do not.
GPI-anchored proteins, such as PrP C , can perform signaling roles integrating the extracellular matrix with the cytoskeleton.For instance, binding of PrP C to extracellular matrix protein laminin was reported to induce neurite maintenance and neuronal differentiation [50,51] and high affinity interaction with vitronectin supports axonal growth [52].An interaction of FN with PrP C could result in a protective role by sequestering the substrate for PrP Sc replication, similar to the inhibitory effect on prion replication in vivo caused by anti-PrP monoclonal antibodies [53].However, as previously reported, we observed no evidence of a direct FN-PrP C interaction [52].
Our results provide additional evidence that extracellular matrix proteins play a crucial role in cellular permissibility to prion infection.Transcriptomic analysis of prion-resistant revertant cells in comparison with their susceptible counterparts identified a gene network for extracellular matrix components affecting prion replication in vitro [54,55].In particular, a rich FN extracellular matrix was characteristic of the inhibitory phenotypic state for prion replication in N2a cell culture [55].Susceptible N2a subclones had low FN expression levels whereas resistant subclones overexpressed this protein.As we observed in dC2C12 culture, confocal images of the susceptible N2a culture showed an inverse correlation between FN and PrP Sc , and silencing FN expression augmented the rate of prion replication [55,56].

Fibronectin and Prion Accumulation in Muscle
It is noteworthy that, in contrast to in vitro myotubes that replicate prions very efficiently [41], myofibers, their natural counterparts, do not appear to replicate prions in muscle tissue of natural disease.Interestingly, intramuscular inoculations of prions in transgenic mice corroborates the capability of myofibers to produce high titers of nascent prions [57] suggesting that extracellular factors play a significant role in maintaining the resistant status of myofibers in vivo.In the context of our findings, this prion resistance observed in vivo could be related to the presence of a thin pericellular layer of FN in the extracellular matrix that surrounds myofibers in muscle (endomysium) acting as a physical barrier against PrP Sc , that is absent in dC2C12 myotubes [58,59].Different locations of nuclei in myotubes and myofibers may account for the differences in FN content between these two types of cells.The deposition of extracellular FN at the periphery of myofibers triggers the peripheral positioning of their nuclei, in close contact with the plasma membrane [60], whereas the central position of the nuclei in myotubes may be a consequence of the lack of pericellular FN.In addition to the pericellular FN matrix, there are numerous structures of connective tissue interposed between the entry points of prions to muscle, the neuromuscular spindles and nerve fascicles [9,10,61] and the myofibers.Specifically, myofibers are mantled by up to three layers of ECM: endomysium, perimysium and epimysium.Therefore, prions from nerve fascicles need cross at least two of the layers, perimysium and endomysium, to reach the cells, bearing in mind that the nervous structures are confined by their own connective tissue, endoneurium and perineurium.The penetration of prions to myofibers in vivo would then be hindered by a large extension of connective tissue and foremost the FN matrix at the endomysium that is interposed between the prion entry points to the tissue and the myofibers.
We found an inverse correlation between FN and PrP Sc accumulation in the three types of muscle examined as well as in other tissues from a natural model of prion disease, ovine scrapie.In agreement with the literature [60,62], we confirmed the presence of a robust FN immunostaining in skeletal and smooth muscle but not in cardiac muscle.In the case of cardiac muscle, the literature describes the presence of low levels of FN at the interstitium of the healthy heart [63][64][65] indicating that collagen and elastic fibers are the more abundant fibers.Interestingly, in a previous study [10], we rigorously examined for PrP Sc in cardiac and skeletal muscles, detecting an unexpected proportion of hearts that were positive by ELISA (4/16), whereas no skeletal striated muscles (0/16) were positive this technique.Immunohistochemical examination of those hearts showed, for the first time a few dots of PrP Sc at intercellular spaces.In addition to our results from scrapie-infected animals Jewell JE; et al. 2006 reported the detection of PrP Sc in cardiac muscle of two species of cervid with CWD (7/18) describing linear patterns along the edge of muscle cells [66].Morphologically, the cardiomyocytes are more similar to dC2C12 myotubes than skeletal myofibers.Cardiomyocytes, which have central nuclei like myotubes, might be devoid of a rich FN endomysium, thus explaining the PrP Sc positive hearts.
Like skeletal muscle, smooth muscle cells remain negative for PrP Sc despite their close proximity to PrP Sc positive nervous structures.Among the two layers of smooth muscle in the gastrointestinal wall, run the myenteric and submucosal plexi, which show abundant PrP Sc accumulation.The intestinal plexi belong to enteric nervous system, through which the prions transit and reach the CNS after oral exposure.Thus, we hypothesize that, along the digestive tract, the smooth muscle layers of the wall remained negative because the FN at basal lamina of each individual myocyte and at perineurium surrounding the plexi may provide a barrier that prevents the spreading of prions between layers.

Fibronectin and Prion Accumulation in Nervous System and Other Peripheral Tissues
The CNS harbors the vast majority of prion infectivity, lesions and PrP Sc accumulation in all prion disorders.As expected, our immunohistochemical examination of the CNS from scrapie-infected animals confirmed high levels of PrP Sc and undetectable levels of FN.The extracellular matrix in brain has a different composition than the systemic extracellular matrix [67], being richer in proteoglycans with minimal amounts of FN and collagen [68][69][70].The peripheral nervous system, the primary tissue for neuroinvasion in acquired prion disorders, typically lacks FN in mature stages, except during injury or regeneration [71].Interestingly, in both the CNS and peripheral nervous system, FN is the fibrillar protein present at developing stages and replaced by laminin at maturation; these changes, in extracellular matrix composition [71][72][73] would favor prion replication.
In vCJD CWD, and scrapie, prion replication in lymphoid organs such as gut-associated lymphoid tissue, lymph nodes and spleen, is necessary for effective neuroinvasion [74][75][76][77].The lymphoid tissue examined in our study, whether lymph nodes or mucosa-associated lymphoid tissue, revealed PrP Sc positive lymphoid follicles primarily at the light zone of the germinal center, whereas the mantle and interfollicular areas, expressing more FN, were devoid of PrP Sc .
Apart from nervous and lymphoid tissue, the adrenal gland is the only other tissue that exhibits PrP Sc deposition in all acquired well-studied prion disorders: scrapie, BSE, CWD, vCJD [36,39,40,78].Despite being an endocrine organ, the adrenal medulla is considered a modified neural tissue functioning like a sympathetic ganglion, in fact, medulla and cortex of the adrenal gland differ in their embryonic origin, with a neuroectodermal and mesodermal origin respectively.The different tissue composition of these regions within the organ might explain the distribution of these two proteins, with PrP Sc accumulated in the medulla, and FN, largely concentrated to the cortex.The selective prion presence in the medulla would respond to the FN lacking feature of this nervous region.
Spread of prions through the peripheral nervous system is well recognized, but the hematogenous route may be a parallel or alternative pathway that contributes to the peripheral distribution.However, despite the presence of considerable amounts of infectivity in blood, there is limited contribution of this route to distribution of PrP Sc .We consistently observed linear FN immunostaining surrounding the entire diameter of blood vessels, corresponding to the basal lamina of the endothelia.This may explain the low contribution of the hematogenous route to prion spread compared to dissemination via the peripheral nerves [79].
We believe that the reduction of the glycoprotein FN in the extracellular matrix during the developing nervous system and in C2C12 cultures favors prion replication.In the systemic extracellular matrix, FN polymerizes to higher order fibrils that assemble into an insoluble sticky matrix, limiting prion replication and/or transport.Although other factors may influence prion tropism and spread [80], our results strongly suggest that a rich FN extracellular matrix protects cells from prion infection not only by acting as a physical barrier but also as a biochemical barrier, interacting with PrP Sc and inhibiting its uptake into cells.If we consider that the contact between infectious PrP Sc particles and normal PrP C takes place at the cell surface, an extracellular matrix that does not favor this interaction would be the first barrier against prion replication.These findings provide new insights into prion tropism in different tissues.However, it is essential to note that further studies are needed to explore whether fibronectin can act as a natural barrier with prion strains other than those studied here.
Prion inoculum preparation.C57BL/6 mice were intracerebrally inoculated with RML mouse prions.The animals were euthanized at the clinical stage of the disease.Brains from clinically affected mice were homogenized in phosphate buffered saline (PBS) and centrifuged at 100× g for 5 min to remove cellular debris.Total protein concentration was adjusted to 2 mg/mL based on BCA protein assay (Pierce, Boston, MA, USA, 23235) and samples were stored at −80 • C until use.Animal inoculation studies were performed at the University of Alberta following the Canadian Council on Animal Care guidelines, reviewed by the ACUC-HS, protocol #914)

Measurements of Myotube Widths
Up to 38 myotubes from micrographs at 40× magnification were examined per culture and the width value for each myotubes was calculated as the average of 10 measurements per myosegement; Chi squared equals 22.021 with 4 degrees of freedom.The two-tailed p value equals 0.0002.

PTA Based Purification Protocol
Cell lysates were homogenized by numerous pipetting and digested with Benzonasenuclease (100 U/mL; Sigma-Aldrich, Darmstadt, Germany) before clarification at 500× g for 10 min.The aliquots were frozen at −80 • C until processed.A purification protocol, mainly based on proteinase digestion followed by precipitation with sodium phosphotungstic acid (NaPTA) in the presence of sarkosyl, was performed.The use of NaPTA was adapted from Safar and colleagues [24] as described previously [36].Briefly, thawed aliquots of cell lysates harvested in different lysis buffers were incubated with 2% sarkosyl for 1 h, and subsequently digested with proteinase K or pronase E (100 ug/mL) for 30 min.After stopping the reaction with 2 mM PMSF and 10 mM EDTA, the samples were incubated with 0.3% NaPTA (pH 7.0) for 1 h and centrifuged at 16,000× g at 4 • C for 30 min.The pellet was resuspended in 2% sarkosyl and incubated overnight.Samples were adjusted to 0.3% (w/v) NaPTA and incubated for 1 h, obtaining the final pellet by centrifugation at 1800× g at 4 • C for 30 min.All digestions and incubation were performed at 37 • C with vigorous agitation.

Velocity Sedimentation
The sample fractionation was performed by iodixanol (OptiPrepTM) gradients applying sedimentation velocity techniques as previously described by Tixador et al. [26].Optiprep density gradient medium (Sigma-Aldrich, Darmstadt, Germany) was dissolved in a buffer containing 25 mM HEPES pH 7.4, 150 mM NaCl, 2 mM EDTA, 1 mM DTT, 0.5% sarkosyl to perform the different concentrations of iodixanol, after manually layering, the gradients were allowed to stand overnight at 4 • C to produce the continuous gradient.Gradient linearity was verified by refractometry.Cell lysates or brain homogenates (from 200 to 500 µL and 100 µL, respectively) were layered on a 3.6 mL continuous 12.5-25% iodixanol gradient.The ultracentrifugations were carried out in a swinging-bucket SW-55 rotor using an Optima LE-80K ultracentrifuge (Beckman Coulter, Brea, CA, USA), at 285,000× g 45 min.Finally, the gradients were manually segregated into 14 equal fractions, numbered from top to the bottom, and aliquoted for SDS page, SSCA and electron microscopic analysis.

Statistical Analysis
Statistical analysis for immunoblot results was performed using the independent sample t-test and one-way analysis of variance (ANOVA) followed by post hoc with the least significant difference (LSD) analysis.Statistical analysis of all data was performed using IBM SPSS Statistics version 24 software.

Negative Stain Electron Microscopy
Transmission electron microscopy was performed using a TF20: Tecnai G2 200 kV TEM (FEI) operating at 200 kV.Five µL of sample (no dilution) were adsorbed on freshly glow-discharged 200-mesh formvar/carbon-coated copper grids for 30 s.The grids were washed briefly with 0.1 and 0.01 M ammonium acetate buffer, pH 7.4, and stained with two 50 µL drops of freshly filtered 2% w/v uranyl acetate.The grids were allowed to dry overnight before viewing and the electron micrographs were recorded on FEI Eagle 4K bottom mount CCD camera.A minimum of three different preparations of each condition were examined by TEM, looking at least 5 different areas per grid.
Data-dependent acquisition mode was used to operate the LTQ XL-Orbitrap mass spectrometer, recording mass spectra using external mass calibration (full scan resolution of 60,000 and m/z range of 400-2000).The ten most intense multiply charged ions were sequentially fragmented with collision-induced dissociation, with fragment spectra recorded using the linear ion trap.Following two fragmentations, precursor ions selected for dissociation were subject to 60 s dynamic exclusion.
Raw data files corresponding to an entire gel lane were grouped and processed with Proteome Discoverer 1.4.1.14′ s SEQUEST (Thermo Scientific) search algorithm using a reviewed, non-redundant Mus musculus complete proteome FASTA index (UniprotKB-retrieved October 2014).Search parameters were as follows: event detector mass precision-2 ppm; spectrum selector minimum and maximum precursor masses-350 Da and 5000 Da, respectively, maximum collision energy-1000; input data digestion enzyme-trypsin (full); maximum missed cleavage sites-2; precursor mass tolerance-10 ppm with 0.08 Da fragment mass tolerance; dynamic modifications to peptides-methionine oxidation (+15.995Da), asparagine and glutamine deamidation (+0.984Da); static modifications to peptides-cysteine carbamidomethylation (+57.021Da).Relative extracted ion chromatograms for each identified protein were determined using the 'Precursor Ion Area Detector' node during data processing.Processed data was filtered using a minimum of 2 medium-confidence peptides per protein (FDR < 0.05), and exported to Microsoft Excel 2013 (Microsoft, Redmond, WA, USA) for analysis.

Scrapie Cell Assay
All samples (whole dC2C12 lysates, PTA-purified PrP Sc samples, and the fractions from sedimentation velocity) were methanol precipitated to remove detergents, iodixanol, or other proteases or inhibitors (PMSF).Each fraction (200 µL) was precipitated with 4 volumes of cold methanol for one hour and centrifuged at 16,000× g for 30 min.The supernatant was carefully decanted off the pellet and the pellet air-dried.SSCA was performed as described previously [25], with some modifications.Briefly, L929 cells were exposed to the different PrP Sc fractions resuspended in 100 µL of culture medium; 30 µL was loaded per well, in triplicate, for 5 days in 96-well culture plates.The cells were passaged 3 times (1:4 and 1:7), with 20,000 cells collected at the third passage and loaded on to Multiscreen HTS IP 96-well-0.45µM filter plates (Millipore Burlington, MA, USA).The cells were PK digested (5 µg/mL) followed by denaturation using 3 M guanidine thiocyanate.The Elispot reaction was performed using a mouse anti-PrP antibody (SAF83, 1: 1000) and a goat anti-mouse alkaline phosphatase-conjugated secondary antibody (1: 5000).The plates were developed using BCIP/NBT and analyzed using an Autoimmun Diagnostika GmbH Elispot plate reader (ELR07).

Surface Plasmon Resonance Measurements
Interaction between recombinant PrP and fibronectin was studied using a Biacore X100 system (Biacore, Uppsala, Sweden).Recombinant mouse PrP  was immobilized on a CM5 sensor chip according to manufacturer indications.On average, 300 relative units (RU) of PrP were immobilized.Different aggregation states of fibronectin, with a total protein concentration of 50 µM, were injected in running buffer (10 mM HEPES, 150 mM NaCl, 50 µM EDTA, 0.05% [vol/vol] surfactant P20).Fibronectin samples were injected for 70 s at a flow rate of 20 µL/min and the dissociation rate was monitored for 20 s.

Immunohistochemistry for PrP and FN in Paraffin Tissues
Tissues collected from naturally scrapie-infected and control sheep were formalinfixed and paraffin-embedded for immunohistochemical examination.Serial tissue sections (4 µm) assessed as previously described for PrP Sc [10] and for FN detection.For PrP Sc detection, briefly, sections were pre-treated with 98% formic acid, proteinase K (4 µg/mL; F. Hoffmann La Roche Ltd., 211, Wurmisweg, Switzerland) and by heating at 96 • C for 20 min in EnVisionTM FLEX Target Retrieval solution.Then, tissue sections were incubated with a blocking reagent and immunolabeled using an automated immunostainer.Sections were incubated with an L42 primary antibody (0.046 µg/mL; R-Biopharm, Darmstadt, Germany) at room temperature for 30 min.EnVision was used as a visualization system and diaminobenzidine as the chromogen.For FN, sections were incubated with anti-FN pAb (Abcam, ab2413) using the protocol described above except only heating tissue sections in EnVisionTM FLEX Target Retrieval solution was performed.Finally, sections were counterstained with hematoxylin.Unless stated otherwise, all products were obtained from Dako (Denmark A/S, Glostrup, Denmark).

Figure 1 .
Figure 1.Prion deposition is associated with myotubes in RML-infected dC2C12 cultures at 20 days post-inoculation.Cultures were immunohistochemically stained with SAF83 anti-PrP Ab (red), antidesmin Ab (green) and DAPI (blue).Four serial micrographs taken along the Z -axis show the multilayer culture composed of 2 morphologically different cell types, the long multi-nucleated myotubes (MT) abundant in the upper layers (Z3, Z4) and the mono-nucleated spindle-shape reserve cells (RC), mostly in the bottom layers (Z1, Z2).PrP Sc immunostaining appears as fine intracytoplasmic punctae (yellow arrowheads) solely in myotubes with no PrP Sc deposits found in reserve cells.Interval of the confocal Z-stack images is 0.5 µm.Scale bar, 20 µm.PrP Sc signals in reserve cellsenriched (Z1) and myotubes-enriched layers (Z4) were quantified by measuring mean pixel intensity and coefficient of variation of punctate red fluorescent signals (right panels).Statistical significance was set at p < 0.01 (**) and p < 0.001 (***) in an unpaired t test.

Figure 1 .
Figure 1.Prion deposition is associated with myotubes in RML-infected dC2C12 cultures at 20 days post-inoculation.Cultures were immunohistochemically stained with SAF83 anti-PrP Ab (red), anti-desmin Ab (green) and DAPI (blue).Four serial micrographs taken along the Z-axis show the multilayer culture composed of 2 morphologically different cell types, the long multi-nucleated myotubes (MT) abundant in the upper layers (Z3, Z4) and the mono-nucleated spindle-shape reserve cells (RC), mostly in the bottom layers (Z1, Z2).PrP Sc immunostaining appears as fine intracytoplasmic punctae (yellow arrowheads) solely in myotubes with no PrP Sc deposits found in reserve cells.Interval of the confocal Z-stack images is 0.5 µm.Scale bar, 20 µm.PrP Sc signals in reserve cells-enriched (Z1) and myotubes-enriched layers (Z4) were quantified by measuring mean pixel intensity and coefficient of variation of punctate red fluorescent signals (right panels).Statistical significance was set at p < 0.01 (**) and p < 0.001 (***) in an unpaired t test. right).

Figure 3 .
Figure 3. Silver staining and immunoblotting of fractions from velocity gradients.RML-infected mouse brain homogenate (A) and dC2C12 culture (B) were lysed in sarkosyl (left) or TD (right) buffer, PK digested, and the proteins were fractionated by velocity gradient centrifugation in an iodixanol gradient.The presence of HMW proteins (arrowhead, >100 kDa) was evaluated by silver staining and PrP Sc by immunoblotting (SAF83, dil.1:10,000) in the 14 fractions collected from top (fraction in lane 1) to bottom (fraction in lane 14).

Figure 3 .
Figure 3. Silver staining and immunoblotting of fractions from velocity gradients.RML-infected mouse brain homogenate (A) and dC2C12 culture (B) were lysed in sarkosyl (left) or TD (right) buffer, PK digested, and the proteins were fractionated by velocity gradient centrifugation in an iodixanol gradient.The presence of HMW proteins (arrowhead, >100 kDa) was evaluated by silver staining and PrP Sc by immunoblotting (SAF83, dil.1:10,000) in the 14 fractions collected from top (fraction in lane 1) to bottom (fraction in lane 14).

Figure 5 .
Figure 5. Confirmation of extracellular matrix proteins by immunoblotting and presence of prionlike rods confirmed by electron microscopy.(A) Immunoblotting of collagen, fibrillin, fibronectin, PrP res and Coomassie blue staining for the fractions of RML-infected dC2C12 cells after velocity gradient centrifugation.(B,C) Fractions from velocity gradients with strong PrP res signal but no HMW bands (following Coomassie staining), were examined by electron microscopy.Prion rods were detected in cells lysed with sarkosyl (B) whereas, following triton X-100 extraction, amorphous aggregates like blobs and oligomers were observed (C).(D) Electron microscopic examination of a PTA-precipitated sample from RML-infected dC2C12 cultures contains a mesh of fibrillar structures, such as collagen (asterisk), in which a prion rod-like structure (arrow) can be distinguished.Scale bar 50 nm.

Figure 5 .
Figure 5. Confirmation of extracellular matrix proteins by immunoblotting and presence of prion-like rods confirmed by electron microscopy.(A) Immunoblotting of collagen, fibrillin, fibronectin, PrP res and Coomassie blue staining for the fractions of RML-infected dC2C12 cells after velocity gradient centrifugation.(B,C) Fractions from velocity gradients with strong PrP res signal but no HMW bands (following Coomassie staining), were examined by electron microscopy.Prion rods were detected in cells lysed with sarkosyl (B) whereas, following triton X-100 extraction, amorphous aggregates like blobs and oligomers were observed (C).(D) Electron microscopic examination of a PTA-precipitated sample from RML-infected dC2C12 cultures contains a mesh of fibrillar structures, such as collagen (asterisk), in which a prion rod-like structure (arrow) can be distinguished.Scale bar 50 nm.

Figure 6 .
Figure 6.Detection of PrP and FN proteins in muscle-derived cells.Immunocytochemical detection of PrP Sc (red) and FN (green) in NBH-treated (A) and RML-infected dC2C12 (B) cultures at day 20 post-inoculation.No co-localization of the two proteins was observed in either the NBH-treated (A) or RML-infected (B) cultures.Nuclei in blue.MT, myotube (delimited by dashed line); RC, reserve cells.Scale bar, 20 µm for the top row and 10 µm in bottom row (corresponding to the boxed section in the top row).

Figure 7 .
Figure 7. Time course of PrP res and FN in dC2C12 cultures.Immunoblot analysis of PrP res and FN at 7 and 14 days post-inoculation show the negative correlation of the presence of these proteins with time.(A) FN decreases from day 7 to 14 in both NBH-treated and RML-infected cultures whereas PrP res increases with time.(B) No differences in FN levels between NBH and RML-infected cultures

Figure 6 .
Figure 6.Detection of PrP and FN proteins in muscle-derived cells.Immunocytochemical detection of PrP Sc (red) and FN (green) in NBH-treated (A) and RML-infected dC2C12 (B) cultures at day 20 post-inoculation.No co-localization of the two proteins was observed in either the NBH-treated (A) or RML-infected (B) cultures.Nuclei in blue.MT, myotube (delimited by dashed line); RC, reserve cells.Scale bar, 20 µm for the top row and 10 µm in bottom row (corresponding to the boxed section in the top row).

26 Figure 6 .
Figure 6.Detection of PrP and FN proteins in muscle-derived cells.Immunocytochemical detection of PrP Sc (red) and FN (green) in NBH-treated (A) and RML-infected dC2C12 (B) cultures at day 20 post-inoculation.No co-localization of the two proteins was observed in either the NBH-treated (A) or RML-infected (B) cultures.Nuclei in blue.MT, myotube (delimited by dashed line); RC, reserve cells.Scale bar, 20 µm for the top row and 10 µm in bottom row (corresponding to the boxed section in the top row).

Figure 7 .
Figure 7. Time course of PrP res and FN in dC2C12 cultures.Immunoblot analysis of PrP res and FN at 7 and 14 days post-inoculation show the negative correlation of the presence of these proteins with time.(A) FN decreases from day 7 to 14 in both NBH-treated and RML-infected cultures whereas PrP res increases with time.(B) No differences in FN levels between NBH and RML-infected cultures

Figure 7 .
Figure 7. Time course of PrP res and FN in dC2C12 cultures.Immunoblot analysis of PrP res and FN at 7 and 14 days post-inoculation show the negative correlation of the presence of these proteins with time.(A) FN decreases from day 7 to 14 in both NBH-treated and RML-infected cultures whereas PrP res increases with time.(B) No differences in FN levels between NBH and RML-infected cultures at day 20 are detected.The detergents used in the homogenization of the lysates yield different amount of FN by immunoblotting, sarkosyl yielding the larger FN signal.

Figure 8 .
Figure 8. Dexamethasone effect on dC2C12 cultures confirms the inverse correlation between prion accumulation and FN.Differentiated C2C12 cultures were treated with dexamethasone (10 µM) at day 7 post-exposure to NBH (A) or RML prions (B).(A,B) Immunocytochemical detection in cultures at 21 days post-inoculation of PrP Sc (in red) and desmin (in green) reveal some atrophic myotubes remaining (indicated by arrowheads) caused by dexamethasone treatment and an abundance of mono-nucleated cells (delimited by dashed line).(B) PrP Sc was observed, for the first time, associated with the mono-nucleated cells as gross particulates.Scale bar, 20 µm for the top row and 10 µm in bottom row (corresponding to the boxed section in the top row).

Figure 8 .
Figure 8. Dexamethasone effect on dC2C12 cultures confirms the inverse correlation between prion accumulation and FN.Differentiated C2C12 cultures were treated with dexamethasone (10 µM) at day 7 post-exposure to NBH (A) or RML prions (B).(A,B) Immunocytochemical detection in cultures at 21 days post-inoculation of PrP Sc (in red) and desmin (in green) reveal some atrophic myotubes remaining (indicated by arrowheads) caused by dexamethasone treatment and an abundance of mono-nucleated cells (delimited by dashed line).(B) PrP Sc was observed, for the first time, associated with the mono-nucleated cells as gross particulates.Scale bar, 20 µm for the top row and 10 µm in bottom row (corresponding to the boxed section in the top row).

Figure 9 .
Figure 9.Protein expression of PrP and extracellular matrix components in dC2C12 at 20 days postinoculation.treated with dexamethasone.dC2C12 culture was exposed to RML prions or NBH, and then, at 7 days post-infection, treated with dexamethasone (10 µM in ethanol) or mock control (0.25% ethanol).The cells were harvested at 20 days post-exposure and analyzed by immunoblotting.Dexamethasone treatment of NBH and RML infected dC2C12 reduces (A) total PrP levels and (B) FN with a concomitant increase in (A) PK-resistant PrP compared with non-dexamethasoneexposed cultures.(A) The expression of MyoD and Px7, myogenic regulatory factors, was reduced while (B) other extracellular matrix (ECM) proteins such as collagen I and vitronectin did not change.Conversely, LRP1, reported to mediate endocytosis of PrP C in neuronal cells, was increased proportionally to the accumulation of PrP res .The immunoblot intensity was normalized by GAPDH loading control.Error bars represent SD. *, p < 0.05 and **, p < 0.01 in comparison with mock treatment control.FN, fibronectin; LRP1, low-density lipoprotein receptor-related protein 1; COL-I, collagen I; VN, vitronectin; GAPDH, Glyceraldehyde 3-phosphate dehydrogenase.

Figure 9 .
Figure 9.Protein expression of PrP and extracellular matrix components in dC2C12 at 20 days post-inoculation.treated with dexamethasone.dC2C12 culture was exposed to RML prions or NBH, and then, at 7 days post-infection, treated with dexamethasone (10 µM in ethanol) or mock control (0.25% ethanol).The cells were harvested at 20 days post-exposure and analyzed by immunoblotting.Dexamethasone treatment of NBH and RML infected dC2C12 reduces (A) total PrP levels and (B) FN with a concomitant increase in (A) PK-resistant PrP compared with non-dexamethasoneexposed cultures.(A) The expression of MyoD and Px7, myogenic regulatory factors, was reduced while (B) other extracellular matrix (ECM) proteins such as collagen I and vitronectin did not change.Conversely, LRP1, reported to mediate endocytosis of PrP C in neuronal cells, was increased proportionally to the accumulation of PrP res .The immunoblot intensity was normalized by GAPDH loading control.Error bars represent SD. *, p < 0.05 and **, p < 0.01 in comparison with mock treatment control.FN, fibronectin; LRP1, low-density lipoprotein receptor-related protein 1; COL-I, collagen I; VN, vitronectin; GAPDH, Glyceraldehyde 3-phosphate dehydrogenase.

Figure 10 .
Figure 10.PrP Sc is inversely correlated with FN in tissues from naturally scrapie-infected sheep.(A,C,E,G,I,K) Immunohistochemical detection of FN and (B,D,F,H,J,L) PrP Sc in serial sections of tissues from naturally scrapie-infected sheep.(A,B) In striated skeletal muscle, fine punctae of FN immunolabelling are observed at the endomysium sheath of the myofibers.(C-F) In smooth muscle layers of the digestive tract, FN is found at basal lamina of each myocyte with PrP Sc restricted to the myenteric plexus, surrounded by a FN-positive perineurium (asterisk).Boxes in (C,D) correspond to areas shown in higher magnification in (E,F).(G,H) The central nervous system shows intense PrP Sc accumulation.(I,J) Blood vessel displayed FN at the basal lamina of endothelium and at the adventitia.(K) The adrenal gland shows FN staining with a diffuse pattern in the entire adrenal cortex at intercellular space (inset: detailed FN intercellular staining); (L) PrP Sc accumulation is associated with chromaffin cells at the adrenal medulla.Scale bar, 50 µm for A, B, E, F; 100 µm for G, H, I, J, K, L and 200 µm for C,D.

Figure 10 .
Figure 10.PrP Sc is inversely correlated with FN in tissues from naturally scrapie-infected sheep.(A,C,E,G,I,K) Immunohistochemical detection of FN and (B,D,F,H,J,L) PrP Sc in serial sections of tissues from naturally scrapie-infected sheep.(A,B) In striated skeletal muscle, fine punctae of FN immunolabelling are observed at the endomysium sheath of the myofibers.(C-F) In smooth muscle layers of the digestive tract, FN is found at basal lamina of each myocyte with PrP Sc restricted to the myenteric plexus, surrounded by a FN-positive perineurium (asterisk).Boxes in (C,D) correspond to areas shown in higher magnification in (E,F).(G,H) The central nervous system shows intense PrP Sc accumulation.(I,J) Blood vessel displayed FN at the basal lamina of endothelium and at the adventitia.(K) The adrenal gland shows FN staining with a diffuse pattern in the entire adrenal cortex at intercellular space (inset: detailed FN intercellular staining); (L) PrP Sc accumulation is associated with chromaffin cells at the adrenal medulla.Scale bar, 50 µm for A, B, E, F; 100 µm for G, H, I, J, K, L and 200 µm for C,D.

Table 1 .
HMW proteins detected by mass spectrometry.