Table S2. List of lncRNAs with a validated function.

This table contains a list of lncRNAs divided into groups depending on their known function. The references to the papers validating the lncRNA function are easily accessible by clicking the numbers near the name of the gene while clicking on the name itself will link to the ncbi page for that gene.

Data has been obtained from the database LncBook[0].


Function
 

Validated lncRNAs
 

ceRNA
 
APF[1], ATB[2][3][4][5], BC032469[6], BGLT3[7], CARL[8], CASC2[9], CAT104[10], CBR3-AS1[11], CCAT1[12][13][14][15][16], CCDC144NL-AS1[17], CD99P1[18], CDKN2B-AS1[19], CDR1-AS[20], CERNA1[21], CERNA2[22], CERNA3[23], CHRF[24][25], CRNDE[26][27], CTB-89H12.4[28], CTD-3080P12.3[6], CYTOR[29][30], DLEU1[31], DUBR[32], FER1L4[33][34], FLJ90757[35], GAS5[36][37][38][39][40], H19[41][42][43][44][45][46][47][48][49][50][51][52][53], HNF1A-AS1[54], HOST2[22], HOTAIR[55][56][57][58][59][60][61][62][63][64][65], HOXA11-AS[66], HULC[67][68][69], KIAA1614-AS1[32], KRASP1[70], LA16c-313D11.11[71], LINC00052[72], LINC00115[73], LINC00161[74], LINC00240[75], LINC00319[76], LINC00882[32], LINC00941[77], LINC00974[78], LINC01234[10], LINC01262[79], LINC01772[80], LINC01826[81], linc-223[82], LINCMD1[83][84], LINC-ROR[85][86][87][88][89][90], lncARSR[91], LNCRI[92][93], lncRNA-ATB[2][3], lncRNA-DLEU1[94], lncRNA-FER1L4[95], lnc-SCA7[96], LOC283663[35], LOC338651[35], MAGI1-IT1[17], MALAT1[97][98][99][100][101][102][103][104][105][106][107][108], MEG3[109][110][111][73][112], MHENCR[113], MIAT[114][115][116][73], MINCR[117], MIR31HG[118], MVIH[119], NCK1-DT[120], NEAT1[121][122][123][124][125], PARAL1[126], PCA3[127], PCAT1[128], PCGEM1[129][130], POIR[131], PTCSC3[132], PTENP1[133][134][135], RMRP[136], RP11-457M11.2[137], RP11-838N2.4[138], RSU1P2[139], SLC26A4-AS1[17], SNHG14[140], SNHG6[141], STXBP5-AS1[10], TGFB2-OT1[142], TMSB4[143], TUG1[144][28][145][146], TUSC7[147][148], UCA1[149][150][151][152][153][154][155][63][156][157], ucoo2kmd.1[158], UFC1[159], Unigene56159[160], XIST[161][162][163][164], ZFAS1[165][166]

Protein Localization
 
7SL[167], MALAT1[168], NEAT1_2[168], POU6F2-AS2[169]

RNAi
 
CDKN2B-AS1[170], MEG3[171], SEC24B-AS1[172]

Splicing Regulation
 
51A[173], ABALON[174], BCYRN1[175], MALAT1[176][177][178][179][180][134][181][182][183], MIAT[184][185], NPPA-AS1[186][178], TPM1-AS[187], uc002yug.2[188], ZEB2-AS1[189]

Transcriptional Regulation
 
116HG[190], 7SK[191][192][193][194][195], 91H[196], AGAP2-AS1[197], AIRN[198], AK294004[199], APOA1-AS[200], APOC1P1-3[201], APTR[202], ASncmtRNAs[203], ATXN8OS[204], B4GALT1-AS1[205], BAALC-AS1[206], BACE1-AS[207], BALR-6[208], BANCR[209], BC041488[43], BCAR4[210][211][212], BDNF-AS[213][214][190], BLACAT1[215], C5T1lncRNA[216], CADM1-AS1[217], CAMTA1-DT[218], CAR Intergenic 10[192], CARD8-AS1[219], CARMN[220], CASC11[221], CCAT1-L[222], CCAT2[223], CCDC26[224], CCEPR[225], CDKN1A-AS1[226], CDKN2B-AS1[227][228][229][230][231][232][233][234][235][236][237][238][239][184][181][240][190][241][242], CFTR-AS1[243], Chaer[244], CISTR[245], COL1A2-AS1[246], CRNDE[247][248], CTBP1-AS[249][250][251][207], CYP4A22-AS1[252], CYTOR[253][254], DACOR1[255], DALIR[256], DANCR[257][258][259][260], DANT1[261], DANT2[261], DBCCR1-003[262], DBET[263], DGCR5[264], DHFR upstream transcripts[265], DHRS4-AS1[266], DILC[267], DISC1FP1[268], DISC2[269], DLEU1[270][271], DLEU2[270][271], DLX6-AS1[272], DQ786243[273], EBIC[274], ELFN1-AS1[275], EMX2OS[276], ERICD[277], Evf2[278], EVI1[279], EWSAT1[280], FALEC[252][281], FAS-AS1[282], FENDRR[283][284][285], FEZF1-AS1[286][286], FGF10-AS1[287], FIRRE[288], FLICR[289], FMR1-AS1[290], FOXCUT[291], FOXD3-AS1[292], FTX[293][294], GAS5[295], GATA3-AS1[296], GClnc1[297], GDNF-AS1[298], GHRLOS[299], GIHCG[300], GNAS-AS1[301], GNG12-AS1[302], GPC3-AS1[303], GPR1-AS[304], GSTT1-AS1[305], H19[306][307][308][309][310][311][312][313][314][315][181][316], HAR1A[317], HAR1B[317], HAS2-AS1[318], HIT[319], HOTAIR[320][321][322][323][324][325][326][327][328][329][330][331][332][333][334][38][335][336][337][338][339][340][341][342][343][344][345][346][347][178][348][135][349][350][351], HOTAIRM1[352], HOTTIP[353][354][355][356][207], HOXA-AS2[357], HOXC-AS1[358], HTTAS_v1[190], HULC[359][360][361][362][363], IFNG-AS1[364][365], IGF2-AS[366], IPW[367], IRAIN[368][369], JADRR[370], JPX[371], KCNQ1OT1[372][373][374], LALR[375], LINC00312[376], LINC00473[377], LINC00570[252], LINC00628[378], LINC00672[379], LINC00673[380], LINC00853[252], LINC00887[381], LINC01081[382], LINC01116[383], LINC01133[384], LINC01158[385], LINC01191[386], LINC01207[387], LINC01562[388], LINC01629[381], LINC02574[389], LINC02575[389], LINC-PINT[390], lincRNA-LALR1[391], lincRNA-p21[134], LINC-ROR[392][393], Lnc34a[394], lnc-DILC[267], lnc-NKX2-3-1[395], LNCPRESS2[396], lncRNA-CD244[305], LncRNA-LALR1[391], lnc-RTN4R-1[395], LNCSRLR[397], LOC100887755[252], LOC389023[214], LRP1-AS[398], LRRC3DN[399], LUADT1[400], LUARIS[401], LUCAT1[402], LUNAR1[403], MAFTRR[404], MALAT1[405][406][407][408][409][410][411][412][413][414][415], MAPT-AS1[416], MEG3[417][418][419][420][421][422], MHRT[423], MIF-AS1[424], MINCR[425][426], MIR2052HG[427], MIR210HG[381], MRUL[428], MYCNOS[429][430], NALT1[431], NBAT1[432][433], NBR2[434][435][435], ncNRFR[436], ncR-PAR[437], NCRUPAR[437], NEAT1[438][439][440], NFIA-AS1[441][442], NKX2-2-AS1[443], NORAD[444], NRAV[445], NRIR[446], PACERR[447], PAN[448][449], PANDAR[450][451][180], PARTICL[452][453], PAUPAR[454][455], PCA3[456][457], PCAT1[458][459][251], PCAT6[252], PCGEM1[460][461], PCNA-AS1[462][463][464], PEG13[465], PICSAR[466], PINCR[467], PINK1-AS[468], PISRT1[469], PLUT[470], POU3F3[385], Ppp1r1b[471], PR antisense transcripts[472], PRINS[473], PRNCR1[474][460], PTCSC2[475], PTENP1[476], PTENP1-AS[476], PTPRJ-AS1[477], PVT1[478][479][480][481][482][483][484], RAD51-AS1[485], RASSF1-AS1[486], RBM5-AS1[487], RMST[488], RNA-a[190], ROCR[489], RP11-359E19.2[43], RRP1B[490], SBF2-AS1[491], SCAANT1[492], SCHLAP1[493], snaR[494], SNHG20[495], SOCS2-AS1[496], SOX2-OT[497][498], SOX9-AS1[489], SPRY4-IT1[499][500], SRA[501][502][348], TARID[503][504], TEX41[505], TH2LCRR[506], THRIL[507], TMPOP2[274], TP53COR1[508][509], TRAF3IP2-AS1[510], TRERNA1[252], TSIX[511], TUG1[512][513][514][515][516], TUNAR[517], TUSC7[518], uc.338[519], uc.345[520], UCA1[521][522][523][524][525][526], UFC1[527], UNMIBC[528], WFDC21P[529], WSPAR[530], WT1-AS[531][532], XIST[533][534][535][536][537], YAM1[538][538], ZFAS1[539][540]

Translational Control
 
BACE1-AS[541][178][542], BCYRN1[543], BTG3-AS1[544], FILNC1[545], HIF1A-AS2[546], LNCPRESS1[547], MALAT1[548], MSNP1AS[549], NORAD[550], PPP1R12A-AS1[551], PVT1[552][553], RBM15-AS1[554], SATB2-AS1[555], SNHG6[556], UCHL1-AS1[168]