Table S3. Interactions between lncRNAs and other molecules.

This table contains a list of human lncRNAs divided into groups depending on their known interactions with DNA, Proteins or other RNA molecules. The references to the papers validating the lncRNA interactions are easily accessible by clicking the numbers near the name of the gene while clicking on the name itself will link to the ncbi page for that gene.

Data has been obtained from the database EVLncRNAs[0].


Binding
 

Co-Expression
 

Regulation
 
RNA-DNA AL121845.1[1], CDKN2B-AS1[2], CYTOR[3], HOTAIR[4][5], KCNQ1OT1[6][7], Khps1[8], MALAT1[9], NEAT1[10], PARTICL[11], RBM5-AS1[12], RNY1[13], UCA1[14], ULK4P2[15], WT1-AS[16] FRLnc1[17], HOTAIRM1[18], MEG3[19] AATBC[20], AC021078.1[21], alpha-280/250[22], BACE1-AS[23], BANCR[24][25], BOK-AS1[26], BRCA1[27], C1orf74[28], CAR Intergenic 10[29], CCDC26[30], CCEPR[31], CDKN2B-AS1[32], DANCR[37], DHFR upstream transcripts[38], DHRS4-AS1[39], EGFR-AS1[40], ENST00000414355[41], FALEC[42], FOXC2-AS1[43], FOXCUT[44], GAS5[45], H19[46], HIF1A-AS1[49], HOTAIR[50], HOTAIRM1[61], HOTTIP[62], HOXA11-AS[66], HOXA-AS[67], HULC[68], IRAIN[69], KCNQ1OT1[70], LINC00261[71], LINC00312[72], LINC00951[73], LINC00964[74], LINC01024[75], LINC01207[76], LINC-ROR[77], Lnc34a[78], lncARSR[79], lncRNA-422[57], lncRNA-AK058803[80], lncRNA-ATB[81], LOC401317[82], LUADT1[83], MALAT1[84], MDC1-AS1[89], MEG3[90], MINCR[94], ncRNACCND1[95], NCRUPAR[96], NRAV[97], OR3A4P[98], PANDAR[99], PCA3[100], PCAT1[101][102], PICSAR[103], PTCSC3[104], PVT1[105], SNCG[108], SNED1[109], SNHG12[110], SPRY4-IT1[111], SRA1[112], TRAF3IP2-AS1[113], TUG1[21], TUNAR[114], TUSC7[115], ZEB1-AS1[116], ZFAS1[117]
  RNA-Protein   Alu lncRNAs[118], AOC4P[119], ASncmtRNAs[120], BCYRN1[121], BCYRN1P2[128], CDKN2B-AS1[32], CTBP1-AS[134], CYTOR[135], DHFR upstream transcripts[38], EWSAT1[136], FENDRR[137], GAS5[138], GSTT1-AS1[141], H19[142], HEIH[146], HOTAIR[50], HOTTIP[62], HOXA-AS2[153], KCNQ1OT1[154], KIR antisense lncRNA[155], LINC01207[76], lincDR1[137], lincGARS[137], lincMLKN1[137], LINC-ROR[156], lincSFPQ[137], lnc13[157], LUADT1[83], MALAT1[158], MEG3[90], MIAT[162], MT1JP[163], ncRNACCND1[112], NEAT1[164], NKILA[171], NRON[172], OIP5-AS1[173], PAN[174], PARTICL[11], PCAT1[175], PCNA-AS1[176], pncRNA-D[177], Prion-associated RNAs[178], PVT1[179][107], RN7SK[180], RN7SL1[204], RRP1B[207], SARCC[208], SPRY4-IT1[209], SRA1[210], TINCR[216], TUG1[137], UCA1[14], WFDC21P[219], WSPAR[220][221], XIST[150] AC100861.1[222], BCYRN1[125], CCAT1[223], CDKN2B-AS1[224], CPS1-IT1[225], DLEU1[226], H19[227], HOTAIR[228], HOTTIP[229], MVIH[230], UCA1[231] AB073614[232], AF339813[233], AFAP1-AS1[234][235], AOC4P[236], APOA1-AS[237], ASncmtRNAs[120], AT102202[238], BACE1-AS[239], BALR-6[240], BANCR[241][242], BRCA1[27], BX647187 [243], CBR3-AS1[244], CCAL[245], CDKN2B-AS1[246][247], DACOR1[248], DANCR[249], DBET[250], DBH-AS1[251], DLEU2[252], DLX6-AS1[253], FALEC[254], FAM30A[255], FENDRR[256], FTX[257], GAS1RR[258], GAS5[167], H19[265], HBB[274], HIF2PUT[275], HNF1A-AS1[276], HOTAIR[50], HOTTIP[285][286], HOXA-AS2[153], HULC[287], IFNG-AS1[291][292], IL7R[293], ILF3[81], LINC00635[294], LINC00668[295], LINC00982[296], LINC01158[297], LINC01426[298], linc-ITGB1[299], LINC-ROR[300], LINK-A[301], lnc-bc060912[302], lnc-DILC[303], LUNAR1[304], MALAT1[305], MEG3[167], MIAT[321], MIR31HG[322][323], MT1DP[324], MT1JP[163], NALT1[325], NBAT1[326], NBR2[327], NCRUPAR[328], NEAT1[329][330], NORAD[331], NRON[332][167], PACERR[333], PCAT5[334], PCOTH[335], POU6F2-AS2[336], PRAL[337], PRINS[338], PVT1[339][340], RAD51-AS1[341], RGMB-AS1[342], RMST[343], RN7SK[344], SAMMSON[352], SFTA3[353], SIRT1-AS[354], SNHG15[355], SRA1[356][215], TP53COR1[357][358], TP73-AS1[359], TSIX[360], TUG1[218][361], TUSC7[362][363], UCA1[364], UCHL1-AS1[371], VIM2P[372], WSPAR[221], XIST[373], ZFAS1[374]
RNA-RNA BACE1-AS[375], BDNF-AS[376][167], CASC2[377], CCAT1[378][379], CD99P1[380], CTD-3080P12.3[381], GAS5[382][264], H19[383], HNF1A-AS1[278], HULC[38], LINC01613[380], lncARSR[79], LOC100129973[386], MALAT1[387], MVIH[388], NUTF2P3[389], PCGEM1[390], PINK1-AS[391], RN7SL1[167], SIRT1-AS[392], TGFB2-OT1[393][394], TUSC7[363], UCA1[395], ZFAS1[117] ATXN8OS[397], BACE1-AS[375], C5T1lncRNA[398], CADM1[399], CDKN2B-AS1[132], CDR1-AS[400], CYP4A22-AS1[401], DLEU1[226], EMX2OS[402], FALEC[403], FTX[257], H19[404], HOTAIR[407], HOTAIRM1[132], HOTTIP[132][408], HOXA11-AS[409], LINC00570[401], LINC00853[401], LINC00974[410], LINC01612[411], LSINCT5[412], MEG3[413], ncRNA-a6[401], NUTF2P3[389], PCAT1[175], PCAT6[401], PRINS[414], PTENP1[415], RBM4[416], RBM5-AS1[12], SRA1[417][213], XLOC_010235[411], ZEB2-AS1[418] asOct4-pg5[419], B4GALT1-AS1[420], BACE1-AS[239][375], BANCR[241], BCYRN1[127], CADM1[421], CYP4A22-AS1[403], EGFLAM-AS1[422], EMX2OS[423], FAS-AS1[424], FER1L4[425], FOXCUT[426], FTX[427], GAS5[428], H19[268], HIF2PUT[434], HOTAIR[435], HOTTIP[63], HULC[289][290], ICR[442], LINC00570[403], LINC-ROR[300][443], lncRNA-ATB[444], LUNAR1[445], MALAT1[435], MEG3[452], MIAT[321], MT-ND5[456], MT-ND6[456], ncRNA-a6[403], NEAT1[457], OIP5-AS1[173], PCAT6[403], PCGEM1[458], RN7SK[459], SKP2[460], SOX2-OT[461], SPRY4-IT1[286], TP53COR1[358], TRERNA1[403][462], TSIX[360], TUG1[463], UCA1[464], UFC1[465], WRAP53[466][467], XIST[468]