A New Series of Pyrrole-Based Chalcones: Synthesis and Evaluation of Antimicrobial Activity, Cytotoxicity, and Genotoxicity

In an effort to develop new potent antimicrobial and anticancer agents, new pyrrole-based chalcones were designed and synthesized via the base-catalyzed Claisen-Schmidt condensation of 2-acetyl-1-methylpyrrole with 5-(aryl)furfural derivatives. The compounds were evaluated for their in vitro antimicrobial effects on pathogenic bacteria and Candida species using microdilution and ATP luminescence microbial cell viability assays. MTT assay was performed to determine the cytotoxic effects of the compounds on A549 human lung adenocarcinoma, HepG2 human hepatocellular carcinoma, C6 rat glioma, and NIH/3T3 mouse embryonic fibroblast cell lines. 1-(1-Methyl-1H-pyrrol-2-yl)-3-(5-(4-chlorophenyl)furan-2-yl)prop-2-en-1-one (7) and 1-(1-methyl-1H-pyrrol-2-yl)-3-(5-(2,5-dichlorophenyl)furan-2-yl)prop-2-en-1-one (9) were found to be the most potent antifungal agents against Candida krusei and therefore these compounds were chosen for flow cytometry analysis and Ames MPF assay. ATP bioluminescence assay indicated that the antifungal activity of compounds 7 and 9 against C. krusei was significantly higher than that of other compounds and the reference drug (ketoconazole), whereas flow cytometry analysis revealed that the percentage of dead cells treated with compound 7 was more than that treated with compound 9 and ketoconazole. According to Ames MPF assay, compounds 7 and 9 were found to be non-genotoxic against TA98 and TA100 with/without metabolic activation. MTT assay indicated that 1-(1-methyl-1H-pyrrol-2-yl)-3-(5-(2-nitrophenyl)furan-2-yl)prop-2-en-1-one (3) showed more selective anticancer activity than cisplatin against the HepG2 cell line. On the other hand, 1-(1-methyl-1H-pyrrol-2-yl)-3-(5-(4-nitrophenyl)furan-2-yl)prop-2-en-1-one (1) was found to be more effective and selective on the A549 cell line than cisplatin.


Introduction
Infections caused by pathogenic bacteria represent a major public health burden, not just in terms of morbidity and mortality, but also in terms of increased healthcare costs [1]. The treatment of bacterial infections is increasingly complicated by the ability of bacteria to rapidly evolve resistance to antimicrobial agents [1,2]. Opportunistic fungal infections, particularly those caused by Candida spp., have emerged as major causes of morbidity and mortality in immunocompromised patients. Fungi are eukaryotic pathogens, therefore the close evolutionary relationship between fungi and their human hosts has limited the number of drug targets that can be exploited to selectively kill the pathogen with minimal host toxicity [3][4][5][6]. On the other hand, cancer has become the leading cause of death in developed countries [7]. Over the years, the design of chemotherapy has become considerably sophisticated, yet there is no cancer treatment that is 100% effective against disseminated cancer [8,9]. As a result, the discovery and development of potent and selective anti-infective and anticancer agents has been the subject of considerable research in medicinal chemistry.
Chalcones play a pivotal role in the flavonoid biosynthetic pathway and are ubiquitously present in natural products, including many dietary products like fruits, vegetables, spices, and tea. Therapeutic applications of chalcones trace back thousands of years through the use of plants and herbs for the treatment of various diseases, such as cancer, inflammation, and diabetes. In particular, naturally occurring chalcones and their synthetic analogues have attracted a great deal of interest as potent candidates for the treatment of cancer due to their high therapeutic index, negligible side effects, and ease of synthesis. Chalcones have been reported to exert cytotoxic activity against many cancer cells through multiple mechanisms including cell cycle disruption, angiogenesis inhibition, apoptosis induction, tubulin polymerization inhibition, blockade of the NF-κB signalling pathway, and inhibition of cell cycle regulatory kinases [10][11][12][13][14][15]. On the other hand, several studies have pointed out the antimicrobial potential of chalcones against a wide range of fungi and bacteria, including resistant ones, clearly indicating that they are attractive target compounds for the discovery and development of new anti-infective agents [16][17][18][19][20][21][22].
In the drug discovery process, three-pronged strategies, namely structural manipulation of both aryl rings, replacement of aryl rings with heteroaryl scaffolds, and molecular hybridization through conjugation with biologically active scaffolds, are employed to enhance the biological activity of chalcones. The successful application of these three-pronged strategies for the discovery of new chalcone-based chemotherapeutic agents has resulted in chemically diverse chalcones with potential therapeutic applications in the treatment of cancer and infectious diseases [15,16].
In the current work, new chalcone derivatives were designed as potential antimicrobial and anticancer agents through the replacement of aryl rings (A and B) with biologically active heterocyclic scaffolds, namely pyrrole and furan rings, to enhance biological activity ( Figure 1). For this purpose, new chalcone derivatives were synthesized and screened for their in vitro antimicrobial effects on pathogenic bacteria and Candida species, and their genotoxic and cytotoxic effects on A549 human lung adenocarcinoma, HepG2 human hepatocellular carcinoma, C6 rat glioma, and NIH/3T3 mouse embryonic fibroblast cell lines. are eukaryotic pathogens, therefore the close evolutionary relationship between fungi and their human hosts has limited the number of drug targets that can be exploited to selectively kill the pathogen with minimal host toxicity [3][4][5][6]. On the other hand, cancer has become the leading cause of death in developed countries [7]. Over the years, the design of chemotherapy has become considerably sophisticated, yet there is no cancer treatment that is 100% effective against disseminated cancer [8,9]. As a result, the discovery and development of potent and selective anti-infective and anticancer agents has been the subject of considerable research in medicinal chemistry. Chalcones play a pivotal role in the flavonoid biosynthetic pathway and are ubiquitously present in natural products, including many dietary products like fruits, vegetables, spices, and tea. Therapeutic applications of chalcones trace back thousands of years through the use of plants and herbs for the treatment of various diseases, such as cancer, inflammation, and diabetes. In particular, naturally occurring chalcones and their synthetic analogues have attracted a great deal of interest as potent candidates for the treatment of cancer due to their high therapeutic index, negligible side effects, and ease of synthesis. Chalcones have been reported to exert cytotoxic activity against many cancer cells through multiple mechanisms including cell cycle disruption, angiogenesis inhibition, apoptosis induction, tubulin polymerization inhibition, blockade of the NF-κB signalling pathway, and inhibition of cell cycle regulatory kinases [10][11][12][13][14][15]. On the other hand, several studies have pointed out the antimicrobial potential of chalcones against a wide range of fungi and bacteria, including resistant ones, clearly indicating that they are attractive target compounds for the discovery and development of new anti-infective agents [16][17][18][19][20][21][22].
In the drug discovery process, three-pronged strategies, namely structural manipulation of both aryl rings, replacement of aryl rings with heteroaryl scaffolds, and molecular hybridization through conjugation with biologically active scaffolds, are employed to enhance the biological activity of chalcones. The successful application of these three-pronged strategies for the discovery of new chalcone-based chemotherapeutic agents has resulted in chemically diverse chalcones with potential therapeutic applications in the treatment of cancer and infectious diseases [15,16].
In the current work, new chalcone derivatives were designed as potential antimicrobial and anticancer agents through the replacement of aryl rings (A and B) with biologically active heterocyclic scaffolds, namely pyrrole and furan rings, to enhance biological activity ( Figure 1). For this purpose, new chalcone derivatives were synthesized and screened for their in vitro antimicrobial effects on pathogenic bacteria and Candida species, and their genotoxic and cytotoxic effects on A549 human lung adenocarcinoma, HepG2 human hepatocellular carcinoma, C6 rat glioma, and NIH/3T3 mouse embryonic fibroblast cell lines.
In the IR spectra, the characteristic C=O stretching bands due to the carbonyl group were observed at about 1635.64-1649.14 cm −1 . In the 1 H-NMR spectra of the compounds, a sharp singlet was observed at 3.92-3.98 ppm, integrating for three protons that correspond to the 1H-pyrrole-CH3 protons. The doublets appeared in the region 7.07-7.16 ppm (J = 3.20-4.80 Hz), corresponding to the furan C4-H. The doublets or broad singlets appeared in the region 7.17-7.24 ppm (J = 3.20-4.80 Hz),
In the IR spectra, the characteristic C=O stretching bands due to the carbonyl group were observed at about 1635.64-1649.14 cm −1 . In the 1 H-NMR spectra of the compounds, a sharp singlet was observed at 3.92-3.98 ppm, integrating for three protons that correspond to the 1H-pyrrole-CH 3 protons. The doublets appeared in the region 7.07-7.16 ppm (J = 3.20-4.80 Hz), corresponding to the furan C 4 -H. The doublets or broad singlets appeared in the region 7.17-7.24 ppm (J = 3.20-4.80 Hz), corresponding to the furan C 3 -H. The olefinic protons (-CO-CH=CH-) resonated as doublets (J = 15.20-15.60 Hz) and multiplets at 7.32-7.67 ppm. All the other aromatic protons were observed as expected. In the 13 C-NMR spectra of the compounds, the signal of the characteristic carbonyl carbon appeared in the region 177.51-178.04 ppm. 1H-pyrrole-CH 3 signals were observed at 37.14-37.18 ppm.
In the mass spectra, the electrospray ionization (ESI) technique with positive ion mode was applied and M + 1 peaks were detected as base peaks. In the 13 C-NMR spectra of the compounds, the signal of the characteristic carbonyl carbon appeared in the region 177.51-178.04 ppm. 1H-pyrrole-CH3 signals were observed at 37.14-37.18 ppm.
In the mass spectra, the electrospray ionization (ESI) technique with positive ion mode was applied and M + 1 peaks were detected as base peaks.

Microbiology
Compounds 1-10 were screened for their in vitro antimicrobial effects on pathogenic bacteria and Candida species using microdilution susceptibility assay. Generally, the compounds were more effective on fungi than the bacteria used in this study (Table 1). According to the minimum inhibitory concentration (MIC) results, compounds 2 and 10 were the most effective antibacterial agents in this series on Enterococcus faecalis (ATCC 51299) with a MIC value of 100 μg/mL when compared with chloramphenicol (MIC = 100 μg/mL). On the other hand, compounds 3 and 7 were the most potent antifungal agents in this series against Candida albicans with a MIC value of 50 μg/mL when compared with ketoconazole (MIC = 50 μg/mL). Compounds 2, 3, 4, 7, 8, and 9 were found as the most active compounds against Candida glabrata with a MIC value of 100 μg/mL. Compounds 3, 4, and 9 also showed notable anticandidal activity against Candida parapsilosis with a MIC value of 50 μg/mL. Compound 8 and ketoconazole displayed antifungal activity against Candida krusei with a MIC value of 50 μg/mL. In addition, compounds 7 and 9 were more effective than ketoconazole on C. krusei. 4-Chloro substituted compound 7 and 2,5-dichloro substituted compound 9 showed anticandidal activity against C. krusei with a MIC value of 25 μg/mL. This outcome pointed out the importance of the position of chloro substituent for anticandidal activity. The antimicrobial efficiency of these compounds was further investigated using ATP bioluminescence assay as a more sensitive method [23].
According to microdilution susceptibility and ATP bioluminescence assays, none of the compounds were effective on Staphylococcus aureus and Escherichia coli. Both methods demonstrated the same results for E. faecalis (ATCC 51299) and compounds 2 and 10 showed antimicrobial activity close to chloramphenicol. Although the MIC results did not indicate any significant activity for E. faecalis (ATCC 29212), surprisingly, ATP bioluminescence assay showed that E. faecalis (ATCC 29212) was sensitive to compounds 1, 2, 3, and 7 but not as much as chloramphenicol. Vancomycin resistance and high-level aminoglycoside resistance of E. faecalis (ATCC 51299), and susceptibility of E. faecalis (ATCC 29212) to vancomycin, gentamicin, and streptomycin are well known [24]. The discovery

Microbiology
Compounds 1-10 were screened for their in vitro antimicrobial effects on pathogenic bacteria and Candida species using microdilution susceptibility assay. Generally, the compounds were more effective on fungi than the bacteria used in this study (Table 1). According to the minimum inhibitory concentration (MIC) results, compounds 2 and 10 were the most effective antibacterial agents in this series on Enterococcus faecalis (ATCC 51299) with a MIC value of 100 µg/mL when compared with chloramphenicol (MIC = 100 µg/mL). On the other hand, compounds 3 and 7 were the most potent antifungal agents in this series against Candida albicans with a MIC value of 50 µg/mL when compared with ketoconazole (MIC = 50 µg/mL). Compounds 2, 3, 4, 7, 8, and 9 were found as the most active compounds against Candida glabrata with a MIC value of 100 µg/mL. Compounds 3, 4, and 9 also showed notable anticandidal activity against Candida parapsilosis with a MIC value of 50 µg/mL. Compound 8 and ketoconazole displayed antifungal activity against Candida krusei with a MIC value of 50 µg/mL. In addition, compounds 7 and 9 were more effective than ketoconazole on C. krusei. 4-Chloro substituted compound 7 and 2,5-dichloro substituted compound 9 showed anticandidal activity against C. krusei with a MIC value of 25 µg/mL. This outcome pointed out the importance of the position of chloro substituent for anticandidal activity. The antimicrobial efficiency of these compounds was further investigated using ATP bioluminescence assay as a more sensitive method [23].
According to microdilution susceptibility and ATP bioluminescence assays, none of the compounds were effective on Staphylococcus aureus and Escherichia coli. Both methods demonstrated the same results for E. faecalis (ATCC 51299) and compounds 2 and 10 showed antimicrobial activity close to chloramphenicol. Although the MIC results did not indicate any significant activity for E. faecalis (ATCC 29212), surprisingly, ATP bioluminescence assay showed that E. faecalis (ATCC 29212) was sensitive to compounds 1, 2, 3, and 7 but not as much as chloramphenicol. Vancomycin resistance and high-level aminoglycoside resistance of E. faecalis (ATCC 51299), and susceptibility of E. faecalis (ATCC 29212) to vancomycin, gentamicin, and streptomycin are well known [24]. The discovery of new antimicrobial agents against Enterococci is highly important due to increasing mortality risk. For both Enterococci strains, in particular the chemical structure of compound 2 can be re-evaulated to design new, more effective antimicrobial agents. On the other hand, the compounds did not show any meaningful growth inhibitory effects on K. pneumoniae according to microdilution assay, whereas all compounds except compounds 5, 6, and 9 have antimicrobial activities close to chloramphenicol when considering the ATP luminescence assays.  According to ATP bioluminescence assay results, compounds 7 and 9 have more statistically significant antifungal activity against C. krusei than ketoconazole ( Figure 3). Compounds 4, 7, and 8 showed antifungal activity close to ketoconazole on C. glabrata regarding both methods. Unlike the microdilution assay, ATP bioluminescence assay indicated that none of the compounds showed antifungal activity against C. parapsilosis. In microdilution assay, compounds 3 and 7 showed more antifungal activity against C. albicans than other compounds, whereas these compounds showed no statistically significant effects in ATP bioluminescence assay. The reason for the false negative ATP bioluminescence assay results could be explained by the fact that several classes of inhibitory compounds interfere with luciferase enzyme activity. Inhibition of luciferase enzyme gives low relative light unit (RLU) values [25].
In order to evaluate the flow cytometry results, we focused on C. krusei since the MIC results of compounds 7 and 9 on C. krusei were statistically significant in this series. For this reason, C. krusei cells were treated with 25 µg/mL of compounds 7 and 9 which was found as the lowest effective concentration according to the microdilution assay. The percentage of inhibited cells was determined using flow cytometry. The results indicated that the activity of the compounds is very close to ketoconazole and there were only~2% differences ( Table 2). Contrary to the aforementioned assays, flow cytometry analysis of compound 9 showed less inhibitory activity than ketoconazole ( Figure 4).

Cytotoxicity
Compounds 1-10 were evaluated for their anticancer activities against A549 human lung adenocarcinoma, HepG2 human hepatocellular carcinoma, and C6 rat glioma cell lines (Table 3).
Compounds 3 (IC50 = 27 μg/mL), 5 (IC50 = 31 μg/mL), and 7 (IC50 = 23 μg/mL) showed notable anticancer activity against the HepG2 cell line when compared with cisplatin (IC50 = 38 μg/mL). On the other hand, all compounds were found to be less potent than cisplatin against the C6 cell line. However, compounds 1 (IC50 = 84 μg/mL) and 8 (IC50 = 90 μg/mL) were the most effective agents in this series against the C6 cell line. When the compounds were compared in terms of their anticancer activity against the A549 cell line, compound 1 was identified as the most promising anticancer agent in this series with an IC50 value of 0.3 μg/mL, indicating that compound 1 was more effective than cisplatin (IC50 = 19 μg/mL). It is noteworthy to indicate that the p-nitro substituent significantly enhanced anticancer activity against the A549 cell line.
The cytotoxicity of anticancer agents against healthy cells limits their efficacy. An ideal anticancer drug should exert selectivity to cancer cells without causing any harm to healthy cells [26,27]. For this purpose, the selectivity of the compounds was tested against NIH/3T3 cell lines (Table 3). Compounds 7 and 9, potent anticandidal agents against C. krusei in this series, showed IC50 values against NIH/3T3 cell line higher than their MIC values. These results pointed out the importance of these compounds as promising anticandidal agents against C. krusei.
Selectivity Index (SI), which is an important marker in comparing the safety and therapeutic value of the compounds, plays a key role in the drug development process [26,27]. Compounds with SI values higher than cisplatin can be considered as anticancer drug candidates. Compound 3, having a SI value higher than cisplatin, was found to be the most potent anticancer agent against the HepG2 cell line in this series, therefore compound 3 can be considered as a promising candidate for further studies (Table 4). On the other hand, the SI value of compound 1 was significantly higher than that of cisplatin against the A549 cell line, indicating its significance as a promising anticancer candidate for the treatment of lung cancer, and should undergo further studies.

Cytotoxicity
Compounds 1-10 were evaluated for their anticancer activities against A549 human lung adenocarcinoma, HepG2 human hepatocellular carcinoma, and C6 rat glioma cell lines (Table 3).
Compounds 3 (IC 50 = 27 µg/mL), 5 (IC 50 = 31 µg/mL), and 7 (IC 50 = 23 µg/mL) showed notable anticancer activity against the HepG2 cell line when compared with cisplatin (IC 50 = 38 µg/mL). On the other hand, all compounds were found to be less potent than cisplatin against the C6 cell line. However, compounds 1 (IC 50 = 84 µg/mL) and 8 (IC 50 = 90 µg/mL) were the most effective agents in this series against the C6 cell line. When the compounds were compared in terms of their anticancer activity against the A549 cell line, compound 1 was identified as the most promising anticancer agent in this series with an IC 50 value of 0.3 µg/mL, indicating that compound 1 was more effective than cisplatin (IC 50 = 19 µg/mL). It is noteworthy to indicate that the p-nitro substituent significantly enhanced anticancer activity against the A549 cell line.
The cytotoxicity of anticancer agents against healthy cells limits their efficacy. An ideal anticancer drug should exert selectivity to cancer cells without causing any harm to healthy cells [26,27]. For this purpose, the selectivity of the compounds was tested against NIH/3T3 cell lines (Table 3). Compounds 7 and 9, potent anticandidal agents against C. krusei in this series, showed IC 50 values against NIH/3T3 cell line higher than their MIC values. These results pointed out the importance of these compounds as promising anticandidal agents against C. krusei.
Selectivity Index (SI), which is an important marker in comparing the safety and therapeutic value of the compounds, plays a key role in the drug development process [26,27]. Compounds with SI values higher than cisplatin can be considered as anticancer drug candidates. Compound 3, having a SI value higher than cisplatin, was found to be the most potent anticancer agent against the HepG2 cell line in this series, therefore compound 3 can be considered as a promising candidate for further studies (Table 4). On the other hand, the SI value of compound 1 was significantly higher than that of cisplatin against the A549 cell line, indicating its significance as a promising anticancer candidate for the treatment of lung cancer, and should undergo further studies.

Genotoxicity
In Ames microplate format (MPF) assay, compound 7 was calculated to have a baseline of 3.95 and 3.04, and did not show 1.5-2.5-fold increases over the baseline and any statistical significance in the tested doses against TA98 with/without S9 enzyme, respectively. Furthermore, the same compound showed a baseline of 3.00 and 5.91, and did not show 1.5-2.5-fold increases over the baseline and any statistical significance in the tested doses against TA100 with/without S9 enzyme, respectively ( Figure 5, Table 5).

Genotoxicity
In Ames microplate format (MPF) assay, compound 7 was calculated to have a baseline of 3.95 and 3.04, and did not show 1.5-2.5-fold increases over the baseline and any statistical significance in the tested doses against TA98 with/without S9 enzyme, respectively. Furthermore, the same compound showed a baseline of 3.00 and 5.91, and did not show 1.5-2.5-fold increases over the baseline and any statistical significance in the tested doses against TA100 with/without S9 enzyme, respectively ( Figure 5, Table 5).  Compound 9 showed a baseline of 5.92 against TA98 with S9 enzyme activation and 5.60 without S9 enzyme activation. In this case, 1.5-2.5-fold increases over the baseline and significant increases in a dose-dependent manner were not exhibited. According to the results, compound 9 was accepted as non-genotoxic in the tested doses. Compound 9 did not have 1.5-2.5-fold increases, as indicated in the criteria; the significant increases obtained with 2.5 mg/mL and 5 mg/mL concentrations were below the mentioned fold increases and not dose-dependent ( Figure 6, Table 5).
In conclusion, compounds 7 and 9 were found to be non-genotoxic against TA98 and TA100 with/without metabolic activation according to the Ames results, indicating that these compounds were potential candidates for further studies.
-------2-fold induction over baseline.  Compound 9 showed a baseline of 5.92 against TA98 with S9 enzyme activation and 5.60 without S9 enzyme activation. In this case, 1.5-2.5-fold increases over the baseline and significant increases in a dose-dependent manner were not exhibited. According to the results, compound 9 was accepted as non-genotoxic in the tested doses. Compound 9 did not have 1.5-2.5-fold increases, as indicated in the criteria; the significant increases obtained with 2.5 mg/mL and 5 mg/mL concentrations were below the mentioned fold increases and not dose-dependent ( Figure 6, Table 5).
In conclusion, compounds 7 and 9 were found to be non-genotoxic against TA98 and TA100 with/without metabolic activation according to the Ames results, indicating that these compounds were potential candidates for further studies. Compound 9 showed a baseline of 5.92 against TA98 with S9 enzyme activation and 5.60 without S9 enzyme activation. In this case, 1.5-2.5-fold increases over the baseline and significant increases in a dose-dependent manner were not exhibited. According to the results, compound 9 was accepted as non-genotoxic in the tested doses. Compound 9 did not have 1.5-2.5-fold increases, as indicated in the criteria; the significant increases obtained with 2.5 mg/mL and 5 mg/mL concentrations were below the mentioned fold increases and not dose-dependent ( Figure 6, Table 5).
In conclusion, compounds 7 and 9 were found to be non-genotoxic against TA98 and TA100 with/without metabolic activation according to the Ames results, indicating that these compounds were potential candidates for further studies.

Chemistry
All reagents were purchased from commercial suppliers and were used without further purification. The melting points (m.p.) of the compounds were determined on an Electrothermal 9100 melting point apparatus (Weiss-Gallenkamp, Loughborough, UK) and are uncorrected. IR spectra were recorded on an IRPrestige-21 Fourier Transform Infrared spectrophotometer (Shimadzu, Tokyo, Japan). 1 H-NMR and 13 C-NMR spectra were recorded on a Bruker spectrometer (Bruker, Billerica, MA, USA). Chemical shifts were reported in parts per million (ppm) and the coupling constants (J) were expressed in Hertz (Hz). Mass spectra were recorded on a Shimadzu LCMS-IT-TOF system (Shimadzu, Kyoto, Japan). Thin Layer Chromatography (TLC) was performed on TLC Silica gel 60 F254 aluminium sheets (Merck, Darmstadt, Germany) to check the purity of the compounds.

Strains and Growth Conditions
Compounds 1-10 were screened for their antimicrobial activity against gram-negative bacteria, gram-positive bacteria, and yeasts, listed in Table 1. Bacteria were grown in Mueller-Hinton Broth and yeasts were grown in Sabouraud Dextrose Broth (SDB) during experiments. Overnight cultures were prepared routinely by subculturing of stock culture onto Mueller-Hinton Agar for bacteria and Sabouraud Dextrose Agar for yeasts [28].

Microdilution Assay to Determine MICs
Microdilution susceptibility assay was used for the determination of antibacterial and anticandidal efficacy of compounds 1-10. Chloramphenicol and ketoconazole were used as positive controls for bacteria and yeasts, respectively. All experiments were designed according to the Clinical Laboratory Standards Institute (CLSI) [29,30]. All chemicals were dissolved in dimethyl sulfoxide (DMSO) to obtain stock solution (10 mg/mL). Two-fold serial dilutions (800, 400, 200...0.78 µg/mL) of the compounds were prepared from stock solutions with dH 2 O. 100 µL of each solution was transferred to 96-well microtiter plates and 100 µL of 10 6 CFU/mL of bacteria and 2 × 10 3 of CFU/mL yeast were added to related wells. As negative controls, wells including microorganisms without agents and wells including agents without microorganisms were used. The plates were kept at 35 • C for 18-20 h and the growth was determined with resazurin (20 mg/mL). Assays were carried out in triplicate [28].

ATP Luminescence Assay
A model from BioTek Instruments Inc. combined with a BacTiter-Glo TM Microbial Cell Viability assay (Promega Corp., Madison, WI, USA) was used to provide a sensitive and rapid method for determining the number of viable microbial cells in culture based on quantitation of the ATP present. Cultures were treated with reference drugs at MIC values for 24 h. After incubation, cultures were added into the wells (final concentration of bacteria was 5 × 10 5 CFU/mL and 2.5 × 10 6 CFU/mL for yeasts). After adding the BacTiter reagent, incubation time for bacteria and yeasts was 5 min and 15 min, respectively.
The assay generates a "glow-type" luminescent signal, produced by the luciferase reaction. Briefly, after chemicals and strains were incubated for 24 h, 100 µL of the culture was taken from each well and mixed with the same volume of the BacTiter-Glo™ reagent in a white, opaque-walled microtiter plate. Control wells containing medium without cells were prepared to obtain a value for background luminescence. Cells without compound were used as an ATP-positive control. The microplates were further incubated under agitation for 7 min. Bioluminescence was recorded in a multi-detection microplate reader (BioTek Synergy 2 Multi-Mode Microplate Reader, BioTek Instruments, Winooski, VT, USA). In Figure 3, results were given as percentage of untreated control, which is set at 100%. Experiments were performed in triplicate and each sample was measured in four replicates [31].

Flow Cytometry
In order to investigate the effects of compounds 7 and 9 on the integrity of C. krusei cells, flow cytometry was used with BD cell viability kits. Live cells are impermeable to dyes such as PI since they have intact membranes. TO is a permeant dye and enters live and dead cells to varying degrees. The fluorescent signal from TO in viable cells allows their enumeration, even when debris in the cell preparation contaminates a scatter gate around the cells. Thus, the combination of these two dyes provides a rapid and reliable method for discriminating live and dead eukaryotic cells, including yeasts. All steps were performed according to manufacturers' recommendations. Briefly, Candida cells were cultured at 35 • C in SDB until late log phase. The cells were centrifuged and washed with phosphate-buffered saline (PBS) at pH = 7.0. Suspensions containing 2 × 10 3 cells/mL were incubated with compounds 7 and 9, and ketoconazole as a reference drug, for 4 h at 35 • C, with shaking (200 r.p.m.). Concentrations of each drug (around the corresponding MIC breakpoints) were 25 µg/mL. Suspensions of treated and untreated cells were incubated for 30 min in the presence of 2 µL of PI and 2 µL of TO, in the dark, at room temperature. The cell suspensions were analysed in a BD Accuri C6 flow cytometer (Becton-Dickinson, Mansfield, MA, USA). The cell scattergram (forward scatter: FS, side scatter: SS), the autofluorescence (without fluorocrome), and the intensity of fluorescence at FL1 (green fluorescence, 525 nm) and FL2 (red fluorescence, 620 nm) were recorded using a logarithmic scale [32,33].

Statistical Analysis of the Quantitative Data
For each quantitative assay, the values obtained with the nine strains were tested using analysis of variance (ANOVA). A p-value below 0.05 indicates that at least one of the strains has a mean that differs from the others. For those assays that yielded a p-value below 0.05, the Tukey and Scheffe test was performed as a post-hoc test. The significance level alpha was set at 0.05. The software IBM SPSS Statistics ® version 21 (Armonk, NY, USA) was used for statistical analysis. All values were represented as mean ± standard deviation (SD).

Cytotoxicity
The anticancer effects of compounds 1-10 on A549 human lung adenocarcinoma (ATCC ® CCL-185™), HepG2 human hepatocellular carcinoma (ATCC ® HB-8065™), and C6 rat glioma (ATCC ® CCL107™) cell lines were assessed using 3-(4,5-Dimethylthiazol-2-yl)-2,5-diphenyltetrazolium bromide (MTT) assay, whereas the selectivity of compounds 1-10 was tested using NIH/3T3 mouse embryonic fibroblast cell line (ATCC ® CRL-1658™, London, UK). All cell lines were incubated according to the supplier's recommendations. The cells were seeded as 1 × 10 4 cells into each well of the 96-well plates. MTT assay was performed as previously described [34,35]. The compounds were tested between the concentrations equal to 1 mM and 0.000316 mM (1.0, 0.316, 0.10, 0.0316, 0.01, 0.00316, 0.001, 0.000316 mM). Stock solutions of compounds were prepared in dimethyl sulfoxide (DMSO) and further dilutions were made with fresh culture medium. The final DMSO concentration was under 1% [34] and cisplatin was used as a positive control. Inhibition % was calculated for each concentration according to the formula below, and IC 50 values were determined by plotting a dose-response curve of inhibition % versus compound concentrations tested. All experiments were performed in quadruplicate.
Inhibition % = 100 − [(OD test compound − OD blank /OD solvent control − OD blank )] × 100 SI values were also calculated according to the formula [24,25] below: SI = IC 50 value for NIH/3T3 cell line/IC 50 value for A549, HepG2, or C6 cell lines IC 50 values higher than any value (>value) were accepted as the value itself to calculate SI.

Genotoxicity
An Ames MPF 98/100 mutagenicity assay sample kit (Xenometrix AG, Allschwil, Switzerland) was used to evaluate the genotoxicity of compounds 7 and 9 as described previously [34,35]. Salmonella typhimurium TA98 (frameshift mutations) and TA100 (base-pair substitutions) strains were used and the compounds were tested in concentrations between 16 and 5000 µg/mL (5.0, 2.5, 1.25, 0.625, 0.3125, 0.156 mg/mL in DMSO) in accordance with the guidelines [36]. Mutagenity was tested with/without metabolic activation with an Aroclor™-1254 induced male Sprague-Dawley rat liver microsomal enzyme (S9) mix (Xenometrix AG, Allschwil, Switzerland). 2-Nitrofluorene (2.0 µg/mL) and 4-nitroquinoline N-oxide (0.1 µg/mL) were used without S9, and 1.0 µg/mL and 2.5 µg/mL of 2-aminoanthracene solutions were used with S9 against TA98 and TA100 as positive controls, respectively. At the end of each experiment, yellow wells were counted as positive and compared with the negative control. Fold induction over the negative control and fold induction over the baseline were calculated as described: Fold induction over the negative control is the ratio of the mean number of positive wells for the dose concentration divided by the mean number of positive wells for the zero-dose (negative) control. Fold induction over the baseline is the ratio of the mean number of positive wells for the dose concentration divided by the zero-dose baseline. The zero-dose baseline is obtained by adding one standard deviation to the mean number of positive wells of the zero-dose control. If the baseline is less than one, the value is set to one for calculation.
Genotoxicity was determined according to the previous criteria [37]. For a baseline value of ≤3, significant increases between 2-and 3-fold of the baseline were classified as weak mutagens, and increases ≥3-fold of the baseline were classified as mutagens. For a baseline value of >3, significant increases between 1.5-and 2.5-fold of the baseline were classified as weak mutagens, and increases ≥2.5-fold of the baseline were classified as mutagens. At least two adjacent doses with significant increases, or a significant increase at the highest dose level, should be observed for a mutagenic compound. All of the doses were compared according to Student's t-test at p < 0.05 for statistical significance. Compounds which did not show any of the characteristics mentioned above were classified as non-mutagenic.

Conclusions
In this study, new pyrrole-based chalcone derivatives were synthesized and investigated for their antimicrobial effects on gram-negative bacteria, gram-positive bacteria, and Candida species, and their cytotoxic effects against A549 human lung adenocarcinoma, HepG2 human hepatocellular carcinoma, C6 rat glioma, and NIH/3T3 mouse embryonic fibroblast cell lines.
ATP luminescence assay indicated that compounds 7 and 9 showed significant antifungal activity against C. krusei in this series, therefore compounds 7 and 9 were chosen for flow cytometry analysis and Ames MPF assay. Flow cytometry analysis revealed that the percentage of dead cells treated with compound 7 was more than that treated with compound 9 and ketoconazole. According to Ames MPF assay, compounds 7 and 9 did not show any genotoxic activity. On the other hand, compounds 1 and 3 were found to be the most promising anticancer agents in this series against A549 and HepG2 cell lines, respectively. According to MTT assay, compounds 1 and 3 stand out as potential candidates for further studies.