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Open AccessArticle Extraction of Pathogenesis-Related Proteins and Phenolics in Sauvignon Blanc as Affected by Grape Harvesting and Processing Conditions
Molecules 2017, 22(7), 1164; doi:10.3390/molecules22071164
Received: 27 June 2017 / Revised: 10 July 2017 / Accepted: 10 July 2017 / Published: 12 July 2017
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Abstract
Thaumatin-like proteins (TLPs) and chitinases are the two main groups of pathogenesis-related (PR) proteins found in wine that cause protein haze formation. Previous studies have found that phenolics are also involved in protein haze formation. In this study, Sauvignon Blanc grapes were harvested
[...] Read more.
Thaumatin-like proteins (TLPs) and chitinases are the two main groups of pathogenesis-related (PR) proteins found in wine that cause protein haze formation. Previous studies have found that phenolics are also involved in protein haze formation. In this study, Sauvignon Blanc grapes were harvested and processed in two vintages (2011 and 2012) by three different treatments: (1) hand harvesting with whole bunch press (H-WB); (2) hand harvesting with destem/crush and 3 h skin contact (H-DC-3); and (3) machine harvesting with destem/crush and 3 h skin contact (M-DC-3). The juices were collected at three pressure levels (0.4 MPa, 0.8 MPa and 1.6 MPa), some juices were fermented in 750 mL of wine bottles to determine the bentonite requirement for the resulting wines. Results showed juices of M-DC-3 had significantly lower concentration of proteins, including PR proteins, compared to those of H-DC-3, likely due to the greater juice yield of M-DC-3 and interactions between proteins and phenolics. Juices from the 0.8–1.6 MPa pressure and resultant wines had the highest concentration of phenolics but the lowest concentration of TLPs. This supported the view that TLPs are released at low pressure as they are mainly present in grape pulp but additional extraction of phenolics largely present in skin occurs at higher pressing pressure. Wine protein stability tests showed a positive linear correlation between bentonite requirement and the concentration of chitinases, indicating the possibility of predicting bentonite requirement by quantification of chitinases. This study contributes to an improved understanding of extraction of haze-forming PR proteins and phenolics that can influence bentonite requirement for protein stabilization. Full article
(This article belongs to the collection Wine Chemistry)
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Open AccessFeature PaperArticle A Probabilistic Short-Term Water Demand Forecasting Model Based on the Markov Chain
Water 2017, 9(7), 507; doi:10.3390/w9070507
Received: 15 May 2017 / Revised: 6 July 2017 / Accepted: 7 July 2017 / Published: 12 July 2017
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Abstract
This paper proposes a short-term water demand forecasting method based on the use of the Markov chain. This method provides estimates of future demands by calculating probabilities that the future demand value will fall within pre-assigned intervals covering the expected total variability. More
[...] Read more.
This paper proposes a short-term water demand forecasting method based on the use of the Markov chain. This method provides estimates of future demands by calculating probabilities that the future demand value will fall within pre-assigned intervals covering the expected total variability. More specifically, two models based on homogeneous and non-homogeneous Markov chains were developed and presented. These models, together with two benchmark models (based on artificial neural network and naïve methods), were applied to three real-life case studies for the purpose of forecasting the respective water demands from 1 to 24 h ahead. The results obtained show that the model based on a homogeneous Markov chain provides more accurate short-term forecasts than the one based on a non-homogeneous Markov chain, which is in line with the artificial neural network model. Both Markov chain models enable probabilistic information regarding the stochastic demand forecast to be easily obtained. Full article
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Open AccessArticle In Vitro Response of Human Peripheral Blood Mononuclear Cells (PBMC) to Collagen Films Treated with Cold Plasma
Polymers 2017, 9(7), 254; doi:10.3390/polym9070254
Received: 30 May 2017 / Revised: 25 June 2017 / Accepted: 26 June 2017 / Published: 29 June 2017
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Abstract
The implantation of biomedical devices, including collagen-based implants, evokes an inflammatory response. Despite inflammation playing an important role in the early stages of wound healing, excessive and non-resolving inflammation may lead to the poor performance of biomaterial implants in some patients. Therefore, steps
[...] Read more.
The implantation of biomedical devices, including collagen-based implants, evokes an inflammatory response. Despite inflammation playing an important role in the early stages of wound healing, excessive and non-resolving inflammation may lead to the poor performance of biomaterial implants in some patients. Therefore, steps should be taken to control the level and duration of an inflammatory response. In this study, oxygen and nitrogen gas plasmas were employed to modify the surface of collagen film, with a view to modifying the surface properties of a substrate in order to induce changes to the inflammatory response, whilst maintaining the mechanical integrity of the underlying collagen film. The effects of cold plasma treatment and resultant changes to surface properties on the non-specific inflammatory response of the immune system was investigated in vitro in direct contact cell culture by the measurement of protein expression and cytokine production after one and four days of human peripheral blood mononuclear cell (PBMC) culture. The results indicated that compared to oxygen plasma, nitrogen plasma treatment produced an anti-inflammatory effect on the collagen film by reducing the initial activation of monocytes and macrophages, which led to a lower production of pro-inflammatory cytokines IL-1β and TNFα, and higher production of anti-inflammatory cytokine IL-10. This was attributed to the combination of the amino chemical group and the significant reduction in roughness associated with the introduction of the nitrogen plasma treatment, which had an effect on the levels of activation of the adherent cell population. Full article
(This article belongs to the Special Issue Advance of Polymers Applied to Biomedical Applications: Biointerface)
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Open AccessArticle Exploring Diet Quality between Urban and Rural Dwelling Women of Reproductive Age
Nutrients 2017, 9(6), 586; doi:10.3390/nu9060586
Received: 9 May 2017 / Revised: 31 May 2017 / Accepted: 5 June 2017 / Published: 8 June 2017
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Abstract
Health disparities, including weight gain and obesity exist between urban and rural dwelling women. The primary aim was to compare diet quality in urban and rural women of reproductive age, and secondary analyses of the difference in macronutrient and micronutrient intake in urban
[...] Read more.
Health disparities, including weight gain and obesity exist between urban and rural dwelling women. The primary aim was to compare diet quality in urban and rural women of reproductive age, and secondary analyses of the difference in macronutrient and micronutrient intake in urban and rural women, and the predictors of diet quality. Diet quality was assessed in urban (n = 149) and rural (n = 394) women by a modified version of the Dietary Guideline Index (DGI) energy, macronutrient and micronutrient intake from a food frequency questionnaire (FFQ) and predictors of diet quality. Diet quality did not significantly differ between urban and rural women (mean ± standard deviation (SD), 84.8 ± 15.9 vs. 83.9 ± 16.5, p = 0.264). Rural women reported a significantly higher intake of protein, fat, saturated fat, monounsaturated fat, cholesterol and iron and a higher score in the meat and meat alternatives component of the diet quality tool in comparison to urban women. In all women, a higher diet quality was associated with higher annual household income (>$Australian dollar (AUD) 80,000 vs. <$AUD80,000 p = 0.013) and working status (working fulltime/part-time vs. unemployed p = 0.043). Total diet quality did not differ in urban and rural women; however, a higher macronutrient consumption pattern was potentially related to a higher lean meat intake in rural women. Women who are unemployed and on a lower income are an important target group for future dietary interventions aiming to improve diet quality. Full article
(This article belongs to the Special Issue Dietary Patterns, Diet Quality and Human Health)
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Open AccessArticle Insights into Ferric Leaching of Low Grade Metal Sulfide-Containing ores in an Unsaturated Ore Bed Using X-ray Computed Tomography
Minerals 2017, 7(5), 85; doi:10.3390/min7050085
Received: 22 February 2017 / Revised: 11 May 2017 / Accepted: 16 May 2017 / Published: 22 May 2017
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Abstract
The distribution of the metal-bearing mineral grains within a particulate ore prepared for leaching, and the impact of this spatial heterogeneity on overall extraction efficiency is of key importance to a mining industry that must continuously target ever-reducing grades and more complex ore
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The distribution of the metal-bearing mineral grains within a particulate ore prepared for leaching, and the impact of this spatial heterogeneity on overall extraction efficiency is of key importance to a mining industry that must continuously target ever-reducing grades and more complex ore bodies. If accessibility and recovery of the target minerals is to be improved, a more detailed understanding of the behaviour of the system must be developed. We present an in situ analysis using X-ray computed tomography to quantify the rates of volume reduction of sulfide mineral grains in low grade agglomerated copper bearing ores during a miniature laboratory scale column leaching experiment. The data shows the scale of the heterogeneity in the leaching behaviour, with an overall reduction of sulphide mineral grains of 50%, but that this value masks significant mm3 to cm3 scale variability in reduction. On the scale of individual ore fragments, leaching efficiency ranged from 22% to 99%. We use novel quantitative methods to determine the volume fraction of the sulfide that is accessible to the leachate solution. Full article
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Open AccessArticle High-Mobility Group Box 1 Disrupts Metabolic Function with Cigarette Smoke Exposure in a Ceramide-Dependent Manner
Int. J. Mol. Sci. 2017, 18(5), 1099; doi:10.3390/ijms18051099
Received: 17 April 2017 / Revised: 16 May 2017 / Accepted: 18 May 2017 / Published: 20 May 2017
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Abstract
We have previously found that cigarette smoke disrupts metabolic function, in part, by increasing muscle ceramide accrual. To further our understanding of this, we sought to determine the role of the cytokine high-mobility group box 1 (HMGB1), which is increased with smoke exposure,
[...] Read more.
We have previously found that cigarette smoke disrupts metabolic function, in part, by increasing muscle ceramide accrual. To further our understanding of this, we sought to determine the role of the cytokine high-mobility group box 1 (HMGB1), which is increased with smoke exposure, in smoke-induced muscle metabolic perturbations. To test this theory, we determined HMGB1 from lungs of human smokers, as well as from lung cells from mice exposed to cigarette smoke. We also treated cells and mice directly with HMGB1, in the presence or absence of myriocin, an inhibitor of serine palmitoyltransferase, the rate-limiting enzyme in ceramide biosynthesis. Outcomes included assessments of insulin resistance and muscle mitochondrial function. HMGB1 was significantly increased in both human lungs and rodent alveolar macrophages. Further testing revealed that HMGB1 treatment elicited a widespread increase in ceramide species and reduction in myotube mitochondrial respiration, an increase in reactive oxygen species, and reduced insulin-stimulated Akt phosphorylation. Inhibition of ceramide biosynthesis with myriocin was protective. In mice, by comparing treatments of HMGB1 injections with or without myriocin, we found that HMGB1 injections resulted in increased muscle ceramides, especially C16 and C24, which were necessary for reduced muscle mitochondrial respiration and compromised insulin and glucose tolerance. In conclusion, HMGB1 may be a necessary intermediate in the ceramide-dependent metabolic consequences of cigarette smoke exposure. Full article
(This article belongs to the Special Issue Inhaled Pollutants Modulate Respiratory and Systemic Diseases)
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Open AccessReview Specific Abilities in the Workplace: More Important Than g?
J. Intell. 2017, 5(2), 13; doi:10.3390/jintelligence5020013
Received: 30 November 2016 / Revised: 30 March 2017 / Accepted: 4 April 2017 / Published: 12 April 2017
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Abstract
A frequently reported finding is that general mental ability (GMA) is the best single psychological predictor of job performance. Furthermore, specific abilities often add little incremental validity beyond GMA, suggesting that they are not useful for predicting job performance criteria once general intelligence
[...] Read more.
A frequently reported finding is that general mental ability (GMA) is the best single psychological predictor of job performance. Furthermore, specific abilities often add little incremental validity beyond GMA, suggesting that they are not useful for predicting job performance criteria once general intelligence is accounted for. We review these findings and their historical background, along with different approaches to studying the relative influence of g and narrower abilities. Then, we discuss several recent studies that used relative importance analysis to study this relative influence and that found that specific abilities are equally good, and sometimes better, predictors of work performance than GMA. We conclude by discussing the implications of these findings and sketching future areas for research. Full article
(This article belongs to the Special Issue Intelligence in the Workplace)
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Open AccessArticle The ‘Molecule of the Month’ Website—An Extraordinary Chemistry Educational Resource Online for over 20 Years
Molecules 2017, 22(4), 549; doi:10.3390/molecules22040549
Received: 21 February 2017 / Revised: 27 March 2017 / Accepted: 27 March 2017 / Published: 29 March 2017
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Abstract
The Molecule of the Month website (http://www.chm.bris.ac.uk/motm/motm.htm) is an educational resource that is celebrating its 20th anniversary. Here we reflect on its pioneering role in promoting new technology for visualizing and presenting chemical information on the web, as well as its achievements, as
[...] Read more.
The Molecule of the Month website (http://www.chm.bris.ac.uk/motm/motm.htm) is an educational resource that is celebrating its 20th anniversary. Here we reflect on its pioneering role in promoting new technology for visualizing and presenting chemical information on the web, as well as its achievements, as a free educational resource, both as a teaching aid and as a multi-user, multi-author learning platform. We discuss the legal aspects of such sites, as well as issues around how to make the content permanent. Finally, we look forward to how such sites may evolve in the future. Full article
(This article belongs to the Section Molecular Diversity)
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Open AccessArticle Monitoring of Selected Health Indicators in Children Living in a Copper Mine Development Area in Northwestern Zambia
Int. J. Environ. Res. Public Health 2017, 14(3), 315; doi:10.3390/ijerph14030315
Received: 6 January 2017 / Revised: 10 March 2017 / Accepted: 14 March 2017 / Published: 19 March 2017
Cited by 1 | Viewed by 537 | PDF Full-text (1175 KB) | HTML Full-text | XML Full-text | Supplementary Files
Abstract
The epidemiology of malaria, anaemia and malnutrition in children is potentially altered in mining development areas. In a copper extraction project in northwestern Zambia, a health impact assessment (HIA) was commissioned to predict, manage and monitor health impacts. Two cross-sectional surveys were conducted:
[...] Read more.
The epidemiology of malaria, anaemia and malnutrition in children is potentially altered in mining development areas. In a copper extraction project in northwestern Zambia, a health impact assessment (HIA) was commissioned to predict, manage and monitor health impacts. Two cross-sectional surveys were conducted: at baseline prior to project development (2011) and at four years into development (2015). Prevalence of Plasmodium falciparum, anaemia and stunting were assessed in under-five-year-old children, while hookworm infection was assessed in children aged 9–14 years in communities impacted and comparison communities not impacted by the project. P. falciparum prevalence was significantly higher in 2015 compared to 2011 in both impacted and comparison communities (odds ratio (OR) = 2.51 and OR = 6.97, respectively). Stunting was significantly lower in 2015 in impacted communities only (OR = 0.63). Anaemia was slightly lower in 2015 compared to baseline in both impacted and comparison communities. Resettlement due to the project and migration background (i.e., moving into the area within the past five years) were generally associated with better health outcomes in 2015. We conclude that repeated cross-sectional surveys to monitor health in communities impacted by projects should become an integral part of HIA to deepen the understanding of changing patterns of health and support implementation of setting-specific public health measures. Full article
(This article belongs to the Special Issue Environmental Pollution and Human Health Risk)
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Open AccessArticle The Impact of a Local Development Project on Social Capital: Evidence from the Bohol Irrigation Scheme in the Philippines
Water 2017, 9(3), 202; doi:10.3390/w9030202
Received: 5 December 2016 / Revised: 6 March 2017 / Accepted: 7 March 2017 / Published: 10 March 2017
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Abstract
The purpose of this paper is to investigate the connection between local development projects and the residents’ social capital in Bohol, The Philippines. From this perspective, we hypothesized that social behaviors of local farmers are influenced by the availability of canal irrigation due
[...] Read more.
The purpose of this paper is to investigate the connection between local development projects and the residents’ social capital in Bohol, The Philippines. From this perspective, we hypothesized that social behaviors of local farmers are influenced by the availability of canal irrigation due to the collective water management required in irrigated societies. By combining the results of the ultimatum game (UG) with a household survey on 245 villagers in Bohol, this paper (1) measures the degree of social capital at the individual level and (2) quantifies the effects of irrigation on social capital by controlling household as well as individual characteristics. Moreover, we employed a Spatial Autoregressive model to explore the spatial effects and social contexts of farmers’ behavioral patterns. The empirical results show that the level of measured social behavior is strongly associated with access to community irrigation water and asset holdings. Additionally, increased physical distance between residents leads to a decrease in social capital, or interdependency, among them. The results suggest that community engagement (e.g., irrigation management committee and turnout service association) with local development projects would not only improve agricultural productivity but also enhance social relationships among farmers, highlighting its importance. Full article
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Open AccessArticle Microsatellites Reveal Genetic Homogeneity among Outbreak Populations of Crown-of-Thorns Starfish (Acanthaster cf. solaris) on Australia’s Great Barrier Reef
Diversity 2017, 9(1), 16; doi:10.3390/d9010016
Received: 30 November 2016 / Revised: 5 March 2017 / Accepted: 7 March 2017 / Published: 10 March 2017
Cited by 1 | Viewed by 539 | PDF Full-text (804 KB) | HTML Full-text | XML Full-text | Supplementary Files
Abstract
Specific patterns in the initiation and spread of reef-wide outbreaks of crown-of-thorns starfish are important, both to understand potential causes (or triggers) of outbreaks and to develop more effective and highly targeted management and containment responses. Using analyses of genetic diversity and structure
[...] Read more.
Specific patterns in the initiation and spread of reef-wide outbreaks of crown-of-thorns starfish are important, both to understand potential causes (or triggers) of outbreaks and to develop more effective and highly targeted management and containment responses. Using analyses of genetic diversity and structure (based on 17 microsatellite loci), this study attempted to resolve the specific origin for recent outbreaks of crown-of-thorns on Australia’s Great Barrier Reef (GBR). We assessed the genetic structure amongst 2705 starfish collected from 13 coral reefs in four regions that spanned ~1000 km of the GBR. Our results indicate that populations sampled across the full length of the GBR are genetically homogeneous (G’ST = −0.001; p = 0.948) with no apparent genetic structure between regions. Approximate Bayesian computational analyses suggest that all sampled populations had a common origin and that current outbreaking populations of crown-of-thorns starfish (CoTS) in the Swains are not independent of outbreak populations in the northern GBR. Despite hierarchical sampling and large numbers of CoTS genotyped from individual reefs and regions, limited genetic structure meant we were unable to determine a putative source population for the current outbreak of CoTS on the GBR. The very high genetic homogeneity of sampled populations and limited evidence of inbreeding indicate rapid expansion in population size from multiple, undifferentiated latent populations. Full article
(This article belongs to the Special Issue Biology, Ecology and Management of Crown-of-Thorns Starfish)
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Open AccessArticle Participatory Democracy, Community Organizing and the Community Assessment of Freeway Exposure and Health (CAFEH) Partnership
Int. J. Environ. Res. Public Health 2017, 14(2), 149; doi:10.3390/ijerph14020149
Received: 23 December 2016 / Revised: 26 January 2017 / Accepted: 31 January 2017 / Published: 4 February 2017
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Abstract
Background: Conflicting interests, power imbalance and relationships characterized by distrust are just a few of the many challenges community–academic research partnerships face. In addition, the time it takes to build relationships is often overlooked, which further complicates matters and can leave well-intentioned individuals
[...] Read more.
Background: Conflicting interests, power imbalance and relationships characterized by distrust are just a few of the many challenges community–academic research partnerships face. In addition, the time it takes to build relationships is often overlooked, which further complicates matters and can leave well-intentioned individuals re-creating oppressive conditions through inauthentic partnerships. This paper presents a novel approach of using meeting minutes to explore partnership dynamics. The Community Assessment of Freeway Exposure and Health (CAFEH) partnership is used as an illustrative case study to identify how community academic partnerships overcome the challenges associated with community-based participatory research (CBPR). CAFEH is a study of ultrafine particle exposure (UFP) near highways in the Boston, MA area. Methods: Qualitative analysis was applied to meeting minutes and process evaluation reports from the first three years of the CAFEH study (n = 73 files). In addition, a group meeting was held with project partners in order to contextualize the findings from the document analysis. Results: The three most commonly referenced challenges included language barriers, the overall project structure and budgetary constraints. Meanwhile, a heavy emphasis on process and an approach steeped in participatory democracy facilitated CAFEH’s ability to overcome these challenges, as well as sustain and augment strong partnership ties. Conclusions: This experience suggests that leadership that incorporates an organizing approach and a transformational style facilitates CBPR processes and helps teams surmount challenges. Full article
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Open AccessArticle Creep Deformation by Dislocation Movement in Waspaloy
Materials 2017, 10(1), 61; doi:10.3390/ma10010061
Received: 25 October 2016 / Revised: 5 January 2017 / Accepted: 5 January 2017 / Published: 12 January 2017
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Abstract
Creep tests of the polycrystalline nickel alloy Waspaloy have been conducted at Swansea University, for varying stress conditions at 700 °C. Investigation through use of Transmission Electron Microscopy at Cambridge University has examined the dislocation networks formed under these conditions, with particular attention
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Creep tests of the polycrystalline nickel alloy Waspaloy have been conducted at Swansea University, for varying stress conditions at 700 °C. Investigation through use of Transmission Electron Microscopy at Cambridge University has examined the dislocation networks formed under these conditions, with particular attention paid to comparing tests performed above and below the yield stress. This paper highlights how the dislocation structures vary throughout creep and proposes a dislocation mechanism theory for creep in Waspaloy. Activation energies are calculated through approaches developed in the use of the recently formulated Wilshire Equations, and are found to differ above and below the yield stress. Low activation energies are found to be related to dislocation interaction with γ′ precipitates below the yield stress. However, significantly increased dislocation densities at stresses above yield cause an increase in the activation energy values as forest hardening becomes the primary mechanism controlling dislocation movement. It is proposed that the activation energy change is related to the stress increment provided by work hardening, as can be observed from Ti, Ni and steel results. Full article
(This article belongs to the Special Issue The Life of Materials at High Temperatures)
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Open AccessArticle Public Interest in Microclimate Data in Knoxville, Tennessee, USA
Sustainability 2017, 9(1), 23; doi:10.3390/su9010023
Received: 10 November 2016 / Revised: 19 December 2016 / Accepted: 22 December 2016 / Published: 24 December 2016
Cited by 1 | Viewed by 566 | PDF Full-text (198 KB) | HTML Full-text | XML Full-text
Abstract
New technologies can sense urban environmental conditions at finer scales than previously possible. This has paved the way for monitoring microclimates between and within neighborhoods. Equally vital, though much less studied, is stakeholder engagement in understanding and using such data. This study examines
[...] Read more.
New technologies can sense urban environmental conditions at finer scales than previously possible. This has paved the way for monitoring microclimates between and within neighborhoods. Equally vital, though much less studied, is stakeholder engagement in understanding and using such data. This study examines interests and preferences for accessing neighborhood-scale microclimate data among residents of Knoxville, Tennessee, USA. Data are from randomly sampled phone surveys (N = 200) and purposively sampled focus group participants (N = 25). Survey participants expressed high interest in neighborhood air quality, temperature, and rainfall. Focus groups revealed four themes for designing smartphone applications or websites for neighborhood-scale data: easy access to integrated data, clear and intuitive design, information for everyday living and healthy behavior, and tools for civic engagement. Results support the value of creating meaningful, usable science interfaces with which the public can readily engage. Full article
(This article belongs to the Section Sustainable Education and Approaches)
Open AccessArticle Effect of Timber Harvest Intensities and Fertilizer Application on Stocks of Soil C, N, P, and S
Forests 2016, 7(12), 319; doi:10.3390/f7120319
Received: 12 September 2016 / Revised: 2 December 2016 / Accepted: 12 December 2016 / Published: 21 December 2016
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The purpose of this study was to determine the stocks of available P and S, total N, and oxidizable C at depth in an Oxisol cultivated with Eucalyptus in Brazil following different timber harvest intensities and fertilizer application over 12 years. The harvest
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The purpose of this study was to determine the stocks of available P and S, total N, and oxidizable C at depth in an Oxisol cultivated with Eucalyptus in Brazil following different timber harvest intensities and fertilizer application over 12 years. The harvest regimes considered were (i) conventional stem-only harvest (all forest residues were maintained on the soil); (ii) whole-tree harvest (only litter was maintained on the soil—all slash, stemwood, and bark were removed); and (iii) whole-tree harvest + litter layer removal. The site was planted in 2004 considering three timber harvest intensities, some with and some without N and P fertilization. In 2012 the experiment was reinstalled, and all the treatments were reapplied in the each plot. From 2004 to 2016, nutrient accumulation and soil N, P, and S stocks were assessed in the 0–20 cm layer. Also in 2016, soil N, P, S, and oxidizable C stocks were measured to 2 m depth. For each treatment, the net balance of N, P, and S were calculated from soil stocks and harvest outputs during two forest rotations. A reduction in all nutrient stocks was observed in the 0–20 cm layer for all treatments. For N, this reduction was 20% smaller in the stem-only harvest treatment and 40% higher when no N fertilizer was applied, when compared to other treatments. Stem-only harvest treatment was observed to reduce the loss of N, P, and S due to harvest by 300, 30, and 25 kg·ha−1, respectively, when compared to the whole-tree harvest + litter layer removal treatment. Full article
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Open AccessArticle Safe Synthesis of Alkylhydroxy and Alkylamino Nitramines
Molecules 2016, 21(12), 1738; doi:10.3390/molecules21121738
Received: 11 November 2016 / Revised: 6 December 2016 / Accepted: 12 December 2016 / Published: 16 December 2016
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Abstract
Three different protocols for the syntheses of hydroxyalkylnitramines are presented and compared. Safety issues regarding the synthesis of nitramines are also discussed. Full article
(This article belongs to the Section Green Chemistry)
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Open AccessArticle Investigating Effects of Proteasome Inhibitor on Multiple Myeloma Cells Using Confocal Raman Microscopy
Sensors 2016, 16(12), 2133; doi:10.3390/s16122133
Received: 19 November 2016 / Revised: 5 December 2016 / Accepted: 12 December 2016 / Published: 14 December 2016
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Abstract
Due to its label-free and non-destructive nature, applications of Raman spectroscopic imaging in monitoring therapeutic responses at the cellular level are growing. We have recently developed a high-speed confocal Raman microscopy system to image living biological specimens with high spatial resolution and sensitivity.
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Due to its label-free and non-destructive nature, applications of Raman spectroscopic imaging in monitoring therapeutic responses at the cellular level are growing. We have recently developed a high-speed confocal Raman microscopy system to image living biological specimens with high spatial resolution and sensitivity. In the present study, we have applied this system to monitor the effects of Bortezomib, a proteasome inhibitor drug, on multiple myeloma cells. Cluster imaging followed by spectral profiling suggest major differences in the nuclear and cytoplasmic contents of cells due to drug treatment that can be monitored with Raman spectroscopy. Spectra were also acquired from group of cells and feasibility of discrimination among treated and untreated cells using principal component analysis (PCA) was accessed. Findings support the feasibility of Raman technologies as an alternate, novel method for monitoring live cell dynamics with minimal external perturbation. Full article
(This article belongs to the Special Issue Label-Free Optical Biosensors)
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Open AccessReview Atomic Layer Deposition of Silicon Nitride Thin Films: A Review of Recent Progress, Challenges, and Outlooks
Materials 2016, 9(12), 1007; doi:10.3390/ma9121007
Received: 8 November 2016 / Revised: 1 December 2016 / Accepted: 6 December 2016 / Published: 12 December 2016
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Abstract
With the continued miniaturization of devices in the semiconductor industry, atomic layer deposition (ALD) of silicon nitride thin films (SiNx) has attracted great interest due to the inherent benefits of this process compared to other silicon nitride thin film deposition techniques.
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With the continued miniaturization of devices in the semiconductor industry, atomic layer deposition (ALD) of silicon nitride thin films (SiNx) has attracted great interest due to the inherent benefits of this process compared to other silicon nitride thin film deposition techniques. These benefits include not only high conformality and atomic-scale thickness control, but also low deposition temperatures. Over the past 20 years, recognition of the remarkable features of SiNx ALD, reinforced by experimental and theoretical investigations of the underlying surface reaction mechanism, has contributed to the development and widespread use of ALD SiNx thin films in both laboratory studies and industrial applications. Such recognition has spurred ever-increasing opportunities for the applications of the SiNx ALD technique in various arenas. Nevertheless, this technique still faces a number of challenges, which should be addressed through a collaborative effort between academia and industry. It is expected that the SiNx ALD will be further perceived as an indispensable technique for scaling next-generation ultra-large-scale integration (ULSI) technology. In this review, the authors examine the current research progress, challenges and future prospects of the SiNx ALD technique. Full article
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Open AccessReview Checkpoints to the Brain: Directing Myeloid Cell Migration to the Central Nervous System
Int. J. Mol. Sci. 2016, 17(12), 2030; doi:10.3390/ijms17122030
Received: 30 September 2016 / Revised: 23 November 2016 / Accepted: 25 November 2016 / Published: 2 December 2016
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Abstract
Myeloid cells are a unique subset of leukocytes with a diverse array of functions within the central nervous system during health and disease. Advances in understanding of the unique properties of these cells have inspired interest in their use as delivery vehicles for
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Myeloid cells are a unique subset of leukocytes with a diverse array of functions within the central nervous system during health and disease. Advances in understanding of the unique properties of these cells have inspired interest in their use as delivery vehicles for therapeutic genes, proteins, and drugs, or as “assistants” in the clean-up of aggregated proteins and other molecules when existing drainage systems are no longer adequate. The trafficking of myeloid cells from the periphery to the central nervous system is subject to complex cellular and molecular controls with several ‘checkpoints’ from the blood to their destination in the brain parenchyma. As important components of the neurovascular unit, the functional state changes associated with lineage heterogeneity of myeloid cells are increasingly recognized as important for disease progression. In this review, we discuss some of the cellular elements associated with formation and function of the neurovascular unit, and present an update on the impact of myeloid cells on central nervous system (CNS) diseases in the laboratory and the clinic. We then discuss emerging strategies for harnessing the potential of site-directed myeloid cell homing to the CNS, and identify promising avenues for future research, with particular emphasis on the importance of untangling the functional heterogeneity within existing myeloid subsets. Full article
(This article belongs to the Special Issue Advances in Cell Transplantation)
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Open AccessReview Practical Recommendations for Diagnosis and Management of Respiratory Muscle Weakness in Late-Onset Pompe Disease
Int. J. Mol. Sci. 2016, 17(10), 1735; doi:10.3390/ijms17101735
Received: 28 August 2016 / Revised: 29 September 2016 / Accepted: 10 October 2016 / Published: 17 October 2016
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Abstract
Pompe disease is an autosomal-recessive lysosomal storage disorder characterized by progressive myopathy with proximal muscle weakness, respiratory muscle dysfunction, and cardiomyopathy (in infants only). In patients with juvenile or adult disease onset, respiratory muscle weakness may decline more rapidly than overall neurological disability.
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Pompe disease is an autosomal-recessive lysosomal storage disorder characterized by progressive myopathy with proximal muscle weakness, respiratory muscle dysfunction, and cardiomyopathy (in infants only). In patients with juvenile or adult disease onset, respiratory muscle weakness may decline more rapidly than overall neurological disability. Sleep-disordered breathing, daytime hypercapnia, and the need for nocturnal ventilation eventually evolve in most patients. Additionally, respiratory muscle weakness leads to decreased cough and impaired airway clearance, increasing the risk of acute respiratory illness. Progressive respiratory muscle weakness is a major cause of morbidity and mortality in late-onset Pompe disease even if enzyme replacement therapy has been established. Practical knowledge of how to detect, monitor and manage respiratory muscle involvement is crucial for optimal patient care. A multidisciplinary approach combining the expertise of neurologists, pulmonologists, and intensive care specialists is needed. Based on the authors’ own experience in over 200 patients, this article conveys expert recommendations for the diagnosis and management of respiratory muscle weakness and its sequelae in late-onset Pompe disease. Full article
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Open AccessFeature PaperArticle “Church” in Black and White: The Organizational Lives of Young Adults
Religions 2016, 7(7), 90; doi:10.3390/rel7070090
Received: 12 January 2016 / Revised: 30 May 2016 / Accepted: 30 June 2016 / Published: 12 July 2016
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Abstract
The religious lives of young adults have generally been investigated by examining what young people believe and their self-reported religious practices. Far less is known about young adults’ organizational involvement and its impact on religious identities and ideas about religious commitment. Using data
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The religious lives of young adults have generally been investigated by examining what young people believe and their self-reported religious practices. Far less is known about young adults’ organizational involvement and its impact on religious identities and ideas about religious commitment. Using data from site visit observations of religious congregations and organizations, and individual and focus group interviews with college-age black and white Christians, we find differences in how black and white students talk about their religious involvement; and with how they are incorporated into the lives of their congregations. White students tended to offer “organizational biographies” chronicling the contours of belonging as well as disengagement, and emphasizing the importance of fulfilling personal needs as a criterion for maintaining involvement. On the other hand, black students used “family” and “home” language and metaphors to describe how their religious involvement, a voluntary choice, was tied to a sense of “calling” and community. We show that this variation is aligned with organizational differences in black and white congregations that situate white youth as separate and black youth as integrated into the larger church community. Full article
(This article belongs to the Special Issue Youth, Emerging Adults, Faith, and Giving)
Open AccessArticle Improvements in Cycling but Not Handcycling 10 km Time Trial Performance in Habitual Caffeine Users
Nutrients 2016, 8(7), 393; doi:10.3390/nu8070393
Received: 9 May 2016 / Revised: 9 June 2016 / Accepted: 20 June 2016 / Published: 25 June 2016
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Abstract
Caffeine supplementation during whole-/lower-body exercise is well-researched, yet evidence of its effect during upper-body exercise is equivocal. The current study explored the effects of caffeine on cycling/handcycling 10 km time trial (TT) performance in habitual caffeine users. Eleven recreationally trained males (mean (SD)
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Caffeine supplementation during whole-/lower-body exercise is well-researched, yet evidence of its effect during upper-body exercise is equivocal. The current study explored the effects of caffeine on cycling/handcycling 10 km time trial (TT) performance in habitual caffeine users. Eleven recreationally trained males (mean (SD) age 24 (4) years, body mass 85.1 (14.6) kg, cycling/handcycling peak oxygen uptake ( V · peak) 42.9 (7.3)/27.6 (5.1) mL∙kg∙min−1, 160 (168) mg/day caffeine consumption) completed two maximal incremental tests and two familiarization sessions. During four subsequent visits, participants cycled/handcycled for 30 min at 65% mode-specific V · peak (preload) followed by a 10 km TT following the ingestion of 4 mg∙kg−1 caffeine (CAF) or placebo (PLA). Caffeine significantly improved cycling (2.0 (2.0)%; 16:35 vs. 16:56 min; p = 0.033) but not handcycling (1.8 (3.0)%; 24:10 vs. 24:36 min; p = 0.153) TT performance compared to PLA. The improvement during cycling can be attributed to the increased power output during the first and last 2 km during CAF. Higher blood lactate concentration (Bla) was reported during CAF compared to PLA (p < 0.007) and was evident 5 min post-TT during cycling (11.2 ± 2.6 and 8.8 ± 3.2 mmol/L; p = 0.001) and handcycling (10.6 ± 2.5 and 9.2 ± 2.9 mmol/L; p = 0.006). Lower overall ratings of perceived exertion (RPE) were seen following CAF during the preload (p < 0.05) but not post-TT. Lower peripheral RPE were reported at 20 min during cycling and at 30 min during handcycling, and lower central RPE was seen at 30 min during cycling (p < 0.05). Caffeine improved cycling but not handcycling TT performance. The lack of improvement during handcycling may be due to the smaller active muscle mass, elevated (Bla) and/or participants’ training status. Full article
(This article belongs to the Special Issue Nutrition, Health and Athletic Performance)
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Open AccessReview The Role of Cell-Penetrating Peptide and Transferrin on Enhanced Delivery of Drug to Brain
Int. J. Mol. Sci. 2016, 17(6), 806; doi:10.3390/ijms17060806
Received: 1 April 2016 / Revised: 29 April 2016 / Accepted: 13 May 2016 / Published: 25 May 2016
Cited by 4 | Viewed by 1216 | PDF Full-text (910 KB) | HTML Full-text | XML Full-text
Abstract
The challenge of effectively delivering therapeutic agents to brain has led to an entire field of active research devoted to overcome the blood brain barrier (BBB) and efficiently deliver drugs to brain. This review focusses on exploring the facets of a novel platform
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The challenge of effectively delivering therapeutic agents to brain has led to an entire field of active research devoted to overcome the blood brain barrier (BBB) and efficiently deliver drugs to brain. This review focusses on exploring the facets of a novel platform designed for the delivery of drugs to brain. The platform was constructed based on the hypothesis that a combination of receptor-targeting agent, like transferrin protein, and a cell-penetrating peptide (CPP) will enhance the delivery of associated therapeutic cargo across the BBB. The combination of these two agents in a delivery vehicle has shown significantly improved (p < 0.05) translocation of small molecules and genes into brain as compared to the vehicle with only receptor-targeting agents. The comprehensive details of the uptake mechanisms and properties of various CPPs are illustrated here. The application of this technology, in conjunction with nanotechnology, can potentially open new horizons for the treatment of central nervous system disorders. Full article
(This article belongs to the Special Issue Cell-Penetrating Peptides 2016)
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Open AccessArticle Stable Gene Regulatory Network Modeling From Steady-State Data
Bioengineering 2016, 3(2), 12; doi:10.3390/bioengineering3020012
Received: 19 November 2015 / Revised: 9 March 2016 / Accepted: 6 April 2016 / Published: 19 April 2016
Cited by 2 | Viewed by 1653 | PDF Full-text (978 KB) | HTML Full-text | XML Full-text
Abstract
Gene regulatory networks represent an abstract mapping of gene regulations in living cells. They aim to capture dependencies among molecular entities such as transcription factors, proteins and metabolites. In most applications, the regulatory network structure is unknown, and has to be reverse engineered
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Gene regulatory networks represent an abstract mapping of gene regulations in living cells. They aim to capture dependencies among molecular entities such as transcription factors, proteins and metabolites. In most applications, the regulatory network structure is unknown, and has to be reverse engineered from experimental data consisting of expression levels of the genes usually measured as messenger RNA concentrations in microarray experiments. Steady-state gene expression data are obtained from measurements of the variations in expression activity following the application of small perturbations to equilibrium states in genetic perturbation experiments. In this paper, the least absolute shrinkage and selection operator-vector autoregressive (LASSO-VAR) originally proposed for the analysis of economic time series data is adapted to include a stability constraint for the recovery of a sparse and stable regulatory network that describes data obtained from noisy perturbation experiments. The approach is applied to real experimental data obtained for the SOS pathway in Escherichia coli and the cell cycle pathway for yeast Saccharomyces cerevisiae. Significant features of this method are the ability to recover networks without inputting prior knowledge of the network topology, and the ability to be efficiently applied to large scale networks due to the convex nature of the method. Full article
Open AccessArticle Association between Empirically Estimated Monsoon Dynamics and Other Weather Factors and Historical Tea Yields in China: Results from a Yield Response Model
Climate 2016, 4(2), 20; doi:10.3390/cli4020020
Received: 10 November 2015 / Revised: 23 March 2016 / Accepted: 25 March 2016 / Published: 8 April 2016
Cited by 3 | Viewed by 1367 | PDF Full-text (3619 KB) | HTML Full-text | XML Full-text | Supplementary Files
Abstract
Farmers in China’s tea-growing regions report that monsoon dynamics and other weather factors are changing and that this is affecting tea harvest decisions. To assess the effect of climate change on tea production in China, this study uses historical weather and production data
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Farmers in China’s tea-growing regions report that monsoon dynamics and other weather factors are changing and that this is affecting tea harvest decisions. To assess the effect of climate change on tea production in China, this study uses historical weather and production data from 1980 to 2011 to construct a yield response model that estimates the partial effect of weather factors on tea yields in China, with a specific focus on East Asian Monsoon dynamics. Tea (Camellia sinensis (L.) Kunze) has not been studied using these methods even though it is an important crop for human nutrition and the economic well-being of rural communities in many countries. Previous studies have approximated the monsoon period using historical average onset and retreat dates, which we believe limits our understanding of how changing monsoon patterns affect crop productivity. In our analysis, we instead estimate the monsoon season across China’s tea growing regions empirically by identifying the unknown breakpoints in the year-by-province cumulative precipitation. We find that a 1% increase in the monsoon retreat date is associated with 0.481%–0.535% reduction in tea yield. In the previous year, we also find that a 1% increase in the date of the monsoon retreat is associated with a 0.604% decrease in tea yields. For precipitation, we find that a 1% increase in average daily precipitation occurring during the monsoon period is associated with a 0.184%–0.262% reduction in tea yields. In addition, our models show that 1% increase in the average daily monsoon precipitation from the previous growing season is associated with 0.258%–0.327% decline in yields. We also find that a 1% decrease in solar radiation in the previous growing season is associated with 0.554%-0.864% decrease in tea yields. These findings suggest the need for adaptive management and harvesting strategies given climate change projections and the known negative association between excess rainfall and delayed monsoon retreat on tea quality and yield. Full article
(This article belongs to the Special Issue Climate Change on Crops, Foods and Diets)
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Open AccessReview Cell Fate Decisions During Breast Cancer Development
J. Dev. Biol. 2016, 4(1), 4; doi:10.3390/jdb4010004
Received: 21 November 2015 / Revised: 11 January 2016 / Accepted: 20 January 2016 / Published: 22 January 2016
Cited by 2 | Viewed by 1248 | PDF Full-text (749 KB) | HTML Full-text | XML Full-text
Abstract
During the formation of breast cancer, many genes become altered as cells evolve progressively from normal to a pre-malignant to a malignant state of growth. How mutations in genes lead to specific subtypes of human breast cancer is only partially understood. Here we
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During the formation of breast cancer, many genes become altered as cells evolve progressively from normal to a pre-malignant to a malignant state of growth. How mutations in genes lead to specific subtypes of human breast cancer is only partially understood. Here we review how initial genetic or epigenetic alterations within mammary epithelial cells (MECs) can alter cell fate decisions and put pre-malignant cells on a path towards cancer development with specific phenotypes. Understanding the early stages of breast cancer initiation and progression and how normal developmental processes are hijacked during transformation has significant implications for improving early detection and prevention of breast cancer. In addition, insights gleaned from this understanding may also be important for developing subtype-specific treatment options. Full article
(This article belongs to the Special Issue Cell Fate Decisions in Development and Disease)
Open AccessArticle Cross-Sectional Associations between Empirically-Derived Dietary Patterns and Indicators of Disease Risk among University Students
Nutrients 2016, 8(1), 3; doi:10.3390/nu8010003
Received: 22 November 2015 / Revised: 2 December 2015 / Accepted: 10 December 2015 / Published: 24 December 2015
Cited by 3 | Viewed by 1387 | PDF Full-text (375 KB) | HTML Full-text | XML Full-text | Supplementary Files
Abstract
The transition from adolescence to adulthood is a unique period during which lifelong dietary habits are shaped. Dietary patterns (DPs) among young adults attending college have not been adequately described, and associations between DPs and indicators of disease risk are not well understood
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The transition from adolescence to adulthood is a unique period during which lifelong dietary habits are shaped. Dietary patterns (DPs) among young adults attending college have not been adequately described, and associations between DPs and indicators of disease risk are not well understood in this age group. Dietary data were collected from undergraduates participating in the Tufts Longitudinal Health Study (TLHS; 1998–2007) by Food Frequency Questionnaire (FFQ; n = 1323). DPs were derived using principal components analysis with varimax rotation. Scree plots; eigenvalues; factor loadings; and previous studies were used to determine and label the DPs retained. Cross-sectional relationships between DP scores and anthropometric measures (percent body fat (PBF) and (BMI) and lipid biomarkers (total; HDL and LDL cholesterol; and triglycerides) were assessed with multivariable regression models; adjusted for demographics; physical activity; smoking; intention to gain/lose weight; and total energy intake. Effect modification by sex was tested. Three DPs were identified: Prudent; Western; and Alcohol. Greater adherence to the Prudent DP was associated with favorable anthropometric outcomes. The Alcohol DP was associated with a favorable lipid profile. Associations between the Western DP and blood lipids differed by sex; with unfavorable impact observed only among males. Our findings add to the literature linking DPs in young adults with measurable adiposity and cardiometabolic outcomes; suggesting that improving nutrition among college students could reduce chronic disease risk. Full article
(This article belongs to the Special Issue Dietary Pattern and Health)
Open AccessProject Report Innovation in OGC: The Interoperability Program
ISPRS Int. J. Geo-Inf. 2015, 4(4), 2362-2378; doi:10.3390/ijgi4042362
Received: 23 May 2015 / Revised: 25 September 2015 / Accepted: 14 October 2015 / Published: 30 October 2015
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Abstract
The OGC Interoperability Program is a source of innovation in the development of open standards. The approach to innovation is based on hands-on; collaborative engineering leading to more mature standards and implementations. The process of the Interoperability Program engages a community of sponsors
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The OGC Interoperability Program is a source of innovation in the development of open standards. The approach to innovation is based on hands-on; collaborative engineering leading to more mature standards and implementations. The process of the Interoperability Program engages a community of sponsors and participants based on an economic model that benefits all involved. Each initiative begins with an innovative approach to identify interoperability needs followed by agile software development to advance the state of technology to the benefit of society. Over eighty initiatives have been conducted in the Interoperability Program since the breakthrough Web Mapping Testbed began the program in 1999. OGC standards that were initiated in Interoperability Program are the basis of two thirds of the certified compliant products. Full article
(This article belongs to the Special Issue 20 Years of OGC: Open Geo-Data, Software, and Standards)
Open AccessArticle Changing Perceptions of Forest Value and Attitudes toward Management of a Recently Established Nature Reserve: A Case Study in Southwest China
Forests 2015, 6(9), 3136-3164; doi:10.3390/f6093136
Received: 30 April 2015 / Accepted: 29 August 2015 / Published: 9 September 2015
Cited by 1 | Viewed by 966 | PDF Full-text (877 KB) | HTML Full-text | XML Full-text
Abstract
Identifying the main sources of conflict and understanding the relationships between protected areas and local communities are critical to conflict resolution related to protected area management. We surveyed and assessed the perceptions of local people related to forest values of the Bulong Nature
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Identifying the main sources of conflict and understanding the relationships between protected areas and local communities are critical to conflict resolution related to protected area management. We surveyed and assessed the perceptions of local people related to forest values of the Bulong Nature Reserve (BNR), Yunnan, China, and their attitudes toward forest management of the recently-established nature reserve. Factors influencing the differences in perceptions and attitudes were investigated. Our results indicated local residents preferred the economic value of forests, and they perceived more forest values after reserve establishment than before, especially for ecological services. Interviewees believed the value of the forests have increased, and predicted that the forest will have increased importance to their livelihoods and health in the future. Nonetheless, the majority of interviewees were dissatisfied with current reserve management. Variation in these perceptions and attitudes were related to several social variables: age, gender, education, and distance from the reserve. Embedding the findings of the present study, specifically the perceptions and attitudes of local people, into management guidelines for mitigation of potential conflicts is proposed and should help managers to achieve biodiversity-related goals. This study offers new insights related to the identification of the underlying sources of conflict in forest management and provides a better understanding of the relationship between local people and protected areas. The study also contributes to the literature on forest values of indigenous populations by examining those of remote, rural populations in China. Full article
Open AccessArticle Assessing Douglas-Fir Seedling Establishment Using Two Modified Forestry Reclamation Approaches in the Pacific Northwest
Forests 2015, 6(8), 2836-2852; doi:10.3390/f6082836
Received: 3 July 2015 / Revised: 6 August 2015 / Accepted: 17 August 2015 / Published: 21 August 2015
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Abstract
The Forestry Reclamation Approach uses uncompacted, mounded spoils to reforest mined-land and has been successful in hardwood forests in the Appalachian region. A surface coalmine reclamation site in the Pacific Northwest was used to compare the site’s standard reclamation approach (Reference) with a
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The Forestry Reclamation Approach uses uncompacted, mounded spoils to reforest mined-land and has been successful in hardwood forests in the Appalachian region. A surface coalmine reclamation site in the Pacific Northwest was used to compare the site’s standard reclamation approach (Reference) with a modified version of the Forestry Reclamation Approach (FRA) along with a modified FRA treatment that also incorporated an amendment of bottom ash from the coal burning power plant on-site (FRA + Ash). Survival and growth were followed for three growing seasons in bareroot and container Douglas-fir seedlings. Soil characteristics and understory cover were also assessed. Considerable variation in microsite characteristics was observed in the study area. Container seedlings did not improve survival compared to bareroot seedlings. In the soil reclamation treatments, seedling survival was significantly higher in FRA + Ash treatments compared to FRA and Reference treatments at the end of the second growing season. Survival declined in each year of the study, but the order of treatment effectiveness did not change. Relativized growth increment was significantly higher in the FRA treatment compared to both the Reference and FRA + Ash treatments during the third growing season. Understory cover was established after three years, but varied substantially across the study area. Full article
Open AccessReview Immune Modulation by Vitamin D and Its Relevance to Food Allergy
Nutrients 2015, 7(8), 6088-6108; doi:10.3390/nu7085271
Received: 8 May 2015 / Revised: 16 July 2015 / Accepted: 20 July 2015 / Published: 27 July 2015
Cited by 9 | Viewed by 2309 | PDF Full-text (288 KB) | HTML Full-text | XML Full-text
Abstract
Apart from its classical function in bone and calcium metabolism, vitamin D is also involved in immune regulation and has been linked to various cancers, immune disorders and allergic diseases. Within the innate and adaptive immune systems, the vitamin D receptor and enzymes
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Apart from its classical function in bone and calcium metabolism, vitamin D is also involved in immune regulation and has been linked to various cancers, immune disorders and allergic diseases. Within the innate and adaptive immune systems, the vitamin D receptor and enzymes in monocytes, dendritic cells, epithelial cells, T lymphocytes and B lymphocytes mediate the immune modulatory actions of vitamin D. Vitamin D insufficiency/deficiency early in life has been identified as one of the risk factors for food allergy. Several studies have observed an association between increasing latitude and food allergy prevalence, plausibly linked to lower ultraviolet radiation (UVR) exposure and vitamin D synthesis in the skin. Along with mounting epidemiological evidence of a link between vitamin D status and food allergy, mice and human studies have shed light on the modulatory properties of vitamin D on the innate and adaptive immune systems. This review will summarize the literature on the metabolism and immune modulatory properties of vitamin D, with particular reference to food allergy. Full article
(This article belongs to the Special Issue Immune Regulation by Vitamin D)
Open AccessReview Plasmodium falciparum Thioredoxin Reductase (PfTrxR) and Its Role as a Target for New Antimalarial Discovery
Molecules 2015, 20(6), 11459-11473; doi:10.3390/molecules200611459
Received: 12 May 2015 / Revised: 12 June 2015 / Accepted: 17 June 2015 / Published: 22 June 2015
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Abstract
The growing resistance to current antimalarial drugs is a major concern for global public health. The pressing need for new antimalarials has led to an increase in research focused on the Plasmodium parasites that cause human malaria. Thioredoxin reductase (TrxR), an enzyme needed
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The growing resistance to current antimalarial drugs is a major concern for global public health. The pressing need for new antimalarials has led to an increase in research focused on the Plasmodium parasites that cause human malaria. Thioredoxin reductase (TrxR), an enzyme needed to maintain redox equilibrium in Plasmodium species, is a promising target for new antimalarials. This review paper provides an overview of the structure and function of TrxR, discusses similarities and differences between the thioredoxin reductases (TrxRs) of different Plasmodium species and the human forms of the enzyme, gives an overview of modeling Plasmodium infections in animals, and suggests the role of Trx functions in antimalarial drug resistance. TrxR of Plasmodium falciparum is a central focus of this paper since it is the only Plasmodium TrxR that has been crystallized and P. falciparum is the species that causes most malaria cases. It is anticipated that the information summarized here will give insight and stimulate new directions in which research might be most beneficial. Full article
(This article belongs to the Special Issue Thioredoxin and Glutathione Systems)
Open AccessReview Advancements in the Management of HPV-Associated Head and Neck Squamous Cell Carcinoma
J. Clin. Med. 2015, 4(5), 822-831; doi:10.3390/jcm4050822
Received: 24 October 2014 / Revised: 5 March 2015 / Accepted: 6 March 2015 / Published: 24 April 2015
Cited by 1 | Viewed by 1141 | PDF Full-text (56 KB) | HTML Full-text | XML Full-text
Abstract
Head and neck carcinomas have long been linked to alcohol and tobacco abuse; however, within the last two decades, the human papillomavirus (HPV) has emerged as a third etiology and is specifically associated with head and neck squamous cell carcinomas (HNSCC). In this
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Head and neck carcinomas have long been linked to alcohol and tobacco abuse; however, within the last two decades, the human papillomavirus (HPV) has emerged as a third etiology and is specifically associated with head and neck squamous cell carcinomas (HNSCC). In this anatomical region, the oncogenic HPV-16 mediates transformation and immortalization of epithelium, most commonly in the oropharynx. Nevertheless, the recent identification of novel HPV mechanisms thought to be specific to oropharyngeal carcinogenesis has coincided with observations that HPV-associated HNSCC has differing clinical behavior—in terms of natural history, therapeutic response, and prognosis—than HPV-negative head and neck tumors. Taken together with the growing incidence of HPV transmission in younger populations, these discoveries have sparked a rapid expansion in both laboratory and clinical studies on the infection and disease. Herein, we review the clinical characteristics of HPV-associated HNSCC, with particular emphasis on recent advancements in our understanding of the management of this infectious malignancy. Full article
(This article belongs to the Special Issue Clinical Advances of Human Papillomaviruses)
Open AccessArticle Differential Expression of HERV-K (HML-2) Proviruses in Cells and Virions of the Teratocarcinoma Cell Line Tera-1
Viruses 2015, 7(3), 939-968; doi:10.3390/v7030939
Received: 1 December 2014 / Revised: 9 February 2015 / Accepted: 19 February 2015 / Published: 4 March 2015
Cited by 12 | Viewed by 1805 | PDF Full-text (1923 KB) | HTML Full-text | XML Full-text | Supplementary Files
Abstract
Human endogenous retrovirus (HERV-K (HML-2)) proviruses are among the few endogenous retroviral elements in the human genome that retain coding sequence. HML-2 expression has been widely associated with human disease states, including different types of cancers as well as with HIV-1 infection. Understanding
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Human endogenous retrovirus (HERV-K (HML-2)) proviruses are among the few endogenous retroviral elements in the human genome that retain coding sequence. HML-2 expression has been widely associated with human disease states, including different types of cancers as well as with HIV-1 infection. Understanding of the potential impact of this expression requires that it be annotated at the proviral level. Here, we utilized the high throughput capabilities of next-generation sequencing to profile HML-2 expression at the level of individual proviruses and secreted virions in the teratocarcinoma cell line Tera-1. We identified well-defined expression patterns, with transcripts emanating primarily from two proviruses located on chromosome 22, only one of which was efficiently packaged. Interestingly, there was a preference for transcripts of recently integrated proviruses, over those from other highly expressed but older elements, to be packaged into virions. We also assessed the promoter competence of the 5’ long terminal repeats (LTRs) of expressed proviruses via a luciferase assay following transfection of Tera-1 cells. Consistent with the RNASeq results, we found that the activity of most LTRs corresponded to their transcript levels. Full article
(This article belongs to the Special Issue Endogenous Viruses)
Open AccessReview Expression, Delivery and Function of Insecticidal Proteins Expressed by Recombinant Baculoviruses
Viruses 2015, 7(1), 422-455; doi:10.3390/v7010422
Received: 25 November 2014 / Revised: 6 January 2015 / Accepted: 15 January 2015 / Published: 21 January 2015
Cited by 5 | Viewed by 1889 | PDF Full-text (1260 KB) | HTML Full-text | XML Full-text
Abstract
Since the development of methods for inserting and expressing genes in baculoviruses, a line of research has focused on developing recombinant baculoviruses that express insecticidal peptides and proteins. These recombinant viruses have been engineered with the goal of improving their pesticidal potential by
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Since the development of methods for inserting and expressing genes in baculoviruses, a line of research has focused on developing recombinant baculoviruses that express insecticidal peptides and proteins. These recombinant viruses have been engineered with the goal of improving their pesticidal potential by shortening the time required for infection to kill or incapacitate insect pests and reducing the quantity of crop damage as a consequence. A wide variety of neurotoxic peptides, proteins that regulate insect physiology, degradative enzymes, and other potentially insecticidal proteins have been evaluated for their capacity to reduce the survival time of baculovirus-infected lepidopteran host larvae. Researchers have investigated the factors involved in the efficient expression and delivery of baculovirus-encoded insecticidal peptides and proteins, with much effort dedicated to identifying ideal promoters for driving transcription and signal peptides that mediate secretion of the expressed target protein. Other factors, particularly translational efficiency of transcripts derived from recombinant insecticidal genes and post-translational folding and processing of insecticidal proteins, remain relatively unexplored. The discovery of RNA interference as a gene-specific regulation mechanism offers a new approach for improvement of baculovirus biopesticidal efficacy through genetic modification. Full article
(This article belongs to the Special Issue Insect Viruses and Their Use for Microbial Pest Control)
Open AccessArticle Resolving Early Signaling Events in T-Cell Activation Leading to IL-2 and FOXP3 Transcription
Processes 2014, 2(4), 867-900; doi:10.3390/pr2040867
Received: 29 September 2014 / Revised: 10 November 2014 / Accepted: 13 November 2014 / Published: 25 November 2014
Cited by 2 | Viewed by 1448 | PDF Full-text (2522 KB) | HTML Full-text | XML Full-text
Abstract
Signal intensity and feedback regulation are known to be major factors in the signaling events stemming from the T-cell receptor (TCR) and its various coreceptors, but the exact nature of these relationships remains in question. We present a mathematical model of the complex
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Signal intensity and feedback regulation are known to be major factors in the signaling events stemming from the T-cell receptor (TCR) and its various coreceptors, but the exact nature of these relationships remains in question. We present a mathematical model of the complex signaling network involved in T-cell activation with cross-talk between the Erk, calcium, PKC and mTOR signaling pathways. The model parameters are adjusted to fit new and published data on TCR trafficking, Zap70, calcium, Erk and Isignaling. The regulation of the early signaling events by phosphatases, CD45 and SHP1, and the TCR dynamics are critical to determining the behavior of the model. Additional model corroboration is provided through quantitative and qualitative agreement with experimental data collected under different stimulating and knockout conditions. The resulting model is analyzed to investigate how signal intensity and feedback regulation affect TCR- and coreceptor-mediated signal transduction and their downstream transcriptional profiles to predict the outcome for a variety of stimulatory and knockdown experiments. Analysis of the model shows that: (1) SHP1 negative feedback is necessary for preventing hyperactivity in TCR signaling; (2) CD45 is required for TCR signaling, but also partially suppresses it at high expression levels; and (3) elevated FOXP3 and reduced IL-2 signaling, an expression profile often associated with T regulatory cells (Tregs), is observed when the system is subjected to weak TCR and CD28 costimulation or a severe reduction in CD45 activity. Full article
Open AccessArticle Cryptosporidium and Giardia in Surface Water: A Case Study from Michigan, USA to Inform Management of Rural Water Systems
Int. J. Environ. Res. Public Health 2014, 11(10), 10480-10503; doi:10.3390/ijerph111010480
Received: 31 July 2014 / Revised: 22 September 2014 / Accepted: 29 September 2014 / Published: 14 October 2014
Cited by 5 | Viewed by 1802 | PDF Full-text (1578 KB) | HTML Full-text | XML Full-text | Supplementary Files
Abstract
Cryptosporidium and Giardia pose a threat to human health in rural environments where water supplies are commonly untreated and susceptible to contamination from agricultural animal waste/manure, animal wastewater, septic tank effluents and septage. Our goals for this paper are to: (1) explore the
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Cryptosporidium and Giardia pose a threat to human health in rural environments where water supplies are commonly untreated and susceptible to contamination from agricultural animal waste/manure, animal wastewater, septic tank effluents and septage. Our goals for this paper are to: (1) explore the prevalence of these protozoan parasites, where they are found, in what quantities, and which genotypes are present; (2) examine relationships between disease and land use comparing human health risks between rural and urban environments; and (3) synthesize available information to gain a better understanding of risk and risk management for rural water supplies. Our results indicate that Cryptosporidium and Giardia were more prevalent in rural versus urban environments based on the number of positive samples. Genotyping showed that both the human and animal types of the parasites are found in rural and urban environments. Rural areas had a higher incidence of disease compared to urban areas based on the total number of disease cases. Cryptosporidiosis and giardiasis were both positively correlated (p < 0.001) with urban area, population size, and population density. Finally, a comprehensive strategy that creates knowledge pathways for data sharing among multiple levels of management may improve decision-making for protecting rural water supplies. Full article
(This article belongs to the Special Issue Evaluation of Rural Water Systems and Public Health)
Open AccessArticle The Role of Preference on Outcomes of People Receiving Evidence-Informed Community Wound Care in Their Home or in a Nurse-Clinic Setting: A Cohort Study (n = 230)
Healthcare 2014, 2(3), 401-416; doi:10.3390/healthcare2030401
Received: 13 May 2014 / Revised: 1 August 2014 / Accepted: 4 September 2014 / Published: 19 September 2014
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Abstract
This study followed a cohort of community-dwelling individuals receiving wound-care in a large urban-rural region. During a randomized control trial (RCT) evaluating outcomes of receiving care in a nurse-clinic or at home, many approached were willing to participate if they could choose their
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This study followed a cohort of community-dwelling individuals receiving wound-care in a large urban-rural region. During a randomized control trial (RCT) evaluating outcomes of receiving care in a nurse-clinic or at home, many approached were willing to participate if they could choose their location of care. This provided a unique opportunity to enroll them as a “choice” cohort, following them in the same manner as the trial participants but allowing them to select their setting of care. The objective was to investigate the role of preference and location of care on care outcomes, including satisfaction with care, healing, health-related quality of life (HRQL), pain, and resource use. This is a secondary analysis of a prospective cohort of 126 individuals enrolled in an RCT to receive care at home or in a nurse-clinic (Allocated group), and an additional 104 who received care at home or in a nurse-clinic based on their preference (Choice group). Mobile individuals with a leg ulcer of venous or mixed venous etiology, referred for community leg ulcer care, were eligible. Specially-trained nurses provided care to both groups using an evidence-informed protocol. Baseline data included socio-demographic, circumstance-of-living and a detailed wound assessment. Mean age of the cohort was 68 years. Satisfaction, healing, recurrence, pain, HRQL, and resource utilization did not differ between groups. If available, individuals should have an option of care venue given almost half of those approached indicated a clear preference for clinic or home. With outcomes being similar, health care planners and decision-makers, as well as individuals and their families, can feel confident that the setting of care will not impact the outcomes. However, larger studies in other contexts are needed to explore the interaction between choice and setting. Full article
(This article belongs to the Special Issue Wound Care) Printed Edition available
Open AccessReview Strategizing Carbon-Neutral Mines: A Case for Pilot Projects
Minerals 2014, 4(2), 399-436; doi:10.3390/min4020399
Received: 4 March 2014 / Revised: 22 April 2014 / Accepted: 24 April 2014 / Published: 2 May 2014
Cited by 8 | Viewed by 3044 | PDF Full-text (5614 KB) | HTML Full-text | XML Full-text
Abstract
Ultramafic and mafic mine tailings are a valuable feedstock for carbon mineralization that should be used to offset carbon emissions generated by the mining industry. Although passive carbonation is occurring at the abandoned Clinton Creek asbestos mine, and the active Diavik diamond and
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Ultramafic and mafic mine tailings are a valuable feedstock for carbon mineralization that should be used to offset carbon emissions generated by the mining industry. Although passive carbonation is occurring at the abandoned Clinton Creek asbestos mine, and the active Diavik diamond and Mount Keith nickel mines, there remains untapped potential for sequestering CO2 within these mine wastes. There is the potential to accelerate carbonation to create economically viable, large-scale CO2 fixation technologies that can operate at near-surface temperature and atmospheric pressure. We review several relevant acceleration strategies including: bioleaching of magnesium silicates; increasing the supply of CO2 via heterotrophic oxidation of waste organics; and biologically induced carbonate precipitation, as well as enhancing passive carbonation through tailings management practices and use of CO2 point sources. Scenarios for pilot scale projects are proposed with the aim of moving towards carbon-neutral mines. A financial incentive is necessary to encourage the development of these strategies. We recommend the use of a dynamic real options pricing approach, instead of traditional discounted cash-flow approaches, because it reflects the inherent value in managerial flexibility to adapt and capitalize on favorable future opportunities in the highly volatile carbon market. Full article
(This article belongs to the Special Issue CO2 Sequestration by Mineral Carbonation: Challenges and Advances)
Open AccessReview Ascorbic Acid and the Brain: Rationale for the Use against Cognitive Decline
Nutrients 2014, 6(4), 1752-1781; doi:10.3390/nu6041752
Received: 25 October 2013 / Revised: 24 March 2014 / Accepted: 10 April 2014 / Published: 24 April 2014
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Abstract
This review is focused upon the role of ascorbic acid (AA, vitamin C) in the promotion of healthy brain aging. Particular attention is attributed to the biochemistry and neuronal metabolism interface, transport across tissues, animal models that are useful for this area of
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This review is focused upon the role of ascorbic acid (AA, vitamin C) in the promotion of healthy brain aging. Particular attention is attributed to the biochemistry and neuronal metabolism interface, transport across tissues, animal models that are useful for this area of research, and the human studies that implicate AA in the continuum between normal cognitive aging and age-related cognitive decline up to Alzheimer’s disease. Vascular risk factors and comorbidity relationships with cognitive decline and AA are discussed to facilitate strategies for advancing AA research in the area of brain health and neurodegeneration. Full article
(This article belongs to the Special Issue Vitamin C and Human Health) Printed Edition available
Open AccessArticle Consideration of Wind Speed Variability in Creating a Regional Aggregate Wind Power Time Series
Resources 2014, 3(1), 215-234; doi:10.3390/resources3010215
Received: 29 November 2013 / Revised: 29 January 2014 / Accepted: 18 February 2014 / Published: 27 February 2014
Cited by 5 | Viewed by 1623 | PDF Full-text (3327 KB) | HTML Full-text | XML Full-text
Abstract
For the purposes of understanding the impacts on the electricity network, estimates of hourly aggregate wind power generation for a region are required. However, the availability of wind production data for the UK is limited, and studies often rely on measured wind speeds
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For the purposes of understanding the impacts on the electricity network, estimates of hourly aggregate wind power generation for a region are required. However, the availability of wind production data for the UK is limited, and studies often rely on measured wind speeds from a network of meteorological (met) stations. Another option is to use historical wind speeds from a reanalysis dataset, with a resolution of around 40–50 km. Mesoscale models offer a potentially more desirable solution, with a homogeneous set of wind speeds covering a wide area at resolutions of 1–50 km, but they are computationally expensive to run at high resolution. An understanding of the most appropriate choice of data requires knowledge of the variability in time and space and how well that is represented by the choice of model. Here it is demonstrated that in regions offshore, or in relatively smooth terrain where variability in wind speeds is smaller, lower resolution models or single point records may suffice to represent aggregate power generation in a sub-region. The need for high resolution modelling in areas of complex terrain where spatial and temporal variability is higher is emphasised, particularly when the distribution of wind generation capacity is uneven over the region. Full article
(This article belongs to the Special Issue Spatial and Temporal Variation of the Wind Resource)
Open AccessReview Dendritic Cell-Induced Th1 and Th17 Cell Differentiation for Cancer Therapy
Vaccines 2013, 1(4), 527-549; doi:10.3390/vaccines1040527
Received: 7 August 2013 / Revised: 18 October 2013 / Accepted: 7 November 2013 / Published: 21 November 2013
Cited by 6 | Viewed by 2575 | PDF Full-text (695 KB) | HTML Full-text | XML Full-text
Abstract
The success of cellular immunotherapies against cancer requires the generation of activated CD4+ and CD8+ T-cells. The type of T-cell response generated (e.g., Th1 or Th2) will determine the efficacy of the therapy, and it is generally assumed that a type-1
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The success of cellular immunotherapies against cancer requires the generation of activated CD4+ and CD8+ T-cells. The type of T-cell response generated (e.g., Th1 or Th2) will determine the efficacy of the therapy, and it is generally assumed that a type-1 response is needed for optimal cancer treatment. IL-17 producing T-cells (Th17/Tc17) play an important role in autoimmune diseases, but their function in cancer is more controversial. While some studies have shown a pro-cancerous role for IL-17, other studies have shown an anti-tumor function. The induction of polarized T-cell responses can be regulated by dendritic cells (DCs). DCs are key regulators of the immune system with the ability to affect both innate and adaptive immune responses. These properties have led many researchers to study the use of ex vivo manipulated DCs for the treatment of various diseases, such as cancer and autoimmune diseases. While Th1/Tc1 cells are traditionally used for their potent anti-tumor responses, mounting evidence suggests Th17/Tc17 cells should be utilized by themselves or for the induction of optimal Th1 responses. It is therefore important to understand the factors involved in the induction of both type-1 and type-17 T-cell responses by DCs. Full article
(This article belongs to the Special Issue Dendritic Cell Vaccine)
Open AccessArticle Evaluation of Land Surface Models in Reproducing Satellite-Derived LAI over the High-Latitude Northern Hemisphere. Part I: Uncoupled DGVMs
Remote Sens. 2013, 5(10), 4819-4838; doi:10.3390/rs5104819
Received: 15 August 2013 / Revised: 9 September 2013 / Accepted: 17 September 2013 / Published: 8 October 2013
Cited by 18 | Viewed by 3218 | PDF Full-text (2133 KB) | HTML Full-text | XML Full-text
Abstract
Leaf Area Index (LAI) represents the total surface area of leaves above a unit area of ground and is a key variable in any vegetation model, as well as in climate models. New high resolution LAI satellite data is now available covering a
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Leaf Area Index (LAI) represents the total surface area of leaves above a unit area of ground and is a key variable in any vegetation model, as well as in climate models. New high resolution LAI satellite data is now available covering a period of several decades. This provides a unique opportunity to validate LAI estimates from multiple vegetation models. The objective of this paper is to compare new, satellite-derived LAI measurements with modeled output for the Northern Hemisphere. We compare monthly LAI output from eight land surface models from the TRENDY compendium with satellite data from an Artificial Neural Network (ANN) from the latest version (third generation) of GIMMS AVHRR NDVI data over the period 1986–2005. Our results show that all the models overestimate the mean LAI, particularly over the boreal forest. We also find that seven out of the eight models overestimate the length of the active vegetation-growing season, mostly due to a late dormancy as a result of a late summer phenology. Finally, we find that the models report a much larger positive trend in LAI over this period than the satellite observations suggest, which translates into a higher trend in the growing season length. These results highlight the need to incorporate a larger number of more accurate plant functional types in all models and, in particular, to improve the phenology of deciduous trees. Full article
(This article belongs to the Special Issue Monitoring Global Vegetation with AVHRR NDVI3g Data (1981-2011))
Open AccessArticle Evaluation of Land Surface Models in Reproducing Satellite Derived Leaf Area Index over the High-Latitude Northern Hemisphere. Part II: Earth System Models
Remote Sens. 2013, 5(8), 3637-3661; doi:10.3390/rs5083637
Received: 4 June 2013 / Revised: 17 July 2013 / Accepted: 17 July 2013 / Published: 25 July 2013
Cited by 19 | Viewed by 3116 | PDF Full-text (4209 KB) | HTML Full-text | XML Full-text
Abstract
Leaf Area Index (LAI) is a key parameter in the Earth System Models (ESMs) since it strongly affects land-surface boundary conditions and the exchange of matter and energy with the atmosphere. Observations and data products derived from satellite remote sensing are important for
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Leaf Area Index (LAI) is a key parameter in the Earth System Models (ESMs) since it strongly affects land-surface boundary conditions and the exchange of matter and energy with the atmosphere. Observations and data products derived from satellite remote sensing are important for the validation and evaluation of ESMs from regional to global scales. Several decades’ worth of satellite data products are now available at global scale which represents a unique opportunity to contrast observations against model results. The objective of this study is to assess whether ESMs correctly reproduce the spatial variability of LAI when compared with satellite data and to compare the length of the growing season in the different models with the satellite data. To achieve this goal we analyse outputs from 11 coupled carbon-climate models that are based on the set of new global model simulations planned in support of the IPCC Fifth Assessment Report. We focus on the average LAI and the length of the growing season on Northern Hemisphere over the period 1986–2005. Additionally we compare the results with previous analyses (Part I) of uncoupled land surface models (LSMs) to assess the relative contribution of vegetation and climatic drivers on the correct representation of LAI. Our results show that models tend to overestimate the average values of LAI and have a longer growing season due to the later dormancy. The similarities with the uncoupled models suggest that representing the correct vegetation fraction with the associated parameterizations; is more important in controlling the distribution and value of LAI than the climatic variables. Full article
(This article belongs to the Special Issue Monitoring Global Vegetation with AVHRR NDVI3g Data (1981-2011))
Figures

Open AccessShort Note A One-Dimensional Coordination Polymer Constructed from Cadmium(II) Cations and Sparfloxacinate Anions
Crystals 2012, 2(4), 1366-1373; doi:10.3390/cryst2041366
Received: 28 June 2012 / Revised: 22 August 2012 / Accepted: 1 September 2012 / Published: 28 September 2012
Cited by 3 | Viewed by 1665 | PDF Full-text (379 KB) | HTML Full-text | XML Full-text
Abstract
The synthesis and crystal structure of the one-dimensional coordination polymer, [Cd(spar)2]n·n(H2O), are described, where spar is the sparfloxacinate anion, C19H21N4O3F2. The Cd2+
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The synthesis and crystal structure of the one-dimensional coordination polymer, [Cd(spar)2]n·n(H2O), are described, where spar is the sparfloxacinate anion, C19H21N4O3F2. The Cd2+ ion is bonded to four spar ligands: Two O,O-chelate with their β-keto carboxylate groupings and two are monodentate-bound through a carboxylate O atom, to result in a distorted CdO6 octahedral coordination geometry. The bridging ligands lead to [100] polymeric chains in the crystal and N–H···O hydrogen bonds and possible weak aromatic p–p stacking interactions help to consolidate the structure. Crystal data: C38H44CdF4N8O7, Mr = 913.21, triclinic, (No. 2), Z = 2, a = 9.2256(4) Å, b = 12.8767(5) Å, c = 17.4297(7) Å, α = 89.505(2)°, β = 85.062(2)°, g = 70.757(2)°, V = 1947.20(14) Å3, R(F) = 0.036, wR(F2) = 0.082. Full article
Open AccessShort Note [Pr2(pdc)3(Hpdc)(H2O)4]n·n(H3hp)·8n(H2O), a One-Dimensional Coordination Polymer Containing PrO6N3 Tri-Capped Trigonal Prisms and PrO8N Mono-Capped Square Anti-Prisms (H2pdc = Pyridine 2,6-Dicarboxylic Acid, C7H5NO4; 3hp = 3-Hydroxy Pyridine, C5H5NO)
Crystals 2012, 2(3), 1253-1260; doi:10.3390/cryst2031253
Received: 15 May 2012 / Revised: 8 June 2012 / Accepted: 6 July 2012 / Published: 27 August 2012
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Abstract
The synthesis, structure and some properties of the one-dimensional coordination polymer, [Pr2(pdc)3(Hpdc)]n·n(H3hp)·8n(H2O), (H2pdc = pyridine 2,6-dicarboxylic acid, C7H5NO4; 3hp = 3-hydroxypyridine, C5
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The synthesis, structure and some properties of the one-dimensional coordination polymer, [Pr2(pdc)3(Hpdc)]n·n(H3hp)·8n(H2O), (H2pdc = pyridine 2,6-dicarboxylic acid, C7H5NO4; 3hp = 3-hydroxypyridine, C5H5NO) are described. One of the Pr3+ ions is coordinated by two O,N,O-tridentate pdc2− ligands and one tridentate Hpdc anion to generate a fairly regular PrO6N3 tri-capped trigonal prism, with the N atoms acting as the caps. The second Pr3+ ion is coordinated by one tridentate pdc2− dianion, four water molecules and two monodentate bridging pdc2− ligands to result in a PrO8N coordination polyhedron that approximates to a mono-capped square-anti-prism. The ligands bridge the metal-atom nodes into a chain, which extends in the [100] direction. The H3hp+ cation and uncoordinated water molecules occupy the inter-chain regions and an N–HLO and numerous O–HLO hydrogen bonds consolidate the structure. The H3hp+ species appears to intercalate between pendant pdc rings to consolidate the polymeric structure. Crystal data: 1 (C33H43N5O29Pr2), Mr = 1255.54, triclinic, (No. 2), Z = 2, a = 13.2567(1) Å, b = 13.6304(2) Å, c = 13.6409(2) Å, α = 89.695(1)°, β = 63.049(1)°, γ = 86.105(1)°, V = 2191.16(5) Å3, R(F) = 0.033, wR(F2) = 0.084. Full article
Open AccessShort Note [KDy(Hptc)3(H3ptc)]n·2n(Hbipy)·5n(H2O), a Layered Coordination Polymer Containing DyO6N3 Tri-Capped Trigonal Prisms (H3ptc = Pyridine 2,4,6-Tricarboxylic Acid, C8H5NO6; Bipy = 2,2'-Bipyridine, C10H8N2)
Crystals 2012, 2(3), 1084-1091; doi:10.3390/cryst2031084
Received: 10 May 2012 / Revised: 7 June 2012 / Accepted: 25 June 2012 / Published: 3 August 2012
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Abstract
The synthesis, structure and properties of the bimetallic layered coordination polymer, [KDy(C8H3NO6)3(C8H5NO6)]n·2n(C10H9N2)·5n(H2O) = [KDy(Hptc)3
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The synthesis, structure and properties of the bimetallic layered coordination polymer, [KDy(C8H3NO6)3(C8H5NO6)]n·2n(C10H9N2)·5n(H2O) = [KDy(Hptc)3(H3ptc)]n·2n(Hbipy)·5n(H2O), are described. The Dy3+ ion is coordinated by three O,N,O-tridentate doubly-deprotonated pyridine tri-carboxylate (Hptc) ligands to generate a fairly regular DyO6N3 tri-capped trigonal prism, with the N atoms acting as the caps. The potassium ion is coordinated by an O,N,O-tridentate H3ptc molecule as well as monodentate and bidentate Hptc ligands to result in an irregular KNO9 coordination geometry. The ligands bridge the metal-atom nodes into a bimetallic, layered, coordination polymer, which extends as corrugated layers in the (010) plane, with the mono-protonated bipyridine cations and water molecules occupying the inter-layer regions: Unlike related structures, there are no dysprosium–water bonds. Many O–HLO and N–HLO hydrogen bonds consolidate the structure. Characterization and bioactivity data are described. Crystal data: C52H42DyKN8O29, Mr = 1444.54, triclinic, (No. 2), Z = 2, a = 9.188(2) Å, b = 15.7332(17) Å, c = 19.1664(19) Å, α = 92.797(6)°, β = 92.319(7)°, γ = 91.273(9)°, V = 2764.3(7) Å3, R(F) = 0.029, wR(F2) = 0.084. Full article
Open AccessArticle Structures of Benzenesulfonylamino-3-(4-benzenesulfonyloxy-phenyl)-propionic acid and 2-(toluene-4-sulfonylamino)-3-[4-(toluene-4-sulponyl-oxy)-phenyl]-propionic acid: Variations in L-tyrosine Backbone Conformation, Intramolecular Aromatic π–π Stacking and Short C–H···O Interactions
Crystals 2011, 1(2), 69-77; doi:10.3390/cryst1020069
Received: 26 April 2011 / Revised: 8 June 2011 / Accepted: 10 June 2011 / Published: 14 June 2011
Cited by 2 | Viewed by 2947 | PDF Full-text (321 KB) | HTML Full-text | XML Full-text
Abstract
The syntheses and crystal structures of benzenesulfonylamino-3-(4-benzenesulfonyloxy-phenyl)-propionic acid (1) and 2-(toluene-4-sulfonylamino)-3-[4-(toluene-4-sulponyloxy)-phenyl]-propionic acid (2) are described. The L-tyrosine cores of the molecules show significant conformational differences. In 1, both organic molecules show intramolecular aromatic π–π stacking and in 2
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The syntheses and crystal structures of benzenesulfonylamino-3-(4-benzenesulfonyloxy-phenyl)-propionic acid (1) and 2-(toluene-4-sulfonylamino)-3-[4-(toluene-4-sulponyloxy)-phenyl]-propionic acid (2) are described. The L-tyrosine cores of the molecules show significant conformational differences. In 1, both organic molecules show intramolecular aromatic π–π stacking and in 2 a very short intermolecular Cα–H···O interaction is seen. The structures of 1 and 2 are compared with those of related materials. Crystal data: 12·H2O·MeOH [2(C21H19NO7S2)·H2O·CH4O], Mr = 973.04, monoclinic, P21 (No. 4), a = 8.0078 (4) Å, b = 34.0704 (16) Å, c = 8.5506 (3) Å, β = 94.239 (3)°, V = 2326.47 (18) Å3, Z = 2, T = 296 K, R(F) = 0.062, wR(F2) = 0.157, 2·H2O (C23H25NO7S2·H2O), Mr = 507.56, monoclinic, P21 (No. 4), a = 5.7171 (7) Å, b = 24.359 (3) Å, c = 9.1043 (10) Å, β = 104.563 (6)°, V = 1227.2 (2) Å3, Z = 2, T = 296 K, R(F) = 0.055, wR(F2) = 0.092. Full article
(This article belongs to the Special Issue Feature Paper)
Open AccessReview Overview of Histone Deacetylase Inhibitors in Haematological Malignancies
Pharmaceuticals 2010, 3(8), 2674-2688; doi:10.3390/ph3082674
Received: 23 July 2010 / Revised: 12 August 2010 / Accepted: 13 August 2010 / Published: 17 August 2010
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Abstract
Histone deacetylase inhibitors (HDACi) can induce hyperacetylation of both histone and non-histone target resulting in epigenetic reprogramming and altered activity, stability and localisation of non-histone proteins to ultimately mediate diverse biological effects on cancer cells and their microenvironment. Clinical trials have demonstrated single
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Histone deacetylase inhibitors (HDACi) can induce hyperacetylation of both histone and non-histone target resulting in epigenetic reprogramming and altered activity, stability and localisation of non-histone proteins to ultimately mediate diverse biological effects on cancer cells and their microenvironment. Clinical trials have demonstrated single agent HDACi to have activity in hematological malignancies, in particular T-cell lymphoma and Hodgkin lymphoma. Combination strategies with standard therapies based on pre-clinical data are being employed with significant success due to their excellent side effect profile. Correlative studies will provide valuable information on the sub-groups of patients more likely to respond or be resistant to HDACi therapy, while long-term monitoring for toxicities is also needed. Full article
(This article belongs to the Special Issue HDAC Inhibitors)
Open AccessArticle Muscle Contraction and Force: the Importance of an Ancillary Network, Nutrient Supply and Waste Removal
Int. J. Mol. Sci. 2008, 9(8), 1472-1488; doi:10.3390/ijms9081472
Received: 30 May 2008 / Revised: 11 July 2008 / Accepted: 4 August 2008 / Published: 20 August 2008
Cited by 3 | Viewed by 5147 | PDF Full-text (291 KB) | HTML Full-text | XML Full-text
Abstract
Muscle contraction studies often focus solely on myofibres and the proteins known to be involved in the processes of sarcomere shortening and cross-bridge cycling, but skeletal muscle also comprises a very elaborate ancillary network of capillaries, which not only play a vital role
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Muscle contraction studies often focus solely on myofibres and the proteins known to be involved in the processes of sarcomere shortening and cross-bridge cycling, but skeletal muscle also comprises a very elaborate ancillary network of capillaries, which not only play a vital role in terms of nutrient delivery and waste product removal, but are also tethered to surrounding fibres by collagen ”wires”. This paper therefore addresses aspects of the ancillary network of skeletal muscle at both a microscopic and functional level in order to better understand its role holistically as a considerable contributor to force transfer within muscular tissue. Full article

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