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Open AccessArticle A Piecewise Bound Constrained Optimization for Harmonic Responsibilities Assessment under Utility Harmonic Impedance Changes
Energies 2017, 10(7), 936; doi:10.3390/en10070936
Received: 22 April 2017 / Revised: 25 June 2017 / Accepted: 1 July 2017 / Published: 6 July 2017
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Abstract
Considering the effect of the utility harmonic impedance variations on harmonic responsibility, a method based on piecewise bound constrained optimization is proposed in this paper to evaluate the load harmonic responsibilities. The wavelet packet transform is employed to determine the change times of
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Considering the effect of the utility harmonic impedance variations on harmonic responsibility, a method based on piecewise bound constrained optimization is proposed in this paper to evaluate the load harmonic responsibilities. The wavelet packet transform is employed to determine the change times of the utility harmonic impedances. The harmonic monitoring data is divided into several segments where the utility harmonic impedances are considered as constants. Then, the problem of harmonic responsibility assessment under utility harmonic impedance changes are settled by the piecewise bound constrained optimization model. Furthermore, the interior point, the sequential quadratic programming and the active set algorithm are respectively adopted to calculate all the instantaneous harmonic responsibilities of harmonic loads. Finally, the weighted summation is used to calculate the total harmonic responsibility. To demonstrate the validity, simulation tests are carried out on an experimental circuit and the IEEE 13-bus distribution system. Full article
(This article belongs to the Special Issue Distribution Power Systems and Power Quality)
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Open AccessArticle Knowledge, Attitude, and Practice (KAP) of Dairy Products in Chinese Urban Population and the Effects on Dairy Intake Quality
Nutrients 2017, 9(7), 668; doi:10.3390/nu9070668
Received: 25 May 2017 / Revised: 22 June 2017 / Accepted: 24 June 2017 / Published: 27 June 2017
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Abstract
Insufficient intake of dairy products is a nutritional problem of concern in China. However, the knowledge, attitude, and practice of consuming dairy products in the Chinese population remain unknown. A total of 1739 subjects from eight cities in China participated in this study.
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Insufficient intake of dairy products is a nutritional problem of concern in China. However, the knowledge, attitude, and practice of consuming dairy products in the Chinese population remain unknown. A total of 1739 subjects from eight cities in China participated in this study. A questionnaire was used to measure knowledge of and attitude toward dairy. A semi-food intake frequency questionnaire was used to obtain the frequencies and amount of different kinds of dairy product intake. Calcium and protein intake were investigated within one 24-hour period of dietary recall. The results showed that questions related to lactose intolerance had the highest unknown rate and the lowest accuracy. Males, subjects with a lower education level, lower monthly family income (<3000 yuan), lower monthly family food expenditure (<1000 yuan), and lower personal monthly expenditure on dairy products (<10 yuan) had a significantly lower knowledge score. For attitude, 42.7 percent of subjects had self-perceived insufficient intake of dairy. While 15.2 percent of subjects reported experiencing lactose intolerance symptoms, 29.5 percent did not know the reasons. In practice, the median (25th, 75th) intake of dairy products was 71.4 (0.0, 200.0) g/day. A significantly lower intake of dairy and low-fat or fat-free dairy products was shown in subjects with poor dairy knowledge. For the perception of lactose intolerance, the lowest intake was shown in the “unsure” group. In conclusion, knowledge gaps and self-perception bias regarding dairy products exist in Chinese urban adults and these are associated with the quantity and quality of dairy intake. Full article
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Open AccessArticle iTRAQ Mitoproteome Analysis Reveals Mechanisms of Programmed Cell Death in Arabidopsis thaliana Induced by Ochratoxin A
Toxins 2017, 9(5), 167; doi:10.3390/toxins9050167
Received: 5 April 2017 / Revised: 9 May 2017 / Accepted: 15 May 2017 / Published: 18 May 2017
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Abstract
Ochratoxin A (OTA) is one of the most common and dangerous mycotoxins in the world. Previous work indicated that OTA could elicit spontaneous HR-like lesions formation Arabidopsis thaliana, reactive oxygen species (ROS) play an important role in OTA toxicity, and their major
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Ochratoxin A (OTA) is one of the most common and dangerous mycotoxins in the world. Previous work indicated that OTA could elicit spontaneous HR-like lesions formation Arabidopsis thaliana, reactive oxygen species (ROS) play an important role in OTA toxicity, and their major endogenous source is mitochondria. However, there has been no evidence as to whether OTA induces directly PCD in plants until now. In this study, the presence of OTA in Arabidopsis thaliana leaves triggered accelerated respiration, increased production of mitochondrial ROS, the opening of ROS-dependent mitochondrial permeability transition pores and a decrease in mitochondrial membrane potential as well as the release of cytochrome c into the cytosol. There were 42 and 43 significantly differentially expressed proteins identified in response to exposure to OTA for 8 and 24 h, respectively, according to iTRAQ analysis. These proteins were mainly involved in perturbation of the mitochondrial electron transport chain, interfering with ATP synthesis and inducing PCD. Digital gene expression data at transcriptional level was consistent with the cell death induced by OTA being PCD. These results indicated that mitochondrial dysfunction was a prerequisite for OTA-induced PCD and the initiation and execution of PCD via a mitochondrial-mediated pathway. Full article
(This article belongs to the collection Ochratoxins-Collection)
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Open AccessArticle A Hybrid Generalized Hidden Markov Model-Based Condition Monitoring Approach for Rolling Bearings
Sensors 2017, 17(5), 1143; doi:10.3390/s17051143
Received: 13 April 2017 / Revised: 7 May 2017 / Accepted: 10 May 2017 / Published: 18 May 2017
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Abstract
The operating condition of rolling bearings affects productivity and quality in the rotating machine process. Developing an effective rolling bearing condition monitoring approach is critical to accurately identify the operating condition. In this paper, a hybrid generalized hidden Markov model-based condition monitoring approach
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The operating condition of rolling bearings affects productivity and quality in the rotating machine process. Developing an effective rolling bearing condition monitoring approach is critical to accurately identify the operating condition. In this paper, a hybrid generalized hidden Markov model-based condition monitoring approach for rolling bearings is proposed, where interval valued features are used to efficiently recognize and classify machine states in the machine process. In the proposed method, vibration signals are decomposed into multiple modes with variational mode decomposition (VMD). Parameters of the VMD, in the form of generalized intervals, provide a concise representation for aleatory and epistemic uncertainty and improve the robustness of identification. The multi-scale permutation entropy method is applied to extract state features from the decomposed signals in different operating conditions. Traditional principal component analysis is adopted to reduce feature size and computational cost. With the extracted features’ information, the generalized hidden Markov model, based on generalized interval probability, is used to recognize and classify the fault types and fault severity levels. Finally, the experiment results show that the proposed method is effective at recognizing and classifying the fault types and fault severity levels of rolling bearings. This monitoring method is also efficient enough to quantify the two uncertainty components. Full article
(This article belongs to the Section Physical Sensors)
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Open AccessArticle Using UPLC-MS/MS for Characterization of Active Components in Extracts of Yupingfeng and Application to a Comparative Pharmacokinetic Study in Rat Plasma after Oral Administration
Molecules 2017, 22(5), 810; doi:10.3390/molecules22050810
Received: 13 April 2017 / Revised: 10 May 2017 / Accepted: 11 May 2017 / Published: 17 May 2017
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Abstract
Yupingfeng (YPF), a famous traditional Chinese medicine, which contains a large array of compounds, has been effectually used in health protection. A two-dimensional liquid chromatography (2D-LC) combined with quadrupole time-of-flight mass spectrometry (QTOF-MS) method was firstly established to separate and identify
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Yupingfeng (YPF), a famous traditional Chinese medicine, which contains a large array of compounds, has been effectually used in health protection. A two-dimensional liquid chromatography (2D-LC) combined with quadrupole time-of-flight mass spectrometry (QTOF-MS) method was firstly established to separate and identify chemical components in YPF. A total of 33 compounds were identified, including 15 constituents (flavonoids and saponins) in Astragali radix; seven constituents (sesquiterpenoids and polysaccharide) in Atractylodis rhizoma; and 11 constituents (chromone and coumarins) in Saposhnikoviae radix. The corresponding fragmentation pathway of typical substances was investigated. Then, seven active constituents (astragaloside, calycosin, formononetin, cimicifugoside, 4-O-beta-d-glucosyl-5-O-methylvisamminol, sec-O-glucosylhamaudol, and atractylenolide II) derived from three medicinal plants were chosen to further investigate the pharmacokinetic behavior of YPF formula using ultrahigh-performance liquid chromatography with triple quadrupole mass spectrometry system. The method was sensitive, accurate and reliable. We also used the area under the plasma concentration–time curve from zero to infinity (AUC0−∞) as weighting factor to make an integrated pharmacokinetic curve. Results show that the constituents of Saposhnikoviae radix have the best absorption and pharmacokinetic behavior and may play important role in leading to the changes of overall therapeutic effects of YPF. Further study is needed to confirm the association between them. Full article
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Open AccessArticle Highly Dispersed PdNPs/α-Al2O3 Catalyst for the Selective Hydrogenation of Acetylene Prepared with Monodispersed Pd Nanoparticles
Catalysts 2017, 7(5), 128; doi:10.3390/catal7050128
Received: 28 March 2017 / Revised: 24 April 2017 / Accepted: 25 April 2017 / Published: 28 April 2017
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Abstract
Pd nanoparticles (PdNPs) stabilized by methyl cellulose (MC) were synthesized in an aqueous solution, which are monodispersed nanoparticles. PdNPs/α-Al2O3 catalyst was prepared with monodispersed PdNPs and showed better catalytic performance than Pd/α-Al2O3 catalyst prepared by the incipient
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Pd nanoparticles (PdNPs) stabilized by methyl cellulose (MC) were synthesized in an aqueous solution, which are monodispersed nanoparticles. PdNPs/α-Al2O3 catalyst was prepared with monodispersed PdNPs and showed better catalytic performance than Pd/α-Al2O3 catalyst prepared by the incipient wetness impregnation method using Pd(NO3)2 as a precursor. The catalysts were characterized by transmission electron microscopy (TEM), scanning electron microscopy (SEM), energy dispersive X-ray spectroscopy (EDS), X-ray photoelectron spectroscopy (XPS), X-ray powder diffraction (XRD) and inductively coupled plasma mass spectrometry (ICP-MS). It was found that monodispersed PdNPs were spherical or elliptical nanoparticles with exposed (111) and (100) facets, and the PdNPs/α-Al2O3 catalyst showed a more concentrated distribution of Pd particles on the surface of α-Al2O3 support than the Pd/α-Al2O3 catalyst. The preparation method achieved the highly dispersed PdNPs/α-Al2O3 catalyst with smaller Pd particle size and decreased the aggregation of Pd active sites, which was responsible for higher acetylene conversion and ethylene selectivity. Full article
(This article belongs to the Special Issue Nanostructured Materials for Applications in Heterogeneous Catalysis)
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Open AccessArticle Two Organic Cation Salts Containing Tetra(isothiocyanate)cobaltate(II): Synthesis, Crystal Structures, Spectroscopic, Optical and Magnetic Properties
Crystals 2017, 7(3), 92; doi:10.3390/cryst7030092
Received: 13 January 2017 / Revised: 17 March 2017 / Accepted: 17 March 2017 / Published: 22 March 2017
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Abstract
Single crystals of two hybrid organic-inorganic molecular solids, benzyl pyridinium tetra(isothiocyanate)cobalt ([BzPy]2[Co(NCS)4]) (1) and benzyl quinolinium tetra(isothiocyanate)cobalt ([BzQl]2[Co(NCS)4]) (2), were grown using a slow evaporation growth technique at room temperature and
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Single crystals of two hybrid organic-inorganic molecular solids, benzyl pyridinium tetra(isothiocyanate)cobalt ([BzPy]2[Co(NCS)4]) (1) and benzyl quinolinium tetra(isothiocyanate)cobalt ([BzQl]2[Co(NCS)4]) (2), were grown using a slow evaporation growth technique at room temperature and their IR, UV-Vis, X-ray crystal structures, luminescence, and magnetism were reported. The crystal structural analysis revealed that two molecular solids crystallize in the monoclinic space group P21/c of 1 and P21/n of 2. The cations form a dimer through weak C–H···π/π···π interactions in 1 and 2, and the adjacent cation (containing N(6) atom) in 2 forms a columnar structure through π···π weak interactions between the quinoline and benzene rings, while the anions in 1 form a layer structure via short S···Co interactions. The anions (A) and cations (C) are arranged alternatively into a column in the sequence of ···A–CC–A–CC–A··· for 1, while the two anions and cationic dimer in 2 form an alliance by the C–H···π, C–H···S and C–H···N hydrogen bonds. A weak S···π interaction was found in 1 and 2. The two molecular solids show a broad fluorescence emission around 400 nm in the solid state at room temperature, and weak antiferromagnetic coupling behavior when the temperature is lowered. Full article
(This article belongs to the Section Interactions in Crystal Structures)
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Open AccessArticle Prevalence of Malocclusion in 3- to 5-Year-Old Children in Shanghai, China
Int. J. Environ. Res. Public Health 2017, 14(3), 328; doi:10.3390/ijerph14030328
Received: 18 January 2017 / Revised: 13 March 2017 / Accepted: 16 March 2017 / Published: 22 March 2017
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Abstract
The aim of the present study was to obtain the prevalence of malocclusions in preschool children in Shanghai, China. A cross-sectional survey was conducted among 2335 children aged 3–5 years from kindergartens. Several occlusal parameters were clinically assessed, including second deciduous molar terminal
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The aim of the present study was to obtain the prevalence of malocclusions in preschool children in Shanghai, China. A cross-sectional survey was conducted among 2335 children aged 3–5 years from kindergartens. Several occlusal parameters were clinically assessed, including second deciduous molar terminal plane, canine relationship, degree of overjet and overbite, anterior and posterior crossbite, and the presence or absence of physiologic spaces and crowding. All parents of subjects were asked to fill in the oral health knowledge questionnaires. The prevalence of malocclusion in primary dentition in Shanghai was 83.9%, and no significant differences were found in genders. Data showed that the prevalence of deep overbite (63.7%) was the highest in children with malocclusion, followed by deep overjet (33.9%), midline deviation (26.6%), anterior crossbite (8.0%) and anterior crowding (6.5%). The results revealed a high prevalence of malocclusion in primary dentition in children aged 3–5 years old of Shanghai, especially in vertical anomalies. The need for preventive orthodontic therapy is extremely desired and oral health education about malocclusion should be strengthened. Full article
(This article belongs to the Special Issue Epidemiology and Determinants of Dental Caries in Children)
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Open AccessArticle Maternal Dietary Nutrient Intake and Its Association  with Preterm Birth: A Case‐control Study in Beijing,  China
Nutrients 2017, 9(3), 221; doi:10.3390/nu9030221
Received: 21 December 2016 / Accepted: 27 February 2017 / Published: 1 March 2017
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Abstract
This study aimed to evaluate dietary nutrient intake among Chinese pregnant women by comparison with Chinese Dietary Reference Intakes (DRIs) and to explore the association between dietary nutrients and preterm birth. A case‐control design was conducted in Beijing with 130 preterm delivery mothers
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This study aimed to evaluate dietary nutrient intake among Chinese pregnant women by comparison with Chinese Dietary Reference Intakes (DRIs) and to explore the association between dietary nutrients and preterm birth. A case‐control design was conducted in Beijing with 130 preterm delivery mothers in case group and 381 term delivery mothers in control group. Information on mothers’ diet was collected using a food frequency questionnaire, and nutrients and energy intakes were subsequently calculated based on DRIs. Multivariate analysis of variance was used to compare the differences between term and preterm groups in relation to dietary nutrients. Dietary nutrient intakes were imbalanced in both groups compared with Chinese DRIs. Preterm delivery mothers had a lower level of fat and vitamin E intake than term delivery mothers (p < 0.05). Multivariate analysis showed lower vitamin E intake in preterm delivery mothers with a prepregnancy BMI < 18.5 kg/m2 (p < 0.05) and higher carbohydrate intake in preterm delivery mothers with prepregnancy BMI ≥ 24 kg/m2 (p < 0.05). An imbalanced diet in both groups and low level of dietary intakes of fat and vitamin E in preterm group suggest health education measures should be taken to improve the dietary quality of pregnant women, especially for those with an abnormal prepregnancy BMI. Full article
Open AccessArticle The Structure-Activity Relationship of Pterostilbene Against Candida albicans Biofilms
Molecules 2017, 22(3), 360; doi:10.3390/molecules22030360
Received: 5 November 2016 / Revised: 12 February 2017 / Accepted: 22 February 2017 / Published: 27 February 2017
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Abstract
Candida albicans biofilms contribute to invasive infections and dramatic drug resistance, and anti-biofilm agents are urgently needed in the clinic. Pterostilbene (PTE) is a natural plant product with potentials to be developed as an anti-biofilm agent. In this study, we evaluated the structure-activity
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Candida albicans biofilms contribute to invasive infections and dramatic drug resistance, and anti-biofilm agents are urgently needed in the clinic. Pterostilbene (PTE) is a natural plant product with potentials to be developed as an anti-biofilm agent. In this study, we evaluated the structure-activity relationship (SAR) of PTE analogues against C. albicans biofilms. XTT (Sodium 2,3-bis(2-methoxy-4-nitro-5-sulfophenyl)-2H-tetrazolium-5-carboxanilide inner salt) reduction assay was used to evaluate the activity of the analogues against C. albicans biofilms. Knowing that hyphal formation is essential for C. albicans biofilms, anti-hyphal assay was further carried out. By comparing a series of compounds tested in this study, we found that compounds with para-hydroxy (–OH) in partition A exhibited better activity than those with other substituents in the para position, and the double bond in partition B and meta-dimethoxy (–OCH3) in partition C both contributed to the best activity. Consistent results were obtained by anti-hyphal assay. Collectively, para-hydroxy (–OH), double bond and meta-dimethoxy (–OCH3) are all needed for the best activity of PTE against C. albicans biofilms. Full article
(This article belongs to the Special Issue Structure-Activity Relationship of Natural Products)
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Open AccessArticle Sub-Acute Toxicity Study of Graphene Oxide in the Sprague-Dawley Rat
Int. J. Environ. Res. Public Health 2016, 13(11), 1149; doi:10.3390/ijerph13111149
Received: 1 July 2016 / Revised: 17 October 2016 / Accepted: 7 November 2016 / Published: 17 November 2016
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Abstract
Graphene oxide (GO) is an oxidized derivative of graphene used in biotechnology and medicine. The safety of GO is uncertain, so we evaluated its toxicity in male rats. Rat tail veins were injected with 2.5, 5, or 10 mg/kg GO for seven days
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Graphene oxide (GO) is an oxidized derivative of graphene used in biotechnology and medicine. The safety of GO is uncertain, so we evaluated its toxicity in male rats. Rat tail veins were injected with 2.5, 5, or 10 mg/kg GO for seven days and behavioral patterns, pathology, and tissue morphology were assessed. Data show that behaviors were not altered according to an open field test and a functional observational battery test, but histopathological analysis indicated that GO caused inflammation of the lung, liver, and spleen. GO also reduced cholesterol, high density lipoprotein (HDL), and low density lipoprotein (LDL). No other organs were modified. Thus, high concentrations of GO are toxic for the lung, liver, and spleen, but the mechanism by which this occurs requires more study. Full article
(This article belongs to the Special Issue Environmental Neurotoxicology)
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Open AccessArticle Study on Dicyandiamide-Imprinted Polymers with Computer-Aided Design
Int. J. Mol. Sci. 2016, 17(11), 1750; doi:10.3390/ijms17111750
Received: 31 August 2016 / Revised: 13 October 2016 / Accepted: 13 October 2016 / Published: 26 October 2016
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Abstract
With the aid of theoretical calculations, a series of molecularly imprinted polymers (MIPs) were designed and prepared for the recognition of dicyandiamide (DCD) via precipitation polymerization using acetonitrile as the solvent at 333 K. On the basis of the long-range correction method of
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With the aid of theoretical calculations, a series of molecularly imprinted polymers (MIPs) were designed and prepared for the recognition of dicyandiamide (DCD) via precipitation polymerization using acetonitrile as the solvent at 333 K. On the basis of the long-range correction method of M062X/6-31G(d,p), we simulated the bonding sites, bonding situations, binding energies, imprinted molar ratios, and the mechanisms of interaction between DCD and the functional monomers. Among acrylamide (AM), N,N’-methylenebisacrylamide (MBA), itaconic acid (IA), and methacrylic acid (MAA), MAA was confirmed as the best functional monomer, because the strongest interaction (the maximum number of hydrogen bonds and the lowest binding energy) occurs between DCD and MAA, when the optimal molar ratios for DCD to the functional monomers were used, respectively. Additionally, pentaerythritol triacrylate (PETA) was confirmed to be the best cross-linker among divinylbenzene (DVB), ethylene glycol dimethacrylate (EGDMA), trimethylolpropane trimethylacrylate (TRIM), and PETA. This is due to the facts that the weakest interaction (the highest binding energy) occurs between PETA and DCD, and the strongest interaction (the lowest binding energy) occurs between PETA and MAA. Depending on the results of theoretical calculations, a series of MIPs were prepared. Among them, the ones prepared using DCD, MAA, and PETA as the template, the functional monomer, and the cross-linker, respectively, exhibited the highest adsorption capacity for DCD. The apparent maximum absorption quantity of DCD on the MIP was 17.45 mg/g. Full article
(This article belongs to the Section Molecular Recognition)
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Open AccessArticle Characterization, Long-Range Transport and Source Identification of Carbonaceous Aerosols during Spring and Autumn Periods at a High Mountain Site in South China
Atmosphere 2016, 7(10), 122; doi:10.3390/atmos7100122
Received: 18 August 2016 / Revised: 19 September 2016 / Accepted: 21 September 2016 / Published: 26 September 2016
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Abstract
PM10 (particulate matter) samples were collected at Mount Lu, a high elevation mountain site in south China (August and September of 2011; and March, April and May of 2012). Eight carbonaceous fractions of particles were analyzed to characterize the possible carbonaceous emission
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PM10 (particulate matter) samples were collected at Mount Lu, a high elevation mountain site in south China (August and September of 2011; and March, April and May of 2012). Eight carbonaceous fractions of particles were analyzed to characterize the possible carbonaceous emission sources. During the sampling events, daily average concentrations of PM10 at Mount Lu were 97.87 μg/m3 and 73.40 μg/m3 in spring and autumn, respectively. The observed mean organic carbon (OC) and element carbon (EC) concentrations during spring in PM10 were 10.58 μg/m3 and 2.58 μg/m3, respectively, and those in autumn were 6.89 μg/m3 and 2.40 μg/m3, respectively. Secondary organic carbon concentration was 4.77 μg/m3 and 2.93 μg/m3 on average, accounting for 28.0% and 31.0% of the total OC in spring and autumn, respectively. Relationships between carbonaceous species and results of principal component analysis showed that there were multiple sources contributing to the carbonaceous aerosols at the observation site. Through back trajectory analysis, it was found that air masses in autumn were mainly transported from the south of China, and these have the highest OC but lowest EC concentrations. Air masses in spring transported from northwest China bring 7.77 μg/m3 OC and 2.28 μg/m3 EC to the site, with lower levels coming from other sites. These air mass sources were featured by the effective carbon ratio (ECR). Full article
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Open AccessArticle New Potential Biomarker for Methasterone Misuse in Human Urine by Liquid Chromatography Quadrupole Time of Flight Mass Spectrometry
Int. J. Mol. Sci. 2016, 17(10), 1628; doi:10.3390/ijms17101628
Received: 11 July 2016 / Revised: 14 September 2016 / Accepted: 19 September 2016 / Published: 24 September 2016
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Abstract
In this study, methasterone urinary metabolic profiles were investigated by liquid chromatography quadrupole time of flight mass spectrometry (LC-QTOF-MS) in full scan and targeted MS/MS modes with accurate mass measurement. A healthy male volunteer was asked to take the drug and liquid–liquid extraction
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In this study, methasterone urinary metabolic profiles were investigated by liquid chromatography quadrupole time of flight mass spectrometry (LC-QTOF-MS) in full scan and targeted MS/MS modes with accurate mass measurement. A healthy male volunteer was asked to take the drug and liquid–liquid extraction was employed to process urine samples. Chromatographic peaks for potential metabolites were hunted out with the theoretical [M − H] as a target ion in a full scan experiment and actual deprotonated ions were studied in targeted MS/MS experiment. Fifteen metabolites including two new sulfates (S1 and S2), three glucuronide conjugates (G2, G6 and G7), and three free metabolites (M2, M4 and M6) were detected for methasterone. Three metabolites involving G4, G5 and M5 were obtained for the first time in human urine samples. Owing to the absence of helpful fragments to elucidate the steroid ring structure of methasterone phase II metabolites, gas chromatography mass spectrometry (GC-MS) was employed to obtain structural information of the trimethylsilylated phase I metabolite released after enzymatic hydrolysis and the potential structure was inferred using a combined MS method. Metabolite detection times were also analyzed and G2 (18-nor-17β-hydroxymethyl-2α, 17α-dimethyl-androst-13-en-3α-ol-ξ-O-glucuronide) was thought to be new potential biomarker for methasterone misuse which can be detected up to 10 days. Full article
(This article belongs to the Special Issue Metabolomic Technologies in Medicine)
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Open AccessArticle In Situ, High-Resolution Profiles of Labile Metals in Sediments of Lake Taihu
Int. J. Environ. Res. Public Health 2016, 13(9), 884; doi:10.3390/ijerph13090884
Received: 31 May 2016 / Revised: 10 August 2016 / Accepted: 26 August 2016 / Published: 6 September 2016
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Abstract
Characterizing labile metal distribution and biogeochemical behavior in sediments is crucial for understanding their contamination characteristics in lakes, for which in situ, high-resolution data is scare. The diffusive gradient in thin films (DGT) technique was used in-situ at five sites across Lake Taihu
[...] Read more.
Characterizing labile metal distribution and biogeochemical behavior in sediments is crucial for understanding their contamination characteristics in lakes, for which in situ, high-resolution data is scare. The diffusive gradient in thin films (DGT) technique was used in-situ at five sites across Lake Taihu in the Yangtze River delta in China to characterize the distribution and mobility of eight labile metals (Fe, Mn, Zn, Ni, Cu, Pb, Co and Cd) in sediments at a 3 mm spatial resolution. The results showed a great spatial heterogeneity in the distributions of redox-sensitive labile Fe, Mn and Co in sediments, while other metals had much less marked structure, except for downward decreases of labile Pb, Ni, Zn and Cu in the surface sediment layers. Similar distributions were found between labile Mn and Co and among labile Ni, Cu and Zn, reflecting a close link between their geochemical behaviors. The relative mobility, defined as the ratio of metals accumulated by DGT to the total contents in a volume of sediments with a thickness of 10 mm close to the surface of DGT probe, was the greatest for Mn and Cd, followed by Zn, Ni, Cu and Co, while Pb and Fe had the lowest mobility; this order generally agreed with that defined by the modified BCR approach. Further analyses showed that the downward increases of pH values in surface sediment layer may decrease the lability of Pb, Ni, Zn and Cu as detected by DGT, while the remobilization of redox-insensitive metals in deep sediment layer may relate to Mn cycling through sulphide coprecipitation, reflected by several corresponding minima between these metals and Mn. These in situ data provided the possibility for a deep insight into the mechanisms involved in the remobilization of metals in freshwater sediments. Full article
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Open AccessArticle Imbalance between Glutamate and GABA in Fmr1 Knockout Astrocytes Influences Neuronal Development
Genes 2016, 7(8), 45; doi:10.3390/genes7080045
Received: 7 June 2016 / Revised: 16 July 2016 / Accepted: 25 July 2016 / Published: 10 August 2016
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Abstract
Fragile X syndrome (FXS) is a form of inherited mental retardation that results from the absence of the fragile X mental retardation protein (FMRP), the product of the Fmr1 gene. Numerous studies have shown that FMRP expression in astrocytes is important in the
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Fragile X syndrome (FXS) is a form of inherited mental retardation that results from the absence of the fragile X mental retardation protein (FMRP), the product of the Fmr1 gene. Numerous studies have shown that FMRP expression in astrocytes is important in the development of FXS. Although astrocytes affect neuronal dendrite development in Fmr1 knockout (KO) mice, the factors released by astrocytes are still unclear. We cultured wild type (WT) cortical neurons in astrocyte-conditioned medium (ACM) from WT or Fmr1 KO mice. Immunocytochemistry and Western blotting were performed to detect the dendritic growth of both WT and KO neurons. We determined glutamate and γ-aminobutyric acid (GABA) levels using high-performance liquid chromatography (HPLC). The total neuronal dendritic length was reduced when cultured in the Fmr1 KO ACM. This neurotoxicity was triggered by an imbalanced release of glutamate and GABA from Fmr1 KO astrocytes. We found increased glutaminase and GABA transaminase (GABA-T) expression and decreased monoamine oxidase B expression in Fmr1 KO astrocytes. The elevated levels of glutamate contributed to oxidative stress in the cultured neurons. Vigabatrin (VGB), a GABA-T inhibitor, reversed the changes caused by glutamate and GABA release in Fmr1 KO astrocytes and the abnormal behaviors in Fmr1 KO mice. Our results indicate that the imbalance in the astrocytic glutamate and GABA release may be involved in the neuropathology and the underlying symptoms of FXS, and provides a therapeutic target for treatment. Full article
(This article belongs to the Special Issue Genetic and Epigenetic Factors of Mental Disorders)
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Open AccessArticle The Effects of Aquaporin-1 in Pulmonary Edema Induced by Fat Embolism Syndrome
Int. J. Mol. Sci. 2016, 17(7), 1183; doi:10.3390/ijms17071183
Received: 4 June 2016 / Revised: 11 July 2016 / Accepted: 15 July 2016 / Published: 21 July 2016
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Abstract
This study was designed to investigate the role of aquaporin1 (AQP1) in the pathologic process of pulmonary edema induced by fat embolism syndrome (FES) and the effects of a free fatty acid (FFA) mixture on AQP1 expression in pulmonary microvascular endothelial cells (PMVECs).
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This study was designed to investigate the role of aquaporin1 (AQP1) in the pathologic process of pulmonary edema induced by fat embolism syndrome (FES) and the effects of a free fatty acid (FFA) mixture on AQP1 expression in pulmonary microvascular endothelial cells (PMVECs). In vivo, edema was more serious in FES mice compared with the control group. The expression of AQP1 and the wet-to-dry lung weight ratio (W/D) in the FES group were significantly increased compared with the control group. At the same time, inhibition of AQP1 decreased the pathological damage resulting from pulmonary edema. Then we performed a study in vitro to investigate whether AQP1 was induced by FFA release in FES. The mRNA and protein level of AQP1 were increased by FFAs in a dose- and time-dependent manner in PMVECs. In addition, the up-regulation of AQP1 was blocked by the inhibitor of p38 kinase, implicating the p38 MAPK pathway as involved in the FFA-induced AQP1 up-regulation in PMVECs. Our results demonstrate that AQP1 may play important roles in pulmonary edema induced by FES and can be regarded as a new therapy target for treatment of pulmonary edema induced by FES. Full article
(This article belongs to the Special Issue Aquaporin)
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Open AccessArticle A Novel Azimuth Super-Resolution Method by Synthesizing Azimuth Bandwidth of Multiple Tracks of Airborne Stripmap SAR Data
Sensors 2016, 16(6), 869; doi:10.3390/s16060869
Received: 7 March 2016 / Revised: 13 May 2016 / Accepted: 8 June 2016 / Published: 13 June 2016
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Abstract
Azimuth resolution of airborne stripmap synthetic aperture radar (SAR) is restricted by the azimuth antenna size. Conventionally, a higher azimuth resolution should be achieved by employing alternate modes that steer the beam in azimuth to enlarge the synthetic antenna aperture. However, if a
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Azimuth resolution of airborne stripmap synthetic aperture radar (SAR) is restricted by the azimuth antenna size. Conventionally, a higher azimuth resolution should be achieved by employing alternate modes that steer the beam in azimuth to enlarge the synthetic antenna aperture. However, if a data set of a certain region, consisting of multiple tracks of airborne stripmap SAR data, is available, the azimuth resolution of specific small region of interest (ROI) can be conveniently improved by a novel azimuth super-resolution method as introduced by this paper. The proposed azimuth super-resolution method synthesize the azimuth bandwidth of the data selected from multiple discontinuous tracks and contributes to a magnifier-like function with which the ROI can be further zoomed in with a higher azimuth resolution than that of the original stripmap images. Detailed derivation of the azimuth super-resolution method, including the steps of two-dimensional dechirping, residual video phase (RVP) removal, data stitching and data correction, is provided. The restrictions of the proposed method are also discussed. Lastly, the presented approach is evaluated via both the single- and multi-target computer simulations. Full article
Open AccessArticle Molecular Characterization of the Complete Genome of Three Basal-BR Isolates of Turnip mosaic virus Infecting Raphanus sativus in China
Int. J. Mol. Sci. 2016, 17(6), 888; doi:10.3390/ijms17060888
Received: 25 March 2016 / Revised: 16 May 2016 / Accepted: 27 May 2016 / Published: 4 June 2016
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Abstract
Turnip mosaic virus (TuMV) infects crops of plant species in the family Brassicaceae worldwide. TuMV isolates were clustered to five lineages corresponding to basal-B, basal-BR, Asian-BR, world-B and OMs. Here, we determined the complete genome sequences of three TuMV basal-BR isolates infecting radish
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Turnip mosaic virus (TuMV) infects crops of plant species in the family Brassicaceae worldwide. TuMV isolates were clustered to five lineages corresponding to basal-B, basal-BR, Asian-BR, world-B and OMs. Here, we determined the complete genome sequences of three TuMV basal-BR isolates infecting radish from Shandong and Jilin Provinces in China. Their genomes were all composed of 9833 nucleotides, excluding the 3′-terminal poly(A) tail. They contained two open reading frames (ORFs), with the large one encoding a polyprotein of 3164 amino acids and the small overlapping ORF encoding a PIPO protein of 61 amino acids, which contained the typically conserved motifs found in members of the genus Potyvirus. In pairwise comparison with 30 other TuMV genome sequences, these three isolates shared their highest identities with isolates from Eurasian countries (Germany, Italy, Turkey and China). Recombination analysis showed that the three isolates in this study had no “clear” recombination. The analyses of conserved amino acids changed between groups showed that the codons in the TuMV out group (OGp) and OMs group were the same at three codon sites (852, 1006, 1548), and the other TuMV groups (basal-B, basal-BR, Asian-BR, world-B) were different. This pattern suggests that the codon in the OMs progenitor did not change but that in the other TuMV groups the progenitor sequence did change at divergence. Genetic diversity analyses indicate that the PIPO gene was under the highest selection pressure and the selection pressure on P3N-PIPO and P3 was almost the same. It suggests that most of the selection pressure on P3 was probably imposed through P3N-PIPO. Full article
(This article belongs to the Section Molecular Botany)
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Open AccessArticle Degradation of Swainsonine by the NADP-Dependent Alcohol Dehydrogenase A1R6C3 in Arthrobacter sp. HW08
Toxins 2016, 8(5), 145; doi:10.3390/toxins8050145
Received: 9 March 2016 / Revised: 29 April 2016 / Accepted: 5 May 2016 / Published: 16 May 2016
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Abstract
Swainsonine is an indolizidine alkaloid that has been found in locoweeds and some fungi. Our previous study demonstrated that Arthrobacter sp. HW08 or its crude enzyme extract could degrade swainsonie efficiently. However, the mechanism of swainsonine degradation in bacteria remains unclear. In this
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Swainsonine is an indolizidine alkaloid that has been found in locoweeds and some fungi. Our previous study demonstrated that Arthrobacter sp. HW08 or its crude enzyme extract could degrade swainsonie efficiently. However, the mechanism of swainsonine degradation in bacteria remains unclear. In this study, we used label-free quantitative proteomics method based on liquid chromatography-electrospray ionization-tandem mass spectrometry to dissect the mechanism of swainsonine biodegradation by Arthrobacter sp. HW08. The results showed that 129 differentially expressed proteins were relevant to swainsonine degradation. These differentially expressed proteins were mostly related to the biological process of metabolism and the molecular function of catalytic activity. Among the 129 differentially expressed proteins, putative sugar phosphate isomerase/epimerase A1R5X7, Acetyl-CoA acetyltransferase A0JZ95, and nicotinamide adenine dinucleotide phosphate (NADP)-dependent alcohol dehydrogenase A1R6C3 were found to contribute to the swainsonine degradation. Notably, NADP-dependent alcohol dehyrodgenase A1R6C3 appeared to play a major role in degrading swainsonine, but not as much as Arthrobacter sp. HW08 did. Collectively, our findings here provide insights to understand the mechanism of swainsonine degradation in bacteria. Full article
(This article belongs to the Section Plant Toxins)
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Open AccessArticle Protein 2B of Coxsackievirus B3 Induces Autophagy Relying on Its Transmembrane Hydrophobic Sequences
Viruses 2016, 8(5), 131; doi:10.3390/v8050131
Received: 5 February 2016 / Revised: 18 April 2016 / Accepted: 26 April 2016 / Published: 12 May 2016
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Abstract
Coxsackievirus B (CVB) belongs to Enterovirus genus within the Picornaviridae family, and it is one of the most common causative pathogens of viral myocarditis in young adults. The pathogenesis of myocarditis caused by CVB has not been completely elucidated. In CVB infection, autophagy
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Coxsackievirus B (CVB) belongs to Enterovirus genus within the Picornaviridae family, and it is one of the most common causative pathogens of viral myocarditis in young adults. The pathogenesis of myocarditis caused by CVB has not been completely elucidated. In CVB infection, autophagy is manipulated to facilitate viral replication. Here we report that protein 2B, one of the non-structural proteins of CVB3, possesses autophagy-inducing capability. The autophagy-inducing motif of protein 2B was identified by the generation of truncated 2B and site-directed mutagenesis. The expression of 2B alone was sufficient to induce the formation of autophagosomes in HeLa cells, while truncated 2B containing the two hydrophobic regions of the protein also induced autophagy. In addition, we demonstrated that a single amino acid substitution (56V→A) in the stem loop in between the two hydrophobic regions of protein 2B abolished the formation of autophagosomes. Moreover, we found that 2B and truncated 2B with autophagy-inducting capability were co-localized with LC3-II. This study indicates that protein 2B relies on its transmembrane hydrophobic regions to induce the formation of autophagosomes, while 56 valine residue in the stem loop of protein 2B might exert critical structural influence on its two hydrophobic regions. These results may provide new insight for understanding the molecular mechanism of autophagy triggered by CVB infection. Full article
(This article belongs to the Section Animal Viruses)
Open AccessArticle Chemopreventive Effect of Dietary Glutamineon Colitis-Associated Colorectal Cancer Is Associated with Modulation of the DEPTOR/mTOR Signaling Pathway
Nutrients 2016, 8(5), 261; doi:10.3390/nu8050261
Received: 4 February 2016 / Revised: 23 April 2016 / Accepted: 26 April 2016 / Published: 2 May 2016
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Abstract
Glutamine plays a protective role in colitis and colitis-associated colorectal cancer (CAC); however, the protective mechanisms are largely unknown to date. DEP domain-containing mTOR-interacting protein (DEPTOR)/mammalian Target of Rapamycin (mTOR) signaling plays an important role in carcinogenesis. The present study investigated the potential
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Glutamine plays a protective role in colitis and colitis-associated colorectal cancer (CAC); however, the protective mechanisms are largely unknown to date. DEP domain-containing mTOR-interacting protein (DEPTOR)/mammalian Target of Rapamycin (mTOR) signaling plays an important role in carcinogenesis. The present study investigated the potential molecular mechanisms for the protective effect of glutamine in a murine model of azoxymethane (AOM)/dextran sulfate sodium (DSS)-induced CAC. The effects of glutamine on DEPTOR/mTOR signaling and protein light chain 3 (LC3) were evaluated. Administration of glutamine was associated with attenuated development of CAC. Increased expression of DEPTOR and decreased expressions of factors of mTOR signaling, including phospho-mTOR, phospho-STAT3, phospho-Akt, and phospho-S6, were observed in AOM/DSS mice administered glutamine. Furthermore, oral glutamine was associated with increased LC3-II expression in AOM/DSS mice. The present study indicates that regulation of DEPTOR/mTOR signaling may be an important mechanism for glutamine in prevention against the development of CAC. In addition, the chemopreventive effect of dietary glutamine on CAC is, at least in part, associated with the induction of autophagy. Full article
Open AccessArticle Schottky Barrier Height Tuning via the Dopant Segregation Technique through Low-Temperature Microwave Annealing
Materials 2016, 9(5), 315; doi:10.3390/ma9050315
Received: 29 February 2016 / Revised: 19 April 2016 / Accepted: 21 April 2016 / Published: 27 April 2016
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Abstract
The Schottky junction source/drain structure has great potential to replace the traditional p/n junction source/drain structure of the future ultra-scaled metal-oxide-semiconductor field effect transistors (MOSFETs), as it can form ultimately shallow junctions. However, the effective Schottky barrier height (SBH) of the Schottky junction
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The Schottky junction source/drain structure has great potential to replace the traditional p/n junction source/drain structure of the future ultra-scaled metal-oxide-semiconductor field effect transistors (MOSFETs), as it can form ultimately shallow junctions. However, the effective Schottky barrier height (SBH) of the Schottky junction needs to be tuned to be lower than 100 meV in order to obtain a high driving current. In this paper, microwave annealing is employed to modify the effective SBH of NiSi on Si via boron or arsenic dopant segregation. The barrier height decreased from 0.4–0.7 eV to 0.2–0.1 eV for both conduction polarities by annealing below 400 °C. Compared with the required temperature in traditional rapid thermal annealing, the temperature demanded in microwave annealing is ~60 °C lower, and the mechanisms of this observation are briefly discussed. Microwave annealing is hence of high interest to future semiconductor processing owing to its unique capability of forming the metal/semiconductor contact at a remarkably lower temperature. Full article
(This article belongs to the Special Issue Microwave Materials Processing)
Open AccessArticle Geometry-Based Distributed Spatial Skyline Queries in Wireless Sensor Networks
Sensors 2016, 16(4), 454; doi:10.3390/s16040454
Received: 22 January 2016 / Revised: 14 March 2016 / Accepted: 21 March 2016 / Published: 29 March 2016
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Abstract
Algorithms for skyline querying based on wireless sensor networks (WSNs) have been widely used in the field of environmental monitoring. Because of the multi-dimensional nature of the problem of monitoring spatial position, traditional skyline query strategies cause enormous computational costs and energy consumption.
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Algorithms for skyline querying based on wireless sensor networks (WSNs) have been widely used in the field of environmental monitoring. Because of the multi-dimensional nature of the problem of monitoring spatial position, traditional skyline query strategies cause enormous computational costs and energy consumption. To ensure the efficient use of sensor energy, a geometry-based distributed spatial query strategy (GDSSky) is proposed in this paper. Firstly, the paper presents a geometry-based region partition strategy. It uses the skyline area reduction method based on the convex hull vertices, to quickly query the spatial skyline data related to a specific query area, and proposes a regional partition strategy based on the triangulation method, to implement distributed queries in each sub-region and reduce the comparison times between nodes. Secondly, a sub-region clustering strategy is designed to group the data inside into clusters for parallel queries that can save time. Finally, the paper presents a distributed query strategy based on the data node tree to traverse all adjacent sensors’ monitoring locations. It conducts spatial skyline queries for spatial skyline data that have been obtained and not found respectively, so as to realize the parallel queries. A large number of simulation results shows that GDSSky can quickly return the places which are nearer to query locations and have larger pollution capacity, and significantly reduce the WSN energy consumption. Full article
(This article belongs to the Special Issue Identification, Information & Knowledge in the Internet of Things)
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Open AccessReview Ochratoxin A Producing Fungi, Biosynthetic Pathway and Regulatory Mechanisms
Toxins 2016, 8(3), 83; doi:10.3390/toxins8030083
Received: 1 February 2016 / Revised: 28 February 2016 / Accepted: 14 March 2016 / Published: 21 March 2016
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Abstract
Ochratoxin A (OTA), mainly produced by Aspergillus and Penicillum species, is one of the most important mycotoxin contaminants in agricultural products. It is detrimental to human health because of its nephrotoxicity, hepatotoxicity, carcinogenicity, teratogenicity, and immunosuppression. OTA structurally consists of adihydrocoumarin moiety linked
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Ochratoxin A (OTA), mainly produced by Aspergillus and Penicillum species, is one of the most important mycotoxin contaminants in agricultural products. It is detrimental to human health because of its nephrotoxicity, hepatotoxicity, carcinogenicity, teratogenicity, and immunosuppression. OTA structurally consists of adihydrocoumarin moiety linked with l-phenylalanine via an amide bond. OTA biosynthesis has been putatively hypothesized, although several contradictions exist on some processes of the biosynthetic pathway. We discuss recent information on molecular studies of OTA biosynthesis despite insufficient genetic background in detail. Accordingly, genetic regulation has also been explored with regard to the interaction between the regulators and the environmental factors. In this review, we focus on three aspects of OTA: OTA-producing strains, OTA biosynthetic pathway and the regulation mechanisms of OTA production. This can pave the way to assist in protecting food and feed from OTA contamination by understanding OTA biosynthetic pathway and regulatory mechanisms. Full article
(This article belongs to the collection Ochratoxins-Collection)
Open AccessArticle Effects of Air Pollution on Hospital Emergency Room Visits for Respiratory Diseases: Urban-Suburban Differences in Eastern China
Int. J. Environ. Res. Public Health 2016, 13(3), 341; doi:10.3390/ijerph13030341
Received: 26 January 2016 / Revised: 11 March 2016 / Accepted: 14 March 2016 / Published: 19 March 2016
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Abstract
A study on the relationships between ambient air pollutants (PM2.5, SO2 and NO2) and hospital emergency room visits (ERVs) for respiratory diseases from 2013 to 2014 was performed in both urban and suburban areas of Jinan, a heavily
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A study on the relationships between ambient air pollutants (PM2.5, SO2 and NO2) and hospital emergency room visits (ERVs) for respiratory diseases from 2013 to 2014 was performed in both urban and suburban areas of Jinan, a heavily air-polluted city in Eastern China. This research was analyzed using generalized additive models (GAM) with Poisson regression, which controls for long-time trends, the “day of the week” effect and meteorological parameters. An increase of 10 μg/m3 in PM2.5, SO2 and NO2 corresponded to a 1.4% (95% confidence interval (CI): 0.7%, 2.1%), 1.2% (95% CI: 0.5%, 1.9%), and 2.5% (95%: 0.8%, 4.2%) growth in ERVs for the urban population, respectively, and a 1.5% (95%: 0.4%, 2.6%), 0.8% (95%: −0.7%, 2.3%), and 3.1% (95%: 0.5%, 5.7%) rise in ERVs for the suburban population, respectively. It was found that females were more susceptible than males to air pollution in the urban area when the analysis was stratified by gender, and the reverse result was seen in the suburban area. Our results suggest that the increase in ERVs for respiratory illnesses is linked to the levels of air pollutants in Jinan, and there may be some urban-suburban discrepancies in health outcomes from air pollutant exposure. Full article
Open AccessArticle Rapid and Sensitive Detection of Vibrio parahaemolyticus and Vibrio vulnificus by Multiple Endonuclease Restriction Real-Time Loop-Mediated Isothermal Amplification Technique
Molecules 2016, 21(1), 111; doi:10.3390/molecules21010111
Received: 24 November 2015 / Revised: 11 January 2016 / Accepted: 13 January 2016 / Published: 19 January 2016
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Abstract
Vibrio parahaemolyticus and Vibrio vulnificus are two marine seafood-borne pathogens causing severe illnesses in humans and aquatic animals. In this study, a recently developed novel multiple endonuclease restriction real-time loop-mediated isothermal amplification technology (MERT-LAMP) were successfully developed and evaluated for simultaneous detection of
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Vibrio parahaemolyticus and Vibrio vulnificus are two marine seafood-borne pathogens causing severe illnesses in humans and aquatic animals. In this study, a recently developed novel multiple endonuclease restriction real-time loop-mediated isothermal amplification technology (MERT-LAMP) were successfully developed and evaluated for simultaneous detection of V. parahaemolyticus and V. vulnificus strains in only a single reaction. Two MERT-LAMP primer sets were designed to specifically target toxR gene of V. parahaemolyticus and rpoS gene of V. vulnificus. The MERT-LAMP reactions were conducted at 62 °C, and the positive results were produced in as short as 19 min with the genomic DNA templates extracted from the V. parahaemolyticus and V. vulnificus strains. The two target pathogens present in the same sample could be simultaneously detected and correctly differentiated based on distinct fluorescence curves in a real-time format. The sensitivity of MERT-LAMP assay was 250 fg and 125 fg DNA per reaction with genomic templates of V. parahaemolyticus and V. vulnificus strains, which was in conformity with conventional LAMP detection. Compared with PCR-based techniques, the MERT-LAMP technology was 100- and 10-fold more sensitive than that of PCR and qPCR methods. Moreover, the limit of detection of MERT-LAMP approach for V. parahaemolyticus isolates and V. vulnificus isolates detection in artificially-contaminated oyster samples was 92 CFU and 83 CFU per reaction. In conclusion, the MERT-LAMP assay presented here was a rapid, specific, and sensitive tool for the detection of V. parahaemolyticus and V. vulnificus, and could be adopted for simultaneous screening of V. parahaemolyticus and V. vulnificus in a wide variety of samples. Full article
(This article belongs to the Section Natural Products)
Open AccessArticle An Energy-Efficient Skyline Query for Massively Multidimensional Sensing Data
Sensors 2016, 16(1), 83; doi:10.3390/s16010083
Received: 29 September 2015 / Revised: 7 December 2015 / Accepted: 6 January 2016 / Published: 9 January 2016
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Abstract
Cyber physical systems (CPS) sense the environment based on wireless sensor networks. The sensing data of such systems present the characteristics of massiveness and multi-dimensionality. As one of the major monitoring methods used in in safe production monitoring and disaster early-warning applications, skyline
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Cyber physical systems (CPS) sense the environment based on wireless sensor networks. The sensing data of such systems present the characteristics of massiveness and multi-dimensionality. As one of the major monitoring methods used in in safe production monitoring and disaster early-warning applications, skyline query algorithms are extensively adopted for multiple-objective decision analysis of these sensing data. With the expansion of network sizes, the amount of sensing data increases sharply. Then, how to improve the query efficiency of skyline query algorithms and reduce the transmission energy consumption become pressing and difficult to accomplish issues. Therefore, this paper proposes a new energy-efficient skyline query method for massively multidimensional sensing data. First, the method uses a node cut strategy to dynamically generate filtering tuples with little computational overhead when collecting query results instead of issuing queries with filters. It can judge the domination relationship among different nodes, remove the detected data sets of dominated nodes that are irrelevant to the query, modify the query path dynamically, and reduce the data comparison and computational overhead. The efficient dynamic filter generated by this strategy uses little non-skyline data transmission in the network, and the transmission distance is very short. Second, our method also employs the tuple-cutting strategy inside the node and generates the local cutting tuples by the sub-tree with the node itself as the root node, which will be used to cut the detected data within the nodes of the sub-tree. Therefore, it can further control the non-skyline data uploading. A large number of experimental results show that our method can quickly return an overview of the monitored area and reduce the communication overhead. Additionally, it can shorten the response time and improve the efficiency of the query. Full article
(This article belongs to the Special Issue Cyber-Physical Systems)
Open AccessArticle The Novel Multiple Inner Primers-Loop-Mediated Isothermal Amplification (MIP-LAMP) for Rapid Detection and Differentiation of Listeria monocytogenes
Molecules 2015, 20(12), 21515-21531; doi:10.3390/molecules201219787
Received: 9 September 2015 / Revised: 16 November 2015 / Accepted: 16 November 2015 / Published: 3 December 2015
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Abstract
Here, a novel model of loop-mediated isothermal amplification (LAMP), termed multiple inner primers-LAMP (MIP-LAMP), was devised and successfully applied to detect Listeria monocytogenes. A set of 10 specific MIP-LAMP primers, which recognized 14 different regions of target gene, was designed to target
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Here, a novel model of loop-mediated isothermal amplification (LAMP), termed multiple inner primers-LAMP (MIP-LAMP), was devised and successfully applied to detect Listeria monocytogenes. A set of 10 specific MIP-LAMP primers, which recognized 14 different regions of target gene, was designed to target a sequence in the hlyA gene. The MIP-LAMP assay efficiently amplified the target element within 35 min at 63 °C and was evaluated for sensitivity and specificity. The templates were specially amplified in the presence of the genomic DNA from L. monocytogenes. The limit of detection (LoD) of MIP-LAMP assay was 62.5 fg/reaction using purified L. monocytogenes DNA. The LoD for DNA isolated from serial dilutions of L. monocytogenes cells in buffer and in milk corresponded to 2.4 CFU and 24 CFU, respectively. The amplified products were analyzed by real-time monitoring of changes in turbidity, and visualized by adding Loop Fluorescent Detection Reagent (FD), or as a ladder-like banding pattern on gel electrophoresis. A total of 48 pork samples were investigated for L. monocytogenes by the novel MIP-LAMP method, and the diagnostic accuracy was shown to be 100% when compared to the culture-biotechnical method. In conclusion, the MIP-LAMP methodology was demonstrated to be a reliable, sensitive and specific tool for rapid detection of L. monocytogenes strains. Full article
(This article belongs to the Section Molecular Diversity)
Open AccessArticle An Improved PDR/Magnetometer/Floor Map Integration Algorithm for Ubiquitous Positioning Using the Adaptive Unscented Kalman Filter
ISPRS Int. J. Geo-Inf. 2015, 4(4), 2638-2659; doi:10.3390/ijgi4042638
Received: 25 August 2015 / Accepted: 17 September 2015 / Published: 25 November 2015
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Abstract
In this paper, a scheme is presented for fusing a foot-mounted Inertial Measurement Unit (IMU) and a floor map to provide ubiquitous positioning in a number of settings, such as in a supermarket as a shopping guide, in a fire emergency service for
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In this paper, a scheme is presented for fusing a foot-mounted Inertial Measurement Unit (IMU) and a floor map to provide ubiquitous positioning in a number of settings, such as in a supermarket as a shopping guide, in a fire emergency service for navigation, or with a hospital patient to be tracked. First, several Zero-Velocity Detection (ZDET) algorithms are compared and discussed when used in the static detection of a pedestrian. By introducing information on the Zero Velocity of the pedestrian, fused with a magnetometer measurement, an improved Pedestrian Dead Reckoning (PDR) model is developed to constrain the accumulating errors associated with the PDR positioning. Second, a Correlation Matching Algorithm based on map projection (CMAP) is presented, and a zone division of a floor map is demonstrated for fusion of the PDR algorithm. Finally, in order to use the dynamic characteristics of a pedestrian’s trajectory, the Adaptive Unscented Kalman Filter (A-UKF) is applied to tightly integrate the IMU, magnetometers and floor map for ubiquitous positioning. The results of a field experiment performed on the fourth floor of the School of Environmental Science and Spatial Informatics (SESSI) building on the China University of Mining and Technology (CUMT) campus confirm that the proposed scheme can reliably achieve meter-level positioning. Full article
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Open AccessArticle Accumulation and Phosphorylation of RecQ-Mediated Genome Instability Protein 1 (RMI1) at Serine 284 and Serine 292 during Mitosis
Int. J. Mol. Sci. 2015, 16(11), 26395-26405; doi:10.3390/ijms161125965
Received: 15 September 2015 / Revised: 22 October 2015 / Accepted: 26 October 2015 / Published: 4 November 2015
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Abstract
Chromosome instability usually leads to tumorigenesis. Bloom syndrome (BS) is a genetic disease associated with chromosome instability. The BS gene product, BLM, has been reported to function in the spindle assembly checkpoint (SAC) to prevent chromosome instability. BTR complex, composed of BLM, topoisomerase
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Chromosome instability usually leads to tumorigenesis. Bloom syndrome (BS) is a genetic disease associated with chromosome instability. The BS gene product, BLM, has been reported to function in the spindle assembly checkpoint (SAC) to prevent chromosome instability. BTR complex, composed of BLM, topoisomerase IIIα (Topo IIIα), RMI1 (RecQ-mediated genome instability protein 1, BLAP75) and RMI2 (RecQ-mediated genome instability protein 2, BLAP18), is crucial for maintaining genome stability. Recent work has demonstrated that RMI2 also plays critical role in SAC. However, little is know about RMI1 regulation during the cell cycle. Here we present that RMI1 protein level does not change through G1, S and G2 phases, but significantly increases in M phase. Moreover, phosphorylation of RMI1 occurs in mitosis. Upon microtubule-disturbing agent, RMI1 is phosphorylated primarily at the sites of Serine 284 and Serine 292, which does not interfere with the formation of BTR complex. Additionally, this phosphorylation is partially reversed by roscovitine treatment, implying cycling-dependent kinase 1 (CDK1) might be one of the upstream kinases. Full article
(This article belongs to the Special Issue Molecular Machinery of Cell Growth Regulation)
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Open AccessArticle The Influence of Sandstorms and Long-Range Transport on Polycyclic Aromatic Hydrocarbons (PAHs) in PM2.5 in the High-Altitude Atmosphere of Southern China
Atmosphere 2015, 6(11), 1633-1651; doi:10.3390/atmos6111633
Received: 9 September 2015 / Revised: 21 October 2015 / Accepted: 22 October 2015 / Published: 30 October 2015
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Abstract
PM2.5 (Particulate Matter 2.5) samples were collected at Mount Heng and analyzed for polycyclic aromatic hydrocarbons (PAHs). During sampling, a sandstorm from northern China struck Mount Heng and resulted in a mean PM2.5 concentration of 150.61 μg/m3, which greatly
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PM2.5 (Particulate Matter 2.5) samples were collected at Mount Heng and analyzed for polycyclic aromatic hydrocarbons (PAHs). During sampling, a sandstorm from northern China struck Mount Heng and resulted in a mean PM2.5 concentration of 150.61 μg/m3, which greatly exceeded the concentration measured under normal conditions (no sandstorm: 58.50 μg/m3). The average mass of PAHs in PM2.5 was 30.70 μg/g, which was much lower than in the non-sandstorm samples (80.80 μg/g). Therefore, the sandstorm increased particle levels but decreased PAH concentrations due to dilution and turbulence. During the sandstorm, the concentrations of 4- and 5-ring PAHs were below their detection limits, and 6-ring PAHs were the most abundant. Under normal conditions, the concentrations of 2-, 3- and 6-ring PAHs were higher, and 4- and 5-ring PAHs were lower relative to the other sampling sites. In general, the PAH contamination was low to medium at Mount Heng. Higher LMW (low molecular weight) concentrations were primarily linked to meteorological conditions, and higher HMW (high molecular weight) concentrations primarily resulted from long-range transport. Analysis of diagnostic ratios indicated that PM2.5 PAHs had been emitted during the combustion of coal, wood or petroleum. The transport characteristics and origins of the PAHs were investigated using backwards Lagrangian particle dispersion modeling. Under normal conditions, the “footprint” retroplumes and potential source contributions of PAHs for the highest and lowest concentrations indicated that local sources had little effect. In contrast, long-range transport played a vital role in the levels of PM2.5 and PAHs in the high-altitude atmosphere. Full article
(This article belongs to the Special Issue Atmospheric Composition Observations) Printed Edition available
Open AccessReview Mesoporous Transition Metal Oxides for Supercapacitors
Nanomaterials 2015, 5(4), 1667-1689; doi:10.3390/nano5041667
Received: 18 August 2015 / Revised: 8 October 2015 / Accepted: 8 October 2015 / Published: 14 October 2015
Cited by 26 | Viewed by 2007 | PDF Full-text (3355 KB) | HTML Full-text | XML Full-text
Abstract
Recently, transition metal oxides, such as ruthenium oxide (RuO2), manganese dioxide (MnO2), nickel oxides (NiO) and cobalt oxide (Co3O4), have been widely investigated as electrode materials for pseudo-capacitors. In particular, these metal oxides with mesoporous
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Recently, transition metal oxides, such as ruthenium oxide (RuO2), manganese dioxide (MnO2), nickel oxides (NiO) and cobalt oxide (Co3O4), have been widely investigated as electrode materials for pseudo-capacitors. In particular, these metal oxides with mesoporous structures have become very hot nanomaterials in the field of supercapacitors owing to their large specific surface areas and suitable pore size distributions. The high specific capacities of these mesoporous metal oxides are resulted from the effective contacts between electrode materials and electrolytes as well as fast transportation of ions and electrons in the bulk of electrode and at the interface of electrode and electrolyte. During the past decade, many achievements on mesoporous transition metal oxides have been made. In this mini-review, we select several typical nanomaterials, such as RuO2, MnO2, NiO, Co3O4 and nickel cobaltite (NiCo2O4), and briefly summarize the recent research progress of these mesoporous transition metal oxides-based electrodes in the field of supercapacitors. Full article
(This article belongs to the Special Issue Frontiers in Mesoporous Nanomaterials)
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Open AccessArticle Chemical Composition, Antioxidative and Anticancer Activities of the Essential Oil: Curcumae RhizomaSparganii Rhizoma, a Traditional Herb Pair
Molecules 2015, 20(9), 15781-15796; doi:10.3390/molecules200915781
Received: 3 August 2015 / Revised: 20 August 2015 / Accepted: 25 August 2015 / Published: 28 August 2015
Cited by 2 | Viewed by 1190 | PDF Full-text (989 KB) | HTML Full-text | XML Full-text
Abstract
As a classical herb pair in clinics of traditional Chinese medicine, Curcumae RhizomaSparganii Rhizoma (HP CR–SR) is used for activating blood circulation to remove blood stasis. The essential components in HP CR–SR and its single herbs were comparatively analyzed using gas
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As a classical herb pair in clinics of traditional Chinese medicine, Curcumae RhizomaSparganii Rhizoma (HP CR–SR) is used for activating blood circulation to remove blood stasis. The essential components in HP CR–SR and its single herbs were comparatively analyzed using gas chromatography-mass spectrometry data. 66, 22, and 54 components in volatile oils of Curcumae Rhizoma, Sparganii Rhizoma, and HP CR–SR were identified, and total contents accounted for 75.416%, 91.857%, and 79.553% respectively. The thirty-eight components were found in HP CR–SR, and not detected in single herbs Curcumae Rhizoma and Sparganii Rhizoma. The highest radical trapping action was seen by an essential oil of HP CR–SR (IC50 = 0.59 ± 0.04 mg/mL). Furthermore, the HP CR–SR essential oil showed more remarkable cytotoxicity on tumor cell lines than that of the single herbs Curcumae Rhizoma and Sparganii Rhizoma in a dose-dependent manner: IC50 values showing 32.32 ± 5.31 μg/mL (HeLa), 34.76 ± 1.82 μg/mL (BGC823), 74.84 ± 1.66 μg/mL (MCF-7), 66.12 ± 11.23 μg/mL (SKOV3), and 708.24 ± 943.91 μg/mL (A549), respectively. In summary, the essential oil of HP CR–SR is different from any one of Curcumae Rhizoma and Sparganii Rhizoma, nor simply their superposition, and HP CR–SR oil presented more remarkable anticancer and antioxidant activities compared with Curcumae Rhizoma and Sparganii Rhizoma oils. Full article
(This article belongs to the collection Herbal Medicine Research)
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Open AccessArticle Functional Characterization of New Polyketide Synthase Genes Involved in Ochratoxin A Biosynthesis in Aspergillus Ochraceus fc-1
Toxins 2015, 7(8), 2723-2738; doi:10.3390/toxins7082723
Received: 26 June 2015 / Revised: 10 July 2015 / Accepted: 17 July 2015 / Published: 24 July 2015
Cited by 4 | Viewed by 1313 | PDF Full-text (2618 KB) | HTML Full-text | XML Full-text
Abstract
Ochratoxin A (OTA), a potentially carcinogenic mycotoxin which contaminates grains, is produced by several Aspergillus species. A comparative sequence analysis of the OTA-producing Aspergillus ochraceus fc-1 strain and other Aspergillus species was performed. Two new OTA-related polyketide synthase (PKS) (AoOTApks) genes
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Ochratoxin A (OTA), a potentially carcinogenic mycotoxin which contaminates grains, is produced by several Aspergillus species. A comparative sequence analysis of the OTA-producing Aspergillus ochraceus fc-1 strain and other Aspergillus species was performed. Two new OTA-related polyketide synthase (PKS) (AoOTApks) genes were identified. The predicted amino acid sequence of AoOTApks-1 displayed high similarity to previously identified PKSs from OTA-producing A. carbonarius ITEM 5010 (67%; [PI] No. 173482) and A. niger CBS 513.88 (62%; XP_001397313). However, the predicted amino acid sequence of AoOTApks-2 displayed lower homology with A. niger CBS 513.88 (38%) and A. carbonarius ITEM 5010 (28%). A phylogenetic analysis of the β-ketosynthase and acyl-transferase domains of the AoOTApks proteins indicated that they shared a common origin with other OTA-producing species, such as A. carbonarius, A. niger, and A. westerdijkiae. A real-time reverse-transcription PCR analysis showed that the expression of AoOTApks-1 and -2 was positively correlated with the OTA concentration. The pks gene deleted mutants ∆AoOTApks-1 and ∆AoOTApks-2 produced nil and lesser OTA than the wild-type strain, respectively. Our study suggests that AoOTApks-1 could be involved in OTA biosynthesis, while AoOTApks-2 might be indirectly involved in OTA production. Full article
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Open AccessArticle The Association of ADORA2A and ADORA2B Polymorphisms with the Risk and Severity of Chronic Heart Failure: A Case-Control Study of a Northern Chinese Population
Int. J. Mol. Sci. 2015, 16(2), 2732-2746; doi:10.3390/ijms16022732
Received: 18 December 2014 / Accepted: 22 January 2015 / Published: 26 January 2015
Cited by 4 | Viewed by 1253 | PDF Full-text (702 KB) | HTML Full-text | XML Full-text
Abstract
The causes of chronic heart failure (CHF) and its progression are likely to be due to complex genetic factors. Adenosine receptors A2A and A2B (ADORA2A and ADORA2B, respectively) play an important role in cardio-protection. Therefore, polymorphisms in the genes encoding those receptors may
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The causes of chronic heart failure (CHF) and its progression are likely to be due to complex genetic factors. Adenosine receptors A2A and A2B (ADORA2A and ADORA2B, respectively) play an important role in cardio-protection. Therefore, polymorphisms in the genes encoding those receptors may affect the risk and severity of CHF. This study was a case-control comparative investigation of 300 northern Chinese Han CHF patients and 400 ethnicity-matched healthy controls. Four common single-nucleotide polymorphisms (SNPs) of ADORA2A (rs2236625, rs2236624, rs4822489, and rs5751876) and one SNP of ADORA2B (rs7208480) were genotyped and an association between SNPs and clinical outcomes was evaluated. Odds ratios (ORs) with 95% confidence intervals (CIs) were used to assess the association. The rs4822489 was significantly associated with the severity of CHF after adjustment for traditional cardiovascular risk factors (p = 0.040, OR = 1.912, 95% CI = 1.029–3.550). However, the five SNPs as well as the haplotypes were not found to be associated with CHF susceptibility. The findings of this study suggest that rs4822489 may contribute to the severity of CHF in the northern Chinese. However, further studies performed in larger populations and aimed at better defining the role of this gene are required. Full article
(This article belongs to the collection Human Single Nucleotide Polymorphisms and Disease Diagnostics)
Open AccessReview Spectrum-Effect Relationships as a Systematic Approach to Traditional Chinese Medicine Research: Current Status and Future Perspectives
Molecules 2014, 19(11), 17897-17925; doi:10.3390/molecules191117897
Received: 5 September 2014 / Revised: 27 October 2014 / Accepted: 29 October 2014 / Published: 4 November 2014
Cited by 11 | Viewed by 1827 | PDF Full-text (491 KB) | HTML Full-text | XML Full-text
Abstract
Component fingerprints are a recognized method used worldwide to evaluate the quality of traditional Chinese medicines (TCMs). To foster the strengths and circumvent the weaknesses of the fingerprint technique in TCM, spectrum-effect relationships would complementarily clarify the nature of pharmacodynamic effects in the
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Component fingerprints are a recognized method used worldwide to evaluate the quality of traditional Chinese medicines (TCMs). To foster the strengths and circumvent the weaknesses of the fingerprint technique in TCM, spectrum-effect relationships would complementarily clarify the nature of pharmacodynamic effects in the practice of TCM. The application of the spectrum-effect relationship method is crucial for understanding and interpreting TCM development, especially in the view of the trends towards TCM modernization and standardization. The basic requirement for using this method is in-depth knowledge of the active material basis and mechanisms of action. It is a novel and effective approach to study TCMs and great progress has been made, but to make it more accurate for TCM research purposes, more efforts are needed. In this review, the authors summarize the current knowledge about the spectrum-effect relationship method, including the fingerprint methods, pharmacodynamics studies and the methods of establishing relationships between the fingerprints and pharmacodynamics. Some speculation regarding future perspectives for spectrum-effect relationship approaches in TCM modernization and standardization are also proposed. Full article
(This article belongs to the Section Natural Products)
Open AccessArticle Biotransformation and in Vitro Metabolic Profile of Bioactive Extracts from a Traditional Miao-Nationality Herbal Medicine, Polygonum capitatum
Molecules 2014, 19(7), 10291-10308; doi:10.3390/molecules190710291
Received: 23 May 2014 / Revised: 7 July 2014 / Accepted: 8 July 2014 / Published: 16 July 2014
Cited by 3 | Viewed by 1835 | PDF Full-text (1219 KB) | HTML Full-text | XML Full-text | Supplementary Files
Abstract
Polygonum capitatum Buch.-Ham.ex D. Don, a traditional Miao-nationality herbal medicine, has been widely used in the treatment of various urologic disorders. Recent pharmacological studies demonstrated that a pure compound, FR429, isolated from the ethanol extracts of P. capitatum could selectively inhibit the growth
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Polygonum capitatum Buch.-Ham.ex D. Don, a traditional Miao-nationality herbal medicine, has been widely used in the treatment of various urologic disorders. Recent pharmacological studies demonstrated that a pure compound, FR429, isolated from the ethanol extracts of P. capitatum could selectively inhibit the growth of four hepatocellular carcinoma (HCC) cell lines in a dose-dependent manner. Thus, P. capitatum probably exhibits potential antitumor activity. However, there is very little information on the metabolism of substances present in P. capitatum extracts. In this study, gallic acid, quercetrin, ethanol extracts and ethyl acetate fraction of ethnolic extract (EtOAc fraction) of P. capitatum were cultured anaerobically with rat intestinal bacteria. A highly sensitive and selective liquid chromatography electrospray ionization-ion trap-time of fight mass spectrometry (LC/MSn-IT-TOF) technique was employed to identify and characterize the resulting metabolites. A total of 22 metabolites (M1–M22), including tannins, phenolic acids and flavonoids, were detected and characterized. The overall results demonstrated that the intestinal bacteria played an important role in the metabolism of P. capitatum, and the main metabolic pathways were hydrolysis, reduction and oxidation reactions. Our results provided a basis for the estimation of the metabolic transformation of P. capitatum in vivo. Full article
(This article belongs to the Section Natural Products)
Open AccessArticle Radioprotective and Antioxidant Effect of Resveratrol in Hippocampus by Activating Sirt1
Int. J. Mol. Sci. 2014, 15(4), 5928-5939; doi:10.3390/ijms15045928
Received: 25 January 2014 / Revised: 24 February 2014 / Accepted: 28 March 2014 / Published: 9 April 2014
Cited by 26 | Viewed by 2136 | PDF Full-text (816 KB) | HTML Full-text | XML Full-text
Abstract
Reactive oxygen species can lead to functional alterations in lipids, proteins, and nucleic acids, and an accumulation of ROS (Reactive oxygen species) is considered to be one factor that contributes to neurodegenerative changes. An increase in ROS production occurs following irradiation. Neuronal tissue
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Reactive oxygen species can lead to functional alterations in lipids, proteins, and nucleic acids, and an accumulation of ROS (Reactive oxygen species) is considered to be one factor that contributes to neurodegenerative changes. An increase in ROS production occurs following irradiation. Neuronal tissue is susceptible to oxidative stress because of its high oxygen consumption and modest antioxidant defenses. As a polyphenolic compound, resveratrol is frequently used as an activator of Sirt1 (Sirtuin 1). The present study was designed to explore the radioprotective and antioxidant effect of resveratrol on Sirt1 expression and activity induced by radiation and to provide a new target for the development of radiation protection drugs. Our results demonstrate that resveratrol inhibits apoptosis induced by radiation via the activation of Sirt1. We demonstrated an increase in Sirt1 mRNA that was present on 21 days of resveratrol treatment following irradiation in a concentration-dependent manner. Such mRNA increase was accompanied by an increase of Sirt1 protein and activity. Resveratrol effectively antagonized oxidation induced by irradiation, supporting its cellular ROS-scavenging effect. These results provide evidence that the mitochondrial protection and the antioxidant effect of resveratrol contribute to metabolic activity. These data suggest that Sirt1 may play an important role to protect neurons from oxidative stress. Full article
(This article belongs to the Section Biochemistry, Molecular and Cellular Biology)
Open AccessArticle Germacranes and m-Menthane from Illicium lanceolatum
Molecules 2014, 19(4), 4326-4337; doi:10.3390/molecules19044326
Received: 15 March 2014 / Revised: 27 March 2014 / Accepted: 28 March 2014 / Published: 4 April 2014
Viewed by 1925 | PDF Full-text (332 KB) | HTML Full-text | XML Full-text | Supplementary Files
Abstract
Three new germacrane sesquiterpenes and a new m-menthane monoterpene were isolated together with four known compounds from the pericarp of Illicium lanceolatum, an adulterant to star anise (Illicium verum). All compounds were isolated from Illicium plants for the first
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Three new germacrane sesquiterpenes and a new m-menthane monoterpene were isolated together with four known compounds from the pericarp of Illicium lanceolatum, an adulterant to star anise (Illicium verum). All compounds were isolated from Illicium plants for the first time. The absolute stereochemistry of all germacranes and m-menthane was established by a combination of NMR and the modified Mosher’s ester method. The biological activity was evaluated on SH-SY5Y neuroblastoma cell line. (1S,5R,7R)-1,5-Dihydroxygermacra-4(15),10(14),11(12)-triene (at 62.5 µM) and (1R,5R,7R)-1,5-dihydroxygermacra-4(15),10(14),11(12)-triene (at 15.6 µM) promoted the proliferation of SH-SY5Y by 36.2% and 45.8%, respectively, after 48 h incubation, indicating potential neurotrophic activity. Full article
(This article belongs to the Section Natural Products)
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Open AccessArticle shRNA-Mediated XRCC2 Gene Knockdown Efficiently Sensitizes Colon Tumor Cells to X-ray Irradiation in Vitro and in Vivo
Int. J. Mol. Sci. 2014, 15(2), 2157-2171; doi:10.3390/ijms15022157
Received: 18 November 2013 / Revised: 30 December 2013 / Accepted: 16 January 2014 / Published: 29 January 2014
Cited by 3 | Viewed by 2538 | PDF Full-text (503 KB) | HTML Full-text | XML Full-text
Abstract
Colon cancer is one of the most common tumors of the digestive tract. Resistance to ionizing radiation (IR) decreased therapeutic efficiency in these patients’ radiotherapy. XRCC2 is the key protein of DNA homologous recombination repair, and its high expression is associated with enhanced
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Colon cancer is one of the most common tumors of the digestive tract. Resistance to ionizing radiation (IR) decreased therapeutic efficiency in these patients’ radiotherapy. XRCC2 is the key protein of DNA homologous recombination repair, and its high expression is associated with enhanced resistance to DNA damage induced by IR. Here, we investigated the effect of XRCC2 silencing on colon tumor cells’ growth and sensitivity to X-radiation in vitro and in vivo. Colon tumor cells (T84 cell line) were cultivated in vitro and tumors originated from the cell line were propagated as xenografts in nude mice. The suppression of XRCC2 expression was achieved by using vector-based short hairpin RNA (shRNA) in T84 cells. We found that the knockdown of XRCC2 expression effectively decreased T84 cellular proliferation and colony formation, and led to cell apoptosis and cell cycle arrested in G2/M phase induced by X-radiation in vitro. In addition, tumor xenograft studies suggested that XRCC2 silencing inhibited tumorigenicity after radiation treatment in vivo. Our data suggest that the suppression of XRCC2 expression rendered colon tumor cells more sensitive to radiation therapy in vitro and in vivo, implying XRCC2 as a promising therapeutic target for the treatment of radioresistant human colon cancer. Full article
(This article belongs to the collection Radiation Toxicity in Cells)
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Open AccessArticle Radiation-Sensitising Effects of Antennapedia Proteins (ANTP)-SmacN7 on Tumour Cells
Int. J. Mol. Sci. 2013, 14(12), 24087-24096; doi:10.3390/ijms141224087
Received: 8 October 2013 / Revised: 19 November 2013 / Accepted: 2 December 2013 / Published: 11 December 2013
Cited by 3 | Viewed by 1618 | PDF Full-text (756 KB) | HTML Full-text | XML Full-text
Abstract
The objective of this study was to investigate the underlying mechanisms behind the radiation-sensitising effects of the antennapedia proteins (ANTP)-smacN7 fusion protein on tumour cells. ANTP-SmacN7 fusion proteins were synthesised, and the ability of this fusion protein to penetrate cells was observed. Effects
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The objective of this study was to investigate the underlying mechanisms behind the radiation-sensitising effects of the antennapedia proteins (ANTP)-smacN7 fusion protein on tumour cells. ANTP-SmacN7 fusion proteins were synthesised, and the ability of this fusion protein to penetrate cells was observed. Effects of radiation on the expression of X-linked inhibitor of apoptosis protein (XIAP) were detected by western blotting. The radiation-sensitising effects of ANTP-SmacN7 fusion proteins were observed by a clonogenic assay. The effects of drugs and radiation on tumour cell apoptosis were determined using Annexin V/FITC double staining. Changes in caspase-8, caspase-9 and caspase-3 were detected by western blot before and after ANTP-SmacN7 inhibition of XIAP. The ANTP-SmacN7 fusion protein could enter and accumulate in cells; in vitro XIAP expression of radiation-induced tumour cells was negatively correlated with tumour radiosensitivity. The ANTP-SmacN7 fusion protein promoted tumour cell apoptosis through the activation of caspase3. ANTP-SmacN7 fusion protein may reduce tumour cell radioresistance by inducing caspase3 activation. Full article
(This article belongs to the Special Issue Molecular Bases of Cancer Research)
Open AccessArticle Three New Ursane-Type Triterpenoids from the Stems of Saprosma merrillii
Molecules 2013, 18(12), 14496-14504; doi:10.3390/molecules181214496
Received: 25 September 2013 / Revised: 13 November 2013 / Accepted: 14 November 2013 / Published: 25 November 2013
Cited by 6 | Viewed by 1717 | PDF Full-text (330 KB) | HTML Full-text | XML Full-text | Correction
Abstract
Three new ursane-type triterpenoids, 3α,6α,30-trihydroxy-ursan-28-oic acid (1), 3α,30-dihydroxy-6-oxo-ursan-28-oic acid (2) and 3α,6α,7α,30-tetrahydroxy-ursan-28-oic acid (3), together with one known triterpenoid, betulinic acid (4), one
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Three new ursane-type triterpenoids, 3α,6α,30-trihydroxy-ursan-28-oic acid (1), 3α,30-dihydroxy-6-oxo-ursan-28-oic acid (2) and 3α,6α,7α,30-tetrahydroxy-ursan-28-oic acid (3), together with one known triterpenoid, betulinic acid (4), one known anthraquinone, 1,7-dihydroxy-2-methylanthraquinone (5), four known phenols, 1,3,5-trimethoxybenzene (6), p-hydroxybenzoic acid (7), syringic acid (8), isovanillin (9), two steroids, sitosterol (10) and daucosterol (11), were isolated from the ethanol extract of the stems of S. merrillii. Their structures were elucidated on the basis of physical and spectral techniques, besides comparison with literature data. Compounds 13 showed inhibitory activities against the A549, HEPG2, and B16F10 cell lines. Full article
(This article belongs to the Section Natural Products)
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Open AccessArticle Evaluation of the Comet Assay for Assessing the Dose-Response Relationship of DNA Damage Induced by Ionizing Radiation
Int. J. Mol. Sci. 2013, 14(11), 22449-22461; doi:10.3390/ijms141122449
Received: 4 September 2013 / Revised: 25 October 2013 / Accepted: 30 October 2013 / Published: 14 November 2013
Cited by 6 | Viewed by 2228 | PDF Full-text (801 KB) | HTML Full-text | XML Full-text
Abstract
Dose- and time-response curves were combined to assess the potential of the comet assay in radiation biodosimetry. The neutral comet assay was used to detect DNA double-strand breaks in lymphocytes caused by γ-ray irradiation. A clear dose-response relationship with DNA double-strand breaks using
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Dose- and time-response curves were combined to assess the potential of the comet assay in radiation biodosimetry. The neutral comet assay was used to detect DNA double-strand breaks in lymphocytes caused by γ-ray irradiation. A clear dose-response relationship with DNA double-strand breaks using the comet assay was found at different times after irradiation (p < 0.001). A time-response relationship was also found within 72 h after irradiation (p < 0.001). The curves for DNA double-strand breaks and DNA repair in vitro of human lymphocytes presented a nice model, and a smooth, three-dimensional plane model was obtained when the two curves were combined. Full article
(This article belongs to the collection Radiation Toxicity in Cells)
Open AccessArticle Cytogenetic Abnormalities in Lymphocytes from Victims Exposed to Cobalt-60 Radiation
Int. J. Mol. Sci. 2013, 14(9), 17525-17535; doi:10.3390/ijms140917525
Received: 24 June 2013 / Revised: 14 August 2013 / Accepted: 21 August 2013 / Published: 27 August 2013
Cited by 2 | Viewed by 2626 | PDF Full-text (266 KB) | HTML Full-text | XML Full-text
Abstract
The present study investigates cytogenetic damage in lymphocytes, derived from three victims who were unfortunately exposed to cobalt-60 (60Co) radiation (the 1999 accident occurred in a village in China’s Henan province). Case A of the three victims was exposed to a
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The present study investigates cytogenetic damage in lymphocytes, derived from three victims who were unfortunately exposed to cobalt-60 (60Co) radiation (the 1999 accident occurred in a village in China’s Henan province). Case A of the three victims was exposed to a higher dose of 60Co radiation than Cases B and C. The chromosomal aberrations, cytokinesis-block micronucleus (CBMN, the CBMN assay), and DNA double-strand breaks (DSBs, the comet assay) examined in this study are biomarkers for cytogenetic abnormalities. After the lymphocytes collected from the victims were cultured, the frequencies of dicentric chromosomes and rings (dic + r) and CBMN in the first mitotic division detected in the lymphocytes of Case A were found to be substantially higher than in Cases B and C. Similarly, the DNA-DSB level found in the peripheral blood collected from Case A was much higher than those of Cases B and C. These results suggest that an acutely enhanced induction of the 60Co-induced cytogenetic abnormality frequency in humans depends on the dose of 60Co radiation. This finding is supported by the data obtained using practical techniques to evaluate early lymphoid-tissue abnormalities induced after exposure to acute radiation. Full article
(This article belongs to the collection Radiation Toxicity in Cells)
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Open AccessArticle Resilient Minimum Entropy Filter Design for Non-Gaussian Stochastic Systems
Entropy 2013, 15(4), 1311-1323; doi:10.3390/e15041311
Received: 1 March 2013 / Revised: 27 March 2013 / Accepted: 2 April 2013 / Published: 10 April 2013
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Abstract
In this paper, the resilient minimum entropy filter problem is investigated for the stochastic systems with non-Gaussian disturbances. The goal of designing the filter is to guarantee that the entropy of the estimation error is monotonically decreasing, moreover, the error system is exponentially
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In this paper, the resilient minimum entropy filter problem is investigated for the stochastic systems with non-Gaussian disturbances. The goal of designing the filter is to guarantee that the entropy of the estimation error is monotonically decreasing, moreover, the error system is exponentially ultimately bounded in the mean square. Based on the entropy performance function, a filter gain updating algorithm is presented to make the entropy decrease at every sampling instant k. Then the boundedness of the gain updating law is analyzed using the kernel density estimation technique. Furthermore, a suboptimal resilient filter gain is designed in terms of LMI. Finally, a simulation example is given to show the effectiveness of the proposed results. Full article
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Open AccessCorrection Correction: Liang, J., et al. Antisense Oligonucleotide Against Clusterin Regulates Human Hepatocellular Carcinoma Invasion Through Transcriptional Regulation of Matrix Metalloproteinase-2 and E-Cadherin. Int. J. Mol. Sci. 2012, 13, 10594-10607
Int. J. Mol. Sci. 2013, 14(3), 6516-6517; doi:10.3390/ijms14036516
Received: 19 March 2013 / Revised: 20 March 2013 / Accepted: 20 March 2013 / Published: 22 March 2013
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Abstract
The original version of the paper reports that “OGX-011 is a second generation 21-mer oligonucleotide with a 20-O-(2-methoxy)-ethyl modification, generously provided by OncoGenex Technologies (OncoGenex, Vancouver, Canada)” [1] (p. 10602). OGX-011 was not provided by OncoGenex Technologies directly. Therefore, we would
[...] Read more.
The original version of the paper reports that “OGX-011 is a second generation 21-mer oligonucleotide with a 20-O-(2-methoxy)-ethyl modification, generously provided by OncoGenex Technologies (OncoGenex, Vancouver, Canada)” [1] (p. 10602). OGX-011 was not provided by OncoGenex Technologies directly. Therefore, we would like to correct the wording to: “OGX-011 was obtained without the benefit of an agreement with OncoGenex, or The University British Columbia, or any other party”. The authors would like to apologize for any inconvenience this may have caused to the readers of this journal. [...] Full article
Open AccessArticle The Role of Slingshot-1L (SSH1L) in the Differentiation of Human Bone Marrow Mesenchymal Stem Cells into Cardiomyocyte-Like Cells
Molecules 2012, 17(12), 14975-14994; doi:10.3390/molecules171214975
Received: 7 November 2012 / Revised: 11 December 2012 / Accepted: 12 December 2012 / Published: 17 December 2012
Cited by 10 | Viewed by 2475 | PDF Full-text (1111 KB)
Abstract
Adult cardiomyocytes (CMs) have very limited capacity to regenerate. Therefore, there is a great interest in developing strategies to treat infarcted CMs that are able to regenerate cardiac tissue and promote revascularization of infarcted zones in the heart. Recently, stem cell transplantation has
[...] Read more.
Adult cardiomyocytes (CMs) have very limited capacity to regenerate. Therefore, there is a great interest in developing strategies to treat infarcted CMs that are able to regenerate cardiac tissue and promote revascularization of infarcted zones in the heart. Recently, stem cell transplantation has been proposed to replace infarcted CMs and to restore the function of the affected tissue. This area of research has become very active in recent years due to the huge clinical need to improve the efficacy of currently available therapies. Slingshot (SSH) is a family of protein phosphatases, which can specifically dephosphorylate and reactivate cofilin and inhibit the polymerization of actin filaments and actively involved in cytoskeleton rearrangement. In this study, we found that SSH1L promoted morphology changes of microfilaments during differentiation but was inhibited by the inhibitors of actin polymerization such as cytochalasin D. Overexpression of SSH1L could promote cardiac-specific protein and genes expression. 5-Aza can induce the differentiation of hMSCs into cardiomyocyte-like cells in vitro. We also observed that SSH1L efficiently promotes hMSCs differentiation into cardiomyocyte-like cells through regulation and rearrangement of cytoskeleton. Our work provides evidence that supports the positive role of SSH1L in the mechanism of stem cell differentiation into cardiomyocyte-like cells. Full article
Open AccessArticle Antisense Oligonucleotide Against Clusterin Regulates Human Hepatocellular Carcinoma Invasion Through Transcriptional Regulation of Matrix Metalloproteinase-2 and E-Cadherin
Int. J. Mol. Sci. 2012, 13(8), 10594-10607; doi:10.3390/ijms130810594
Received: 21 June 2012 / Revised: 10 August 2012 / Accepted: 20 August 2012 / Published: 23 August 2012
Cited by 13 | Viewed by 2133 | PDF Full-text (444 KB) | HTML Full-text | XML Full-text | Correction | Supplementary Files
Abstract
Secreted clusterin (sCLU) has been shown to be overexpressed in metastatic hepatocellular carcinoma (HCC) tissue, and its overexpression in HCC cells increases cell migration and the formation of liver metastatic tumor nodules in vivo. In this study, we tested the hypothesis that
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Secreted clusterin (sCLU) has been shown to be overexpressed in metastatic hepatocellular carcinoma (HCC) tissue, and its overexpression in HCC cells increases cell migration and the formation of liver metastatic tumor nodules in vivo. In this study, we tested the hypothesis that sCLU plays a role in the invasiveness of human HCC and may be associated with its metastatic spread. HCCLM3, a human hepatocellular carcinoma cell line, was transiently transfected with an antisense oligonucleotide (ASO) against sCLU (OGX-011). HepG2 liver hepatocellular cells were transiently transfected with the pc.DNA3.1-sCLU plasmid to overexpress sCLU, and subsequently evaluated for effects on invasion and the expression of molecules involved in invasion. We observed that suppression of the sCLU gene significantly reduced the invasive capability of the highly invasive HCCLM3 cells, and vice versa in the low invasive HepG2 cell line. The results revealed that knockdown of sCLU by OGX-011 resulted in a significant increase in the expression of E-cadherin and a decrease in matrix metalloproteinase-2 (MMP-2) gene transcription. Overexpression of sCLU by transfection with pc.DNA3.1-sCLU significantly decreased the expression of E-cadherin and increased MMP-2 gene transcription. These data were further verified by reverse transcription-PCR and Western blot analysis. A significant reduction in MMP-2 expression and an increase in E-cadherin expression in sCLU-knockdown HCCLM3 cells were observed, as well as a significant increase in MMP-2 expression and a decrease in E-cadherin expression in HepG2 cells overexpressing sCLU. These data indicate a role for sCLU in augmenting MMP-2 transcription and decreasing E-cadherin expression. Our data show the involvement of sCLU in human HCC invasion, and demonstrate that silencing sCLU gene expression inhibits the invasion of human HCC cells by inhibiting MMP-2 expression and promoting E-cadherin expression. Thus, OGX-011 could be an effective therapeutic agent for HCC. Full article
(This article belongs to the Special Issue Molecular Mechanisms of Organ-Specific Toxicity)
Open AccessArticle Simultaneous and Rapid Determination of Main Lignans in Different Parts of Schisandra Sphenanthera by Micellar Electrokinetic Capillary Chromatography
Molecules 2011, 16(5), 3713-3722; doi:10.3390/molecules16053713
Received: 7 April 2011 / Revised: 25 April 2011 / Accepted: 26 April 2011 / Published: 3 May 2011
Cited by 8 | Viewed by 5639 | PDF Full-text (115 KB)
Abstract
Lignans are imporant active ingredients of Schisandra sphenanthera. A micellar electrokinetic chromatography method was developed for the simultaneous determination of eight lignans – schizandrin, schisandrol B, schisantherin A, schisanhenol, anwulignan, deoxyschizandrin, schizandrin B and schizandrin C – in different parts of
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Lignans are imporant active ingredients of Schisandra sphenanthera. A micellar electrokinetic chromatography method was developed for the simultaneous determination of eight lignans – schizandrin, schisandrol B, schisantherin A, schisanhenol, anwulignan, deoxyschizandrin, schizandrin B and schizandrin C – in different parts of S. sphenanthera. The key factors for separation and determination were studied and the best analysis conditions were obtained using a background electrolyte of 10 mM phosphate-37.5 mM SDS-35% v/v acetonitrile (pH 8.0) at the separation voltage of 28 kV and detection at 214 nm, whereby the plant samples could be analyzed within 9.0 min. Analysis yielded good reproducibility (RSD between 1.19-2.28%) and good recovery (between 92.2-103.8%). The detection limits (LOD) and limit of quantification (LOQ) were within 0.4-1.2 mg/L and 1.5-4.0 mg/L. This method is promising to improve the quality control of different parts of S. sphenanthera. Full article

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