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Authors = Hideki Kobayashi

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Open AccessArticle Polymer Conformations in Ionic Microgels in the Presence of Salt: Theoretical and Mesoscale Simulation Results
Polymers 2017, 9(1), 15; doi:10.3390/polym9010015
Received: 21 November 2016 / Revised: 22 December 2016 / Accepted: 29 December 2016 / Published: 5 January 2017
Cited by 1 | Viewed by 643 | PDF Full-text (1109 KB) | HTML Full-text | XML Full-text
Abstract
We investigate the conformational properties of polymers in ionic microgels in the presence of salt ions by molecular dynamics simulations and analytical theory. A microgel particle consists of coarse-grained linear polymers, which are tetra-functionally crosslinked. Counterions and salt ions are taken into account
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We investigate the conformational properties of polymers in ionic microgels in the presence of salt ions by molecular dynamics simulations and analytical theory. A microgel particle consists of coarse-grained linear polymers, which are tetra-functionally crosslinked. Counterions and salt ions are taken into account explicitly, and charge-charge interactions are described by the Coulomb potential. By varying the charge interaction strength and salt concentration, we characterize the swelling of the polyelectrolytes and the charge distribution. In particular, we determine the amount of trapped mobile charges inside the microgel and the Debye screening length. Moreover, we analyze the polymer extension theoretically in terms of the tension blob model taking into account counterions and salt ions implicitly by the Debye–Hückel model. Our studies reveal a strong dependence of the amount of ions absorbed in the interior of the microgel on the electrostatic interaction strength, which is related to the degree of the gel swelling. This implies a dependence of the inverse Debye screening length κ on the ion concentration; we find a power-law increase of κ with the Coulomb interaction strength with the exponent 3 / 5 for a salt-free microgel and an exponent 1 / 2 for moderate salt concentrations. Additionally, the radial dependence of polymer conformations and ion distributions is addressed. Full article
(This article belongs to the collection Polyelectrolytes)
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Open AccessArticle Global Surface Net-Radiation at 5 km from MODIS Terra
Remote Sens. 2016, 8(9), 739; doi:10.3390/rs8090739
Received: 20 April 2016 / Revised: 17 August 2016 / Accepted: 23 August 2016 / Published: 6 September 2016
Cited by 1 | Viewed by 1181 | PDF Full-text (9343 KB) | HTML Full-text | XML Full-text | Supplementary Files
Abstract
Reliable and fine resolution estimates of surface net-radiation are required for estimating latent and sensible heat fluxes between the land surface and the atmosphere. However, currently, fine resolution estimates of net-radiation are not available and consequently it is challenging to develop multi-year estimates
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Reliable and fine resolution estimates of surface net-radiation are required for estimating latent and sensible heat fluxes between the land surface and the atmosphere. However, currently, fine resolution estimates of net-radiation are not available and consequently it is challenging to develop multi-year estimates of evapotranspiration at scales that can capture land surface heterogeneity and are relevant for policy and decision-making. We developed and evaluated a global net-radiation product at 5 km and 8-day resolution by combining mutually consistent atmosphere and land data from the Moderate Resolution Imaging Spectroradiometer (MODIS) on board Terra. Comparison with net-radiation measurements from 154 globally distributed sites (414 site-years) from the FLUXNET and Surface Radiation budget network (SURFRAD) showed that the net-radiation product agreed well with measurements across seasons and climate types in the extratropics (Wilmott’s index ranged from 0.74 for boreal to 0.63 for Mediterranean sites). Mean absolute deviation between the MODIS and measured net-radiation ranged from 38.0 ± 1.8 W∙m−2 in boreal to 72.0 ± 4.1 W∙m−2 in the tropical climates. The mean bias was small and constituted only 11%, 0.7%, 8.4%, 4.2%, 13.3%, and 5.4% of the mean absolute error in daytime net-radiation in boreal, Mediterranean, temperate-continental, temperate, semi-arid, and tropical climate, respectively. To assess the accuracy of the broader spatiotemporal patterns, we upscaled error-quantified MODIS net-radiation and compared it with the net-radiation estimates from the coarse spatial (1° × 1°) but high temporal resolution gridded net-radiation product from the Clouds and Earth’s Radiant Energy System (CERES). Our estimates agreed closely with the net-radiation estimates from the CERES. Difference between the two was less than 10 W·m−2 in 94% of the total land area. MODIS net-radiation product will be a valuable resource for the science community studying turbulent fluxes and energy budget at the Earth’s surface. Full article
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Open AccessArticle A Simple Method for Retrieving Understory NDVI in Sparse Needleleaf Forests in Alaska Using MODIS BRDF Data
Remote Sens. 2014, 6(12), 11936-11955; doi:10.3390/rs61211936
Received: 26 June 2014 / Revised: 15 November 2014 / Accepted: 17 November 2014 / Published: 1 December 2014
Cited by 6 | Viewed by 1552 | PDF Full-text (6515 KB) | HTML Full-text | XML Full-text
Abstract
Global products of leaf area index (LAI) usually show large uncertainties in sparsely vegetated areas because the understory contribution is not negligible in reflectance modeling for the case of low to intermediate canopy cover. Therefore, many efforts have been made to include understory
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Global products of leaf area index (LAI) usually show large uncertainties in sparsely vegetated areas because the understory contribution is not negligible in reflectance modeling for the case of low to intermediate canopy cover. Therefore, many efforts have been made to include understory properties in LAI estimation algorithms. Compared with the conventional data bank method, estimation of forest understory properties from satellite data is superior in studies at a global or continental scale over long periods. However, implementation of the current remote sensing method based on multi-angular observations is complicated. As an alternative, a simple method to retrieve understory NDVI (NDVIu) for sparse boreal forests was proposed in this study. The method is based on the fact that the bidirectional variation in NDVIu is smaller than that in canopy-level NDVI. To retrieve NDVIu for a certain pixel, linear extrapolation was applied using pixels within a 5 × 5 target-pixel-centered window. The NDVI values were reconstructed from the MODIS BRDF data corresponding to eight different solar-view angles. NDVIu was estimated as the average of the NDVI values corresponding to the position in which the stand NDVI had the smallest angular variation. Validation by a noise-free simulation data set yielded high agreement between estimated and true NDVIu, with R2 and RMSE of 0.99 and 0.03, respectively. Using the MODIS BRDF data, we achieved an estimate of NDVIu close to the in situ measured value (0.61 vs. 0.66 for estimate and measurement, respectively) and reasonable seasonal patterns of NDVIu in 2010 to 2013. The results imply a potential application of the retrieved NDVIu to improve the estimation of overstory LAI for sparse boreal forests and ultimately to benefit studies on carbon cycle modeling over high-latitude areas. Full article
(This article belongs to the Special Issue Remote Sensing of Changing Northern High Latitude Ecosystems)
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Open AccessArticle Structure of Microgels with Debye–Hückel Interactions
Polymers 2014, 6(5), 1602-1617; doi:10.3390/polym6051602
Received: 31 March 2014 / Revised: 13 May 2014 / Accepted: 19 May 2014 / Published: 23 May 2014
Cited by 18 | Viewed by 2201 | PDF Full-text (1089 KB) | HTML Full-text | XML Full-text
Abstract
The structural properties of model microgel particles are investigated by molecular dynamics simulations applying a coarse-grained model. A microgel is comprised of a regular network of polymers internally connected by tetra-functional cross-links and with dangling ends at its surface. The self-avoiding polymers are
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The structural properties of model microgel particles are investigated by molecular dynamics simulations applying a coarse-grained model. A microgel is comprised of a regular network of polymers internally connected by tetra-functional cross-links and with dangling ends at its surface. The self-avoiding polymers are modeled as bead-spring linear chains. Electrostatic interactions are taken into account by the Debye–Hückel potential. The microgels exhibit a quite uniform density under bad solvent conditions with a rather sharp surface. With increasing Debye length, structural inhomogeneities appear, their surface becomes fuzzy and, at very large Debye lengths, well defined again. Similarly, the polymer conformations change from a self-avoiding walk to a rod-like behavior. Thereby, the average polymer radius of gyration follows a scaling curve in terms of polymer length and persistence length, with an asymptotic rod-like behavior for swollen microgels and self-avoiding walk behavior for weakly swollen gel particles. Full article
(This article belongs to the Special Issue Polyelectrolytes 2014)
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Open AccessArticle Yeast Irc22 Is a Novel Dsk2-Interacting Protein that Is Involved in Salt Tolerance
Cells 2014, 3(2), 180-198; doi:10.3390/cells3020180
Received: 28 January 2014 / Revised: 14 March 2014 / Accepted: 15 March 2014 / Published: 27 March 2014
Cited by 1 | Viewed by 2326 | PDF Full-text (2690 KB) | HTML Full-text | XML Full-text | Supplementary Files
Abstract
The yeast ubiquitin-like and ubiquitin-associated protein Dsk2 is one of the ubiquitin receptors that function in the ubiquitin-proteasome pathway. We screened the Dsk2-interacting proteins in Saccharomyces cerevisiae by a two-hybrid assay and identified a novel Dsk2-interacting protein, Irc22, the gene locus of which
[...] Read more.
The yeast ubiquitin-like and ubiquitin-associated protein Dsk2 is one of the ubiquitin receptors that function in the ubiquitin-proteasome pathway. We screened the Dsk2-interacting proteins in Saccharomyces cerevisiae by a two-hybrid assay and identified a novel Dsk2-interacting protein, Irc22, the gene locus of which has previously been described as YEL001C, but the function of which is unknown. IRC22/YEL001C encodes 225 amino acid residues with a calculated molecular weight of 25 kDa. The Irc22 protein was detected in yeast cells. IRC22 was a nonessential gene for yeast growth, and its homologs were found among ascomycetous yeasts. Irc22 interacted with Dsk2 in yeast cells, but not with Rad23 and Ddi1. Ubiquitin-dependent degradation was impaired mildly by over-expression or disruption of IRC22. Compared with the wild-type strain, dsk2D exhibited salt sensitivity while irc22D exhibited salt tolerance at high temperatures. The salt-tolerant phenotype that was observed in irc22D disappeared in the dsk2Dirc22D double disruptant, indicating that DSK2 is positively and IRC22 is negatively involved in salt stress tolerance. IRC22 disruption did not affect any responses to DNA damage and oxidative stress when comparing the irc22D and wild-type strains. Collectively, these results suggest that Dsk2 and Irc22 are involved in salt stress tolerance in yeast. Full article
(This article belongs to the Special Issue Protein Ubiquitination)
Open AccessArticle Recent Changes in Terrestrial Gross Primary Productivity in Asia from 1982 to 2011
Remote Sens. 2013, 5(11), 6043-6062; doi:10.3390/rs5116043
Received: 30 September 2013 / Revised: 25 October 2013 / Accepted: 11 November 2013 / Published: 15 November 2013
Cited by 12 | Viewed by 5797 | PDF Full-text (1064 KB) | HTML Full-text | XML Full-text
Abstract
Past changes in gross primary productivity (GPP) were assessed using historical satellite observations based on the Normalized Difference Vegetation Index (NDVI) from the Advanced Very High Resolution Radiometer (AVHRR) onboard the National Oceanic and Atmospheric Administration (NOAA) satellite series and four terrestrial biosphere
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Past changes in gross primary productivity (GPP) were assessed using historical satellite observations based on the Normalized Difference Vegetation Index (NDVI) from the Advanced Very High Resolution Radiometer (AVHRR) onboard the National Oceanic and Atmospheric Administration (NOAA) satellite series and four terrestrial biosphere models to identify the trends and driving mechanisms related to GPP and NDVI in Asia. A satellite-based time-series data analysis showed that approximately 40% of the area has experienced a significant increase in the NDVI, while only a few areas have experienced a significant decreasing trend over the last 30 years. The increases in the NDVI are dominant in the sub-continental regions of Siberia, East Asia, and India. Simulations using the terrestrial biosphere models also showed significant increases in GPP, similar to the results for the NDVI, in boreal and temperate regions. A modeled sensitivity analysis showed that the increases in GPP are explained by increased temperature and precipitation in Siberia. Precipitation, solar radiation and CO2 fertilization are important factors in the tropical regions. However, the relative contributions of each factor to GPP changes are different among the models. Full article
(This article belongs to the Special Issue Monitoring Global Vegetation with AVHRR NDVI3g Data (1981-2011))
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Open AccessArticle Enhancing Meso Level Research in Sustainability Science—Challenges and Research Needs
Sustainability 2012, 4(8), 1833-1847; doi:10.3390/su4081833
Received: 8 June 2012 / Revised: 23 July 2012 / Accepted: 30 July 2012 / Published: 15 August 2012
Cited by 3 | Viewed by 2197 | PDF Full-text (685 KB) | HTML Full-text | XML Full-text
Abstract
Growing numbers of promising visions of the future and scenarios that may lead toward building sustainable societies are being developed. At the same time, advanced technologies and research seeds that could increase the likelihood of achieving such visions are also being rigorously conceived.
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Growing numbers of promising visions of the future and scenarios that may lead toward building sustainable societies are being developed. At the same time, advanced technologies and research seeds that could increase the likelihood of achieving such visions are also being rigorously conceived. Even so, we face challenges and barriers in achieving these visions due to large gaps between individual technology seeds and shared visions. In this paper we propose a “vision-meso-seeds” model as a practical framework for addressing sustainability transition and demonstrate meso level research whose primary aim is to design a matching of promising seeds at the micro level and societal visions at the macro level, facilitating an achievement of the set visions with quantified targets. In particular we highlight the importance of matching various strategies and measures derived from the top-down (vision-oriented) approach and bottom-up (seeds-oriented) approach in the meso level research. We argue that the meso level research shall constitute one of the emerging core fields in sustainability science and suggest that accumulation of knowledge through case studies be needed to enhance and verify theory, specific methods and approach necessary for advancing the meso level research in the context of sustainability science. Full article
Open AccessArticle An R&D Management Framework for Eco-Technology
Sustainability 2011, 3(8), 1282-1301; doi:10.3390/su3081282
Received: 28 April 2011 / Revised: 14 July 2011 / Accepted: 16 August 2011 / Published: 24 August 2011
Cited by 5 | Viewed by 3539 | PDF Full-text (430 KB) | HTML Full-text | XML Full-text
Abstract
Although research and development (R&D) affects new value-added creation, including that related to environmental aspects, there is little literature dealing with the integration of R&D management and eco-value. Here, eco-value of technology is defined as the advantage of environmental competitiveness in the market.
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Although research and development (R&D) affects new value-added creation, including that related to environmental aspects, there is little literature dealing with the integration of R&D management and eco-value. Here, eco-value of technology is defined as the advantage of environmental competitiveness in the market. This paper proposes a framework of R&D management of eco-technology (RDMOET), consisting of: (1) future research for sustainability; (2) making an original eco-theme portfolio and roadmap; (3) gap analysis and implementation of new eco-themes; and (4) eco-value evaluation. (1) and (4) are new processes compared with conventional R&D management. Through practice at the Corporate R&D Center of Toshiba Corporation, the usefulness of the proposed framework is verified from the viewpoint of not only technological eco-innovation, but also that of organizational learning for environmental sustainability. Full article
(This article belongs to the Special Issue Innovation and Environmental Sustainability)
Open AccessReview Emerging Families of Ion Channels Involved in Urinary Bladder Nociception
Pharmaceuticals 2010, 3(7), 2248-2267; doi:10.3390/ph3072248
Received: 17 May 2010 / Revised: 28 June 2010 / Accepted: 15 July 2010 / Published: 19 July 2010
Cited by 4 | Viewed by 4496 | PDF Full-text (203 KB) | HTML Full-text | XML Full-text
Abstract
The expression of multiple ion channels and receptors is essential for nociceptors to detect noxious stimuli of a thermal, mechanical or chemical nature. The peripheral sensory transduction systems of the urinary bladder include sensory nerve endings, urothelial cells and others whose location is
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The expression of multiple ion channels and receptors is essential for nociceptors to detect noxious stimuli of a thermal, mechanical or chemical nature. The peripheral sensory transduction systems of the urinary bladder include sensory nerve endings, urothelial cells and others whose location is suitable for transducing mechanical and chemical stimuli. There is an increasing body of evidence implicating the Deg/ENaC and TRP channel families in the control of bladder afferent excitability under physiological and pathological conditions. Pharmacological interventions targeting these ion channels may provide a new strategy for the treatment of pathological bladder sensation and pain. Full article
(This article belongs to the Special Issue Ion Channels as Therapeutic Targets for Pain)
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