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Authors = Alessandro Cuomo

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Open AccessReview Mass Spectrometry-Based Proteomics for the Analysis of Chromatin Structure and Dynamics
Int. J. Mol. Sci. 2013, 14(3), 5402-5431; doi:10.3390/ijms14035402
Received: 7 November 2012 / Revised: 24 January 2013 / Accepted: 20 February 2013 / Published: 6 March 2013
Cited by 20 | Viewed by 2800 | PDF Full-text (539 KB) | HTML Full-text | XML Full-text
Abstract
Chromatin is a highly structured nucleoprotein complex made of histone proteins and DNA that controls nearly all DNA-dependent processes. Chromatin plasticity is regulated by different associated proteins, post-translational modifications on histones (hPTMs) and DNA methylation, which act in a concerted manner to enforce
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Chromatin is a highly structured nucleoprotein complex made of histone proteins and DNA that controls nearly all DNA-dependent processes. Chromatin plasticity is regulated by different associated proteins, post-translational modifications on histones (hPTMs) and DNA methylation, which act in a concerted manner to enforce a specific “chromatin landscape”, with a regulatory effect on gene expression. Mass Spectrometry (MS) has emerged as a powerful analytical strategy to detect histone PTMs, revealing interplays between neighbouring PTMs and enabling screens for their readers in a comprehensive and quantitative fashion. Here we provide an overview of the recent achievements of state-of-the-art mass spectrometry-based proteomics for the detailed qualitative and quantitative characterization of histone post-translational modifications, histone variants, and global interactomes at specific chromatin regions. This synopsis emphasizes how the advances in high resolution MS, from “Bottom Up” to “Top Down” analysis, together with the uptake of quantitative proteomics methods by chromatin biologists, have made MS a well-established method in the epigenetics field, enabling the acquisition of original information, highly complementary to that offered by more conventional, antibody-based, assays. Full article
(This article belongs to the collection Advances in Proteomic Research)

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