http://www.mdpi.com/rss/ Latest open access articles published at http://www.mdpi.com/ http://www.mdpi.com/2072-4292/1/3/144 The intensity data produced by terrestrial laser scanners has become a topic of increasing interest in the remote sensing community. We present a case study of radiometric calibration for two phase-shift continuous wave (CW) terrestrial scanners and discuss some major issues in correcting and applying the intensity data, and a practical calibration scheme based on external reference targets. There are differences in the operation of detectors of different (although similar type) instruments, and the detector effects must be known in order to calibrate the intensity data into values representing the target reflectance. It is, therefore, important that the effects of distance and target reflectance on the recorded intensity are carefully studied before using the intensity data from any terrestrial laser scanner. http://www.mdpi.com/2072-4292/1/3/144 Thu, 02 Jul 2009 22:00:01 GMT http://www.mdpi.com/2072-4292/1/3/122 Change detection of remotely sensed images is a particularly challenging task when the time series data come from different sensors. Indeed, many change indicators are based on radiometry measurements, used to calculate differences or ratios, that are no longer meaningful when the data have been acquired by different instruments. For this reason, it is interesting to study those indicators that do not rely completely on radiometric values. In this work a new approach is proposed based on similarity measures. A series of such measures is employed for automatic change detection of optical and SAR images and a comparison of their performance is carried out to establish the limits of their applicability and their sensitivity to the occurred changes. Initial results are promising and suggest similarity measures as possiblechange detectors in multi-sensor configurations. http://www.mdpi.com/2072-4292/1/3/122 Thu, 02 Jul 2009 22:00:01 GMT http://www.mdpi.com/1422-8599/2009/3/ The reaction of 3-methyl-1-phenyl-2-pyrazolin-5-one and 2-bromo-3-furoyl chloride in the presence of Ca(OH)2 in 1,4-dioxane gave the title compound. The latter was also obtained in much higher yield upon reaction of the starting materials in the system dichloromethane / triethylamine. Detailed spectroscopic data (1H NMR, 13C NMR, 15N NMR, IR, MS) are presented. http://www.mdpi.com/1422-8599/2009/3/ Thu, 02 Jul 2009 22:00:01 GMT http://www.mdpi.com/1424-8220/9/7/5263 A new spectroscopic parameter is used in this paper for on-line arc-welding quality monitoring. Plasma spectroscopy applied to welding diagnostics has typically relied on the estimation of the plasma electronic temperature, as there is a known correlation between this parameter and the quality of the seams. However, the practical use of this parameter gives rise to some uncertainties that could provoke ambiguous results. For an efficient on-line welding monitoring system, it is essential to prevent the appearance of false alarms, as well as to detect all the possible defects. In this regard, we propose the use of the root mean square signal of the welding plasma spectra, as this parameter will be proven to exhibit a good correlation with the quality of the resulting seams. Results corresponding to several arc-welding field tests performed on Inconel and titanium specimens will be discussed and compared to non-destructive evaluation techniques. http://www.mdpi.com/1424-8220/9/7/5263 Thu, 02 Jul 2009 22:00:01 GMT http://www.mdpi.com/1422-0067/10/7/2999 Tb (Tbilisi), the reference Brucellaphage strain, was classified as a member of the Podoviridae family with icosahedral capsids (57 ± 2 nm diameter) and short tails (32 ± 3 nm long). Brucellaphage DNA was double stranded and unmethylated; its molecular size was 34.5 kilobase pairs. Some sequences were found through RAPD analysis, TA cloning technology, and structural proteins were observed by using SDS-PAGE. Thus, the results have laid the foundation for the wider use of Brucellaphage’s basic mechanisms and practical applications. http://www.mdpi.com/1422-0067/10/7/2999 Thu, 02 Jul 2009 22:00:01 GMT http://www.mdpi.com/1422-0067/10/7/2986 This article presents an experimental analysis of the organic content of two serpentinized peridotite rocks of the terrestrial upper mantle. The samples have been dredged on the floor of the Ashadze and Logatchev hydrothermal sites on the Mid-Atlantic Ridge. In this preliminary analysis, amino acids and long chain n-alkanes are identified. They are most probably of biological/microbial origin. Some peaks remain unidentified. http://www.mdpi.com/1422-0067/10/7/2986 Thu, 02 Jul 2009 22:00:01 GMT http://www.mdpi.com/1422-0067/10/7/2972 Tissue engineering is a multidisciplinary field focused on in vitro reconstruction of mammalian tissues. In order to allow a similar three-dimensional organization of in vitro cultured cells, biocompatible scaffolds are needed. This need has provided immense momentum for research on “smart scaffolds” for use in cell culture. One of the most promising materials for tissue engineering and regenerative medicine is a hyaluronan derivative: a benzyl ester of hyaluronan (HYAFF®). HYAFF® can be processed to obtain several types of devices such as tubes, membranes, non-woven fabrics, gauzes, and sponges. All these scaffolds are highly biocompatible. In the human body they do not elicit any adverse reactions and are resorbed by the host tissues. Human hepatocytes, dermal fibroblasts and keratinocytes, chondrocytes, Schwann cells, bone marrow derived mesenchymal stem cells and adipose tissue derived mesenchymal stem cells have been successfully cultured in these meshes. The same scaffolds, in tube meshes, has been applied for vascular tissue engineering that has emerged as a promising technology for the design of an ideal, responsive, living conduit with properties similar to that of native tissue. http://www.mdpi.com/1422-0067/10/7/2972 Thu, 02 Jul 2009 22:00:01 GMT http://www.mdpi.com/1420-3049/14/7/2373 Withania somnifera, commonly known as Ashwagandha, is an important medicinal plant that has been used in Ayurvedic and indigenous medicine for over 3,000 years. In view of its varied therapeutic potential, it has also been the subject of considerable modern scientific attention. The major chemical constituents of the Withania genus, the withanolides, are a group of naturally occurring C28-steroidal lactone triterpenoids built on an intact or rearranged ergostane framework, in which C-22 and C-26 are appropriately oxidized to form a six-membered lactone ring. In recent years, numerous pharmacological investigations have been carried out into the components of W. somnifera extracts. We present here an overview of the chemical structures of triterpenoid components and their biological activity, focusing on two novel activities, tumor inhibition and antiangiogenic properties of withaferin A and the effects of withanolide A on Alzheimer's disease. The most recent attempts in biotechnological production of withanolides are also discussed. http://www.mdpi.com/1420-3049/14/7/2373 Thu, 02 Jul 2009 22:00:01 GMT http://www.mdpi.com/1999-4893/2/3/879 Specialized intelligent systems can be found everywhere: finger print, handwriting, speech, and face recognition, spam filtering, chess and other game programs, robots, et al. This decade the first presumably complete mathematical theory of artificial intelligence based on universal induction-prediction-decision-action has been proposed. This informationtheoretic approach solidifies the foundations of inductive inference and artificial intelligence. Getting the foundations right usually marks a significant progress and maturing of a field. The theory provides a gold standard and guidance for researchers working on intelligent algorithms. The roots of universal induction have been laid exactly half-a-century ago and the roots of universal intelligence exactly one decade ago. So it is timely to take stock of what has been achieved and what remains to be done. Since there are already good recent surveys, I describe the state-of-the-art only in passing and refer the reader to the literature. This article concentrates on the open problems in universal induction and its extension to universal intelligence. http://www.mdpi.com/1999-4893/2/3/879 Wed, 01 Jul 2009 22:00:01 GMT http://www.mdpi.com/1660-4601/6/7/1930 We assessed 12 urine metals in tobacco smoke-exposed and not exposed National Health and Nutrition Examination Survey participants. Our analysis included age, race/ethnicity, and poverty status. Gender and racial/ethnic differences in cadmium and lead and creatinine-adjusted and unadjusted data for group comparisons are presented. Smokers’ had higher cadmium, lead, antimony, and barium levels than nonsmokers. Highest lead levels were in the youngest subjects. Lead levels among adults with high second-hand smoke exposure equaled smokers. Older smokers had cadmium levels signaling the potential for cadmium-related toxicity. Given the potential toxicity of metals, our findings complement existing research on exposure to chemicals in tobacco smoke. http://www.mdpi.com/1660-4601/6/7/1930 Wed, 01 Jul 2009 22:00:01 GMT http://www.mdpi.com/1424-8220/9/7/5241 A relative height threshold is defined to separate potential roof points from the point cloud, followed by a segmentation of these points into homogeneous areas fulfilling the defined constraints of roof planes. The normal vector of each laser point is an excellent feature to decompose the point cloud into segments describing planar patches. An objectbased error assessment is performed to determine the accuracy of the presented classification. It results in 94.4% completeness and 88.4% correctness. Once all roof planes are detected in the 3D point cloud, solar potential analysis is performed for each point. Shadowing effects of nearby objects are taken into account by calculating the horizon of each point within the point cloud. Effects of cloud cover are also considered by using data from a nearby meteorological station. As a result the annual sum of the direct and diffuse radiation for each roof plane is derived. The presented method uses the full 3D information for both feature extraction and solar potential analysis, which offers a number of new applications in fields where natural processes are influenced by the incoming solar radiation (e.g., evapotranspiration, distribution of permafrost). The presented method detected fully automatically a subset of 809 out of 1,071 roof planes where the arithmetic mean of the annual incoming solar radiation is more than 700 kWh/m2. http://www.mdpi.com/1424-8220/9/7/5241 Wed, 01 Jul 2009 22:00:01 GMT http://www.mdpi.com/1424-8220/9/7/5224 Sampling and estimation of geographical attributes that vary across space (e.g., area temperature, urban pollution level, provincial cultivated land, regional population mortality and state agricultural production) are common yet important constituents of many real-world applications. Spatial attribute estimation and the associated accuracy depend on the available sampling design and statistical inference modelling. In the present work, our concern is areal attribute estimation, in which the spatial sampling and Kriging means are compared in terms of mean values, variances of mean values, comparative efficiencies and underlying conditions. Both the theoretical analysis and the empirical study show that the mean Kriging technique outperforms other commonly-used techniques. Estimation techniques that account for spatial correlation (dependence) are more efficient than those that do not, whereas the comparative efficiencies of the various methods change with surface features. The mean Kriging technique can be applied to other spatially distributed attributes, as well. http://www.mdpi.com/1424-8220/9/7/5224 Wed, 01 Jul 2009 22:00:01 GMT http://www.mdpi.com/1424-8220/9/7/5201 Web Portals function as a single point of access to information on the World Wide Web (WWW). The web portal always contacts the portal’s gateway for the information flow that causes network traffic over the Internet. Moreover, it provides real time/dynamic access to the stored information, but not access to the real time information. This inherent functionality of web portals limits their role for resource constrained digital devices in the Ubiquitous era (U-era). This paper presents a framework for the web portal in the U-era. We have introduced the concept of Local Regions in the proposed framework, so that the local queries could be solved locally rather than having to route them over the Internet. Moreover, our framework enables one-to-one device communication for real time information flow. To provide an in-depth analysis, firstly, we provide an analytical model for query processing at the servers for our framework-oriented web portal. At the end, we have deployed a testbed, as one of the world’s largest IP based wireless sensor networks testbed, and real time measurements are observed that prove the efficacy and workability of the proposed framework. http://www.mdpi.com/1424-8220/9/7/5201 Wed, 01 Jul 2009 22:00:01 GMT http://www.mdpi.com/1422-0067/10/7/2958 Heterogeneity is a fact that plagues the characterization and application of many self-assembled biological constructs. The importance of obtaining particle homogeneity in biological assemblies is a critical goal, as bulk analysis tools often require identical species for reliable interpretation of the results—indeed, important tools of analysis such as x-ray diffraction typically require over 90% purity for effectiveness. This issue bears particular importance in the case of lipoproteins. Lipid-binding proteins known as apolipoproteins can self assemble with liposomes to form reconstituted high density lipoproteins (rHDLs) or nanolipoprotein particles (NLPs) when used for biotechnology applications such as the solubilization of membrane proteins. Typically, the apolipoprotein and phospholipids reactants are self assembled and even with careful assembly protocols the product often contains heterogeneous particles. In fact, size polydispersity in rHDLs and NLPs published in the literature are frequently observed, which may confound the accurate use of analytical methods. In this article, we demonstrate a procedure for producing a pure, monodisperse NLP subpopulation from a polydisperse self-assembly using size exclusion chromatography (SEC) coupled with high resolution particle imaging by atomic force microscopy (AFM). In addition, NLPs have been shown to self assemble both in the presence and absence of detergents such as cholate, yet the effects of cholate on NLP polydispersity and separation has not been systematically examined. Therefore, we examined the separation properties of NLPs assembled in both the absence and presence of cholate using SEC and native gel electrophoresis. From this analysis, NLPs prepared with and without cholate showed particles with well defined diameters spanning a similar size range. However, cholate was shown to have a dramatic affect on NLP separation by SEC and native gel electrophoresis. Furthermore, under conditions where different sized NLPs were not sufficiently separated or purified by SEC, AFM was used to deconvolute the elution pattern of different sized NLPs. From this analysis we were able to purify an NLP subpopulation to 90% size homogeneity by taking extremely fine elutions from the SEC. With this purity, we generate high quality NLP crystals that were over 100 μm in size with little precipitate, which could not be obtained utilizing the traditional size exclusion techniques. This purification procedure and the methods for validation are broadly applicable to other lipoprotein particles. http://www.mdpi.com/1422-0067/10/7/2958 Wed, 01 Jul 2009 22:00:01 GMT http://www.mdpi.com/1422-0067/10/7/2935 G-quadruplexes are higher-order nucleic acids structures formed by G-rich sequences that are stabilized by tetrads of hydrogen-bonded guanine bases. Recently, there has been growing interest in the study of G-quadruplexes because of their possible involvement in many biological processes. Isothermal titration calorimetry (ITC) has been proven to be a useful tool to study the energetic aspects of G-quadruplex interactions. Particularly, ITC has been applied many times to determine the thermodynamic properties of drug-quadruplex interactions to screening among various drugs and to address drug design. In the present review, we will focus on the ITC studies of G-quadruplex structures and their interaction with proteins and drugs and the most significant results will be discussed. http://www.mdpi.com/1422-0067/10/7/2935 Wed, 01 Jul 2009 22:00:01 GMT http://www.mdpi.com/1420-3049/14/7/2363 A series of aromatic aldehydes was examined as substrates for salivary aldehyde dehydrogenase (sALDH) and the recombinant ALDH3A1. Para-substituted benzaldehydes, cinnamic aldehyde and 2-naphthaldehydes were found to be excellent substrates, and kinetic parameters for both salivary and recombinant ALDH were nearly identical. It was demonstrated that for the fluorogenic naphthaldehydes the only produced reaction product after incubation in saliva is the carboxylate. http://www.mdpi.com/1420-3049/14/7/2363 Wed, 01 Jul 2009 22:00:01 GMT http://www.mdpi.com/1420-3049/14/7/2356 N-Aryl-S,S-dimethylsulfimides 3(Ar = 4-NO2C6H4), 4 (Ar = Ph) and 5 (Ar = 4-Tol)react with Appel salt 1 to give the corresponding N-aryl-(4-chloro-5H-1,2,3-dithiazolylidene)benzenamines 8 (Ar = 4-NO2C6H4), 9 (Ar = Ph) and 10 (Ar = 4-Tol) in 84, 94 and 87% yields, respectively. The reaction proceeds in the absence of base and a proposed reaction mechanism is given. http://www.mdpi.com/1420-3049/14/7/2356 Wed, 01 Jul 2009 22:00:01 GMT http://www.mdpi.com/1420-3049/14/7/2345 A new synthetic compound, 6-hydroxy-2-tosylisoquinolin-1(2H)-one (2-OH), was selected for immunopharmacological activity tests. The effects of 2-OH on human peripheral blood mononuclear cell (PBMC) proliferation were determined by tritiated thymidine uptake. Compared to phytohemagglutinin (PHA; 5 μg/mL) stimulation, 2-OH significantly enhanced PBMC proliferation in a dose-dependent manner. The 50% enhancement activity (EC50) for 2-OH was 4.4±0.1 μM. In addition, effects of 2-OH on interleukin-2 (IL-2) and interferon-γ (IFN-γ) production in PBMC were determined by enzyme immunoassay. Results demonstrated that 2-OH stimulated IL-2 and IFN-γ production in PBMC. Data from reverse transcription-polymerase chain reaction (RT-PCR) and real-time PCR indicated that IL-2 and IFN-γ mRNA expression in PBMC could be induced by 2-OH. Therefore, 2-OH enhanced IL-2 and IFN-γ production in PBMC by modulation their gene expression. We suggest that 2-OH may be an immunomodulatory agent. http://www.mdpi.com/1420-3049/14/7/2345 Wed, 01 Jul 2009 22:00:01 GMT http://www.mdpi.com/1996-1073/2/3/477 According to the Electricity Directive, suppliers of electricity must disclose their electricity portfolio with regards to energy source and environmental impact. This paper gives some examples of disclosure systems and residual electricity mixes in Norway, Sweden and Finland, compared to an approach based on a common regional disclosure. Disclosures based on the E-TRACK standard are presented, as well as the variation in CO2 emissions from different residual mixes. The results from this study clearly show that there is a need for a harmonised, transparent and reliable system for the accounting of electricity disclosure in Europe. http://www.mdpi.com/1996-1073/2/3/477 Tue, 30 Jun 2009 22:00:01 GMT http://www.mdpi.com/1420-3049/14/7/2337 Selenium is a chemical element participating in the synthesis of selenocysteine residues that play a pivotal role in the enzymatic activity efficiency of selenoproteines. The methionine sulfoxide reductase (Msr) system that reduces methionine sulfoxide (MetO) to methionine comprises the selenoprotein MsrB (MsrB1) and the non-selenoprotein MsrA, which reduce the R- and the S- forms of MetO, respectively. The effects of a selenium deficient (SD) diet, which was administrated to wild type (WT) and MsrA knockout mice (MsrA-/-), on the expression and function of Msr-related proteins are examined and discussed. Additionally, new data about the levels of selenium in brain, liver, and kidneys of WT and MsrA-/- mice are presented and discussed. http://www.mdpi.com/1420-3049/14/7/2337 Tue, 30 Jun 2009 22:00:01 GMT http://www.mdpi.com/1996-1944/2/3/719 Polyurethane films have potential applications in medicine, especially for packaging implantable medical devices. Although polyether-urethanes have superior mechanical properties and are biocompatible, achieving water resistance is still a challenge. Polyether based polyurethanes with two different molecular weights (PTMO1000, PTMO2000) were prepared from 4,4’-diphenylmethane diisocyanate and poly(tetra-methylene oxide). Polymer films were introduced using different concentrations (0.5-10 wt %) of isopropyl myristate lipid (IPM) as a non-toxic modifying agent. The physical and mechanical properties of these polymers were characterised using physical and spectroscopy techniques (FTIR, Raman, DSC, DMA, tensile testing). Water contact angle and water uptake of the membranes as a function of IPM concentration was also determined accordingly. The FTIR and Raman data indicate that IPM is dispersed in polyurethane at ≤ 2wt% and thermal analysis confirmed this miscibility to be dependent on soft segment length. Modified polymers showed increased tensile strength and failure strain as well as reduced water uptake by up to 24% at 1-2 wt% IPM. http://www.mdpi.com/1996-1944/2/3/719 Mon, 29 Jun 2009 22:00:01 GMT http://www.mdpi.com/1660-3397/7/3/268 Owing to the increasing importance of aquaculture to compensate for the progressive worldwide reduction of natural fish and to the fact that several fish farming plants often suffer from heavy financial losses due to the development of infections caused by microbial pathogens, including multidrug resistant bacteria, more environmentally-friendly strategies to control fish infections are urgently needed to make the aquaculture industry more sustainable. The aim of this review is to briefly present the typical fish farming diseases and their threats and discuss the present state of chemotherapy to inactivate microorganisms in fish farming plants as well as to examine the new environmentally friendly approaches to control fish infection namely phage therapy and photodynamic antimicrobial therapy. http://www.mdpi.com/1660-3397/7/3/268 Mon, 29 Jun 2009 22:00:01 GMT http://www.mdpi.com/1424-8220/9/7/5173 The paper considers the connected target coverage (CTC) problem in wireless heterogeneous sensor networks (WHSNs) with multiple sensing units, termed MU-CTC problem. MU-CTC problem can be reduced to a connected set cover problem and further formulated as an integer linear programming (ILP) problem. However, the ILP problem is an NP-complete problem. Therefore, two distributed heuristic schemes, REFS (remaining energy first scheme) and EEFS (energy efficiency first scheme), are proposed. In REFS, each sensor considers its remaining energy and its neighbors’ decisions to enable its sensing units and communication unit such that all targets can be covered for the required attributes and the sensed data can be delivered to the sink. The advantages of REFS are its simplicity and reduced communication overhead. However, to utilize sensors’ energy efficiently, EEFS is proposed. A sensor in EEFS considers its contribution to the coverage and the connectivity to make a better decision. To our best knowledge, this paper is the first to consider target coverage and connectivity jointly for WHSNs with multiple sensing units. Simulation results show that REFS and EEFS can both prolong the network lifetime effectively. EEFS outperforms REFS in network lifetime, but REFS is simpler. http://www.mdpi.com/1424-8220/9/7/5173 Mon, 29 Jun 2009 22:00:01 GMT http://www.mdpi.com/1422-0067/10/7/2921 A symmetric pocket-like entity, composed of two L-shaped RNA units, encircles the peptide synthesis site within the contemporary ribosome. This entity was suggested to be the vestige of a dimeric proto-ribosome, which could have formed spontaneously in the prebiotic world, catalyzing non-coded peptide bond formation and elongation. This structural element, beyond offering the initial step in the evolution of translation, is hypothesized here to be linked to the origin of life. By catalyzing the production of random peptide chains, the proto-ribosome could have enabled the formation of primary enzymes, launching a process of co-evolution of the translation apparatus and the proteins, thus presenting an alternative to the RNA world hypothesis. http://www.mdpi.com/1422-0067/10/7/2921 Mon, 29 Jun 2009 22:00:01 GMT http://www.mdpi.com/1420-3049/14/7/2317 Pentavalent antimonials, including meglumine antimoniate and sodium stibogluconate, have been used for more than half a century in the therapy of the parasitic disease leishmaniasis. Even though antimonials are still the first-line drugs, they exhibit several limitations, including severe side effects, the need for daily parenteral administration and drug resistance. The molecular structure of antimonials, their metabolism and mechanism of action are still being investigated. Some recent studies suggest that pentavalent antimony acts as a prodrug that is converted to active and more toxic trivalent antimony. Other works support the direct involvement of pentavalent antimony. Recent data suggest that the biomolecules, thiols and ribonucleosides, may mediate the actions of these drugs. This review will summarize the progress to date on the chemistry and biochemistry of pentavalent antimony. It will also present the most recent works being done to improve antimonial chemotherapy. These works include the development of simple synthetic methods for pentavalent antimonials, liposome-based formulations for targeting the Leishmania parasites responsible for visceral leishmaniasis and cyclodextrin-based formulations to promote the oral delivery of antimony. http://www.mdpi.com/1420-3049/14/7/2317 Mon, 29 Jun 2009 22:00:01 GMT http://www.mdpi.com/2072-6643/1/1/18 Yerba maté (Ilex paraguariensis) is a native South America plant widely consumed as different beverages. Yerba maté leaves contains high concentrations of polyphenols that are responsible for its high in vitro and in vivo antioxidant activity. The in vivo antioxidant properties vis a vis LDL particles has not yet been studied for maté tea, the roasted yerba maté product. The aim of this study was to evaluate the antioxidant activity of maté tea ingestion ex vivo on human LDL. Fasting peripheral venous blood samples of healthy women were taken in three different times: before drinking the tea, one hour later and after one week (7 days) of daily consumption of maté tea. The isolated LDL was oxidized by three different pathways [copper (CuSO4), lipoxygenase and peroxynitrite (SIN-1)]. Conjugated dienes and structural modifications on LDL were evaluated. Ingestion of maté tea increased LDL resistance towards ex vivo copper oxidation, but did not alter the peroxidation pattern when SIN-1 or lipoxygenase were used as oxidants http://www.mdpi.com/2072-6643/1/1/18 Sun, 28 Jun 2009 22:00:01 GMT http://www.mdpi.com/1996-1944/2/3/710 We investigate the dark and illuminated current density-voltage (J/V) characteristics of poly(2-methoxy-5-(2’-ethylhexyloxy)1-4-phenylenevinylene) (MEH-PPV)/single-walled carbon nanotubes (SWNTs) composite photovoltaic cells. Using an exponential band tail model, the conduction mechanism has been analysed for polymer only devices and composite devices, in terms of space charge limited current (SCLC) conduction mechanism, where we determine the power parameters and the threshold voltages. Elaborated devices for MEH-PPV:SWNTs (1:1) composites showed a photoresponse with an open-circuit voltage Voc of 0.4 V, a short-circuit current density JSC of 1 µA/cm² and a fill factor FF of 43%. We have modelised the organic photovoltaic devices with an equivalent circuit, where we calculated the series and shunt resistances. http://www.mdpi.com/1996-1944/2/3/710 Sun, 28 Jun 2009 22:00:01 GMT http://www.mdpi.com/1422-8599/2009/3/ The preparation of 5-bromo-2-naphthol (4) in three steps from 5-amino-2-naphthol (1) is described. A sulfonic acid group is introduced at the 1-position as an activating and protecting group for the Sandmeyer reaction. The sulfonate group allows for the use of only water and sulfuric acid as solvents. The sulfonic acid is introduced with three equivalents of sulfuric acid, and it is removed in 20% aq. sulfuric acid. http://www.mdpi.com/1422-8599/2009/3/ Sun, 28 Jun 2009 22:00:01 GMT http://www.mdpi.com/1099-4300/11/3/326 The issue of the thermodynamics of a system of distinguishable particles is discussed in this paper. In constructing the statistical mechanics of distinguishable particles from the definition of Boltzmann entropy, it is found that the entropy is not extensive. The inextensivity leads to the so-called Gibbs paradox in which the mixing entropy of two identical classical gases increases. Lots of literature from different points of view were created to resolve the paradox. In this paper, starting from the Boltzmann entropy, we present the thermodynamics of the system of distinguishable particles. A straightforward way to get the corrected Boltzmann counting is shown. The corrected Boltzmann counting factor can be justified in classical statistical mechanics. http://www.mdpi.com/1099-4300/11/3/326 Sun, 28 Jun 2009 22:00:01 GMT http://www.mdpi.com/1424-8220/9/7/5149 The increasing availability of semiconductor-based nanostructures with novel and unique properties has sparked widespread interest in their use in the field of biosensing. The precise control over the size, shape and composition of these nanostructures leads to the accurate control of their physico-chemical properties and overall behavior. Furthermore, modifications can be made to the nanostructures to better suit their integration with biological systems, leading to such interesting properties as enhanced aqueous solubility, biocompatibility or bio-recognition. In the present work, the most significant applications of semiconductor nanostructures in the field of optical biosensing will be reviewed. In particular, the use of quantum dots as fluorescent bioprobes, which is the most widely used application, will be discussed. In addition, the use of some other nanometric structures in the field of biosensing, including porous semiconductors and photonic crystals, will be presented. http://www.mdpi.com/1424-8220/9/7/5149 Sun, 28 Jun 2009 22:00:01 GMT http://www.mdpi.com/1424-8220/9/7/5099 Electronic-nose devices have received considerable attention in the field of sensor technology during the past twenty years, largely due to the discovery of numerous applications derived from research in diverse fields of applied sciences. Recent applications of electronic nose technologies have come through advances in sensor design, material improvements, software innovations and progress in microcircuitry design and systems integration. The invention of many new e-nose sensor types and arrays, based on different detection principles and mechanisms, is closely correlated with the expansion of new applications. Electronic noses have provided a plethora of benefits to a variety of commercial industries, including the agricultural, biomedical, cosmetics, environmental, food, manufacturing, military, pharmaceutical, regulatory, and various scientific research fields. Advances have improved product attributes, uniformity, and consistency as a result of increases in quality control capabilities afforded by electronic-nose monitoring of all phases of industrial manufacturing processes. This paper is a review of the major electronic-nose technologies, developed since this specialized field was born and became prominent in the mid 1980s, and a summarization of some of the more important and useful applications that have been of greatest benefit to man. http://www.mdpi.com/1424-8220/9/7/5099 Sun, 28 Jun 2009 22:00:01 GMT http://www.mdpi.com/1422-0067/10/7/2911 The correct determination of the energy generated or absorbed in the sample cell of an Isothermal Titration Calorimeter (ITC) requires a thorough analysis of the calorimetric signal. This means the identification and quantification of any thermal effect inherent to the working method. In this work, it is carried out a review on several thermal effects, studied by us in previous work, and which appear when an ITC is used for measuring the heats of mixing of liquids in a continuous mode. These effects are due to: (i) the difference between the temperature of the injected liquid and the temperature of the mixture during the mixing process, (ii) the increase of the liquid volume located in the mixing cell and (iii) the stirring velocity. Besides, methods for the identification and quantification of the mentioned effects are suggested. http://www.mdpi.com/1422-0067/10/7/2911 Sun, 28 Jun 2009 22:00:01 GMT http://www.mdpi.com/1422-0067/10/7/2896 We investigated the presence of carbonic anhydrase in root and hypocotyl of etiolated soybean using enzymatic, histochemical, immunohistochemical and in situ hybridization approaches. In parallel, we used in situ hybridization and immunolocaliza-tion to determine the expression pattern and localization of phosphoenolpyruvate carboxylase. Their co-localization in the root tip as well as in the central cylinder, suggests that a large fraction of the CO2 may be re-introduced into C4 compounds. GmPK3 expression, coding for a cytoplasmic isoform of pyruvate kinase, was detected in all different root cell types, suggesting that both phosphoenolpyruvate-utilizing enzymes are involved in phosphoenolpyruvate metabolism in etiolated soybean roots; a case indicative of the necessary flexibility plant metabolism has to adopt in order to compensate various physiological conditions. http://www.mdpi.com/1422-0067/10/7/2896 Sun, 28 Jun 2009 22:00:01 GMT http://www.mdpi.com/1422-0067/10/7/2873 The thermodynamics of conventional surfactants, block copolymers and their mixtures in water was described to the light of the enthalpy function. The two methodologies, i.e. the van’t Hoff approach and the isothermal calorimetry, used to determine the enthalpy of micellization of pure surfactants and block copolymers were described. The van’t Hoff method was critically discussed. The aqueous copolymer+surfactant mixtures were analyzed by means of the isothermal titration calorimetry and the enthalpy of transfer of the copolymer from the water to the aqueous surfactant solutions. Thermodynamic models were presented to show the procedure to extract straightforward molecular insights from the bulk properties. http://www.mdpi.com/1422-0067/10/7/2873 Sun, 28 Jun 2009 22:00:01 GMT http://www.mdpi.com/1420-3049/14/7/2306 Aziridine-containing compounds have been of interest as anticancer agents since late 1970s. The design, synthesis and study of triaziquone (TZQ) analogues with the aim of obtaining compounds with enhanced efficacy and reduced toxicity are an ongoing research effort in our group. A series of bis-type TZQ derivatives has been prepared and their cytotoxic activities were investigated. The cytotoxicity of these bis-type TZQ derivatives were tested on three cancer lines, including breast cancer (BC-M1), oral cancer (OEC-M1), larynx epidermal cancer (Hep2) and one normal skin fibroblast (SF). Most of these synthetic derivatives displayed significant cytotoxic activities against human carcinoma cell lines, but weak activities against SF. Among tested analogues the bis-type TZQ derivative 1a showed lethal effects on larynx epidermal carcinoma cells (Hep2), with an LC50 value of 2.02 mM, and also weak cytotoxic activity against SF cells with an LC50 value over 10 mM for 24 hr treatment. Comparing the viability of normal fibroblast cells treated with compound 1a and TZQ, the LC50 value of the latter was 2.52 mM, indicating more toxicity than compound 1a. This significantly decreased cytotoxicity of compound 1a towards normal SF cells, while still maintaining the anticancer activity towards Hep2 cells is an interesting feature. Among the seven compounds synthesized, compound 1c has similar toxicity effects on the three cancer cell lines and SF normal cells as the TZQ monomer. http://www.mdpi.com/1420-3049/14/7/2306 Sun, 28 Jun 2009 22:00:01 GMT http://www.mdpi.com/1424-8220/9/7/5076 Selective attention is the strategy used by biological systems to cope with the inherent limits in their available computational resources, in order to efficiently process sensory information. The same strategy can be used in artificial systems that have to process vast amounts of sensory data with limited resources. In this paper we present a neuromorphic VLSI device, the “Selective Attention Chip” (SAC), which can be used to implement these models in multi-chip address-event systems. We also describe a real-time sensory-motor system, which integrates the SAC with a dynamic vision sensor and a robotic actuator. We present experimental results from each component in the system, and demonstrate how the complete system implements a real-time stimulus-driven selective attention model. http://www.mdpi.com/1424-8220/9/7/5076 Thu, 25 Jun 2009 22:00:01 GMT http://www.mdpi.com/1424-8220/9/7/5068 This investigation aimed to fabricate a flexible micro resistive temperature sensor to measure the junction temperature of a light emitting diode (LED). The junction temperature is typically measured using a thermal resistance measurement approach. This approach is limited in that no standard regulates the timing of data capture. This work presents a micro temperature sensor that can measure temperature stably and continuously, and has the advantages of being lightweight and able to monitor junction temperatures in real time. Micro-electro-mechanical-systems (MEMS) technologies are employed to minimize the size of a temperature sensor that is constructed on a stainless steel foil substrate (SS-304 with 30 μm thickness). A flexible micro resistive temperature sensor can be fixed between the LED chip and the frame. The junction temperature of the LED can be measured from the linear relationship between the temperature and the resistance. The sensitivity of the micro temperature sensor is 0.059 ± 0.004 Ω/°C. The temperature of the commercial CREE® EZ1000 chip is 119.97 °C when it is thermally stable, as measured using the micro temperature sensor; however, it was 126.9 °C, when measured by thermal resistance measurement. The micro temperature sensor can be used to replace thermal resistance measurement and performs reliably. http://www.mdpi.com/1424-8220/9/7/5068 Thu, 25 Jun 2009 22:00:01 GMT http://www.mdpi.com/1424-8220/9/7/5059 This study was carried out to identify the conditions of formation of calcium sulphoaluminate (3CaO·3Al2O3·CaSO4) by the sintering of a limestone (CaCO3) and alunite [K2SO4·Al2(SO4)3·4Al(OH)3] mixture with the following reagents: K2SO4, CaCO3, Al(OH)3, CaSO4·2H2O, and SiO2. When K2SO4, CaCO3, Al(OH)3, CaSO4·2H2O were mixed in molar ratios of 1:3:6:3 and sintered at 1,200~1,300 °C, only 3CaO·3Al2O3·CaSO4 and calcium langbeinite (2CaSO4·K2SO4) were generated. With an amount of CaO that is less than the stoichiometric molar ratio, 3CaO·3Al2O3·CaSO4 was formed and anhydrite (CaSO4) did not react and remained behind. With the amount of CaSO4 that is less than the stoichiometric molar ratio, the amounts of 3CaO·3Al2O3·CaSO4 and 2CaSO4·K2SO4 decreased, and that of CaO·Al2O3 increased. In the K2SO4-CaO-Al2O3-CaSO4-SiO2 system, to stabilize the formation of 3CaO·3Al2O3·CaSO4, 2CaSO4·K2SO4, and β-2CaO·SiO2, the molar ratios of CaO: Al2O3: CaSO4 must be kept at 3:3:1 and that of CaO/SiO2, over 2.0; otherwise, the generated amount of 3CaO·3Al2O3·CaSO4 decreased and that of gehlenite (2CaO·Al2O3·SiO2) with no hydration increased quantitatively. Therefore, if all SO3(g) generated by the thermal decomposition of alunite reacts with CaCO3 (or CaO, the thermal decomposition product of limestone) to form CaSO4 in an alunite- limestone system, 1 mol of pure alunite reacts with 6 mol of limestone to form 1 mol of 3CaO·3Al2O3·CaSO4 and 1 mol of 2CaSO4·K2SO4. http://www.mdpi.com/1424-8220/9/7/5059 Wed, 24 Jun 2009 22:00:01 GMT http://www.mdpi.com/1424-8220/9/7/5040 In this study, the influence of lead (II) ions on sunflower growth and biochemistry was investigated from various points of view. Sunflower plants were treated with 0, 10, 50, 100 and/or 500 µM Pb-EDTA for eight days. We observed alterations in growth in all experimental groups compared with non-treated control plants. Further we determined total content of proteins by a Bradford protein assay. By the eighth day of the experiment, total protein contents in all treated plants were much lower compared to control. Particularly noticeable was the loss of approx. 8 µg/mL or 15 µg/mL in shoots or roots of plants treated with 100 mM Pb-EDTA. We also focused our attention on the activity of alanine transaminase (ALT), aspartate transaminase (AST) and urease. Activity of the enzymes increased with increasing length of the treatment and applied concentration of lead (II) ions. This increase corresponds well with a higher metabolic activity of treated plants. Contents of cysteine, reduced glutathione (GSH), oxidized glutathione (GSSG) and phytochelatin 2 (PC2) were determined by high performance liquid chromatography with electrochemical detection. Cysteine content declined in roots of plants with the increasing time of treatment of plants with Pb-EDTA and the concentration of toxic substance. Moreover, we observed ten times higher content of cysteine in roots in comparison with shoots. The observed reduction of cysteine content probably relates with its utilization for biosynthesis of GSH and phytochelatins, because the content of GSH and PC2 was similar in roots and shoots and increased with increased treatment time and concentration of Pb-EDTA. Moreover, we observed oxidative stress caused by Pb-EDTA in roots where the GSSG/GSH ratio was about 0.66. In shoots, the oxidative stress was less distinctive, with a GSSG/GSH ratio 0.14. We also estimated the rate of phytochelatin biosynthesis from the slope of linear equations plotted with data measured in the particular experimental group. The highest rate was detected in roots treated with 100 µM of Pb-EDTA. To determine heavy metal ions many analytical instruments can be used, however, most of them are only able to quantify total content of the metals. This problem can be overcome using laser induced breakdown spectroscopy, because it is able to provide a high spatial-distribution of metal ions in different types of materials, including plant tissues. Data obtained were used to assemble 3D maps of Pb and Mg distribution. Distribution of these elements is concentrated around main vascular bundle of leaf, which means around midrib. http://www.mdpi.com/1424-8220/9/7/5040 Wed, 24 Jun 2009 22:00:01 GMT http://www.mdpi.com/2071-1050/1/2/319 The Magenta Shores development fronts 2.3 km of Tuggerah Beach on a formerly sand mined and landfill site in an urban growth area on the central coast of New South Wales. To increase the natural defences against storm waves and mass sand movements, the incipient foredune was retained and the parallel beach ridge landform was re-established by mimicking natural processes. Analysis of waste and resources led to a coordinated large-scale onsite re-use, recycling and waste management program that reduced landfill, transportation and natural resource requirements. Bitou bush removed from the Coastal Protection Zone was incorporated into golf course soils to improve grass growth. Leachate in the groundwater from the former landfill was diverted away from Tuggerah Lake and re-used in golf course irrigation. Upgrade of the local sewer treatment plant and installation of a public dual pipeline servicing Magenta and the adjoining township satisfied irrigation demands and provided non-potable water for the existing and expanding urban community. The sustainability challenges of the project were met through clear identification of existing environmental risks, application of scientific research, integrated team management and stakeholders’ cooperation. http://www.mdpi.com/2071-1050/1/2/319 Tue, 23 Jun 2009 22:00:01 GMT http://www.mdpi.com/1996-1073/2/2/456 This article follows the development of early UCG (underground coal gasification) ideas. Historical facts are discussed mainly from the technological perspective and early experiments in UCG are analyzed. Our search for the first successful UCG experiment brings to light a new finding, which was commonly overlooked in previous reviews. We also outline the key role that engineer and inventor A. G. Betts played in introducing technologies utilizing unmined coal; his original ideas are visible in the first successful UCG experiments and in modern UCG technology. http://www.mdpi.com/1996-1073/2/2/456 Tue, 23 Jun 2009 22:00:01 GMT http://www.mdpi.com/1996-1073/2/2/445 The reported patent-pending system comprises a novel biohydrogen reactor with a gravity settler for decoupling of SRT from HRT. The biohydrogenator was operated for 100 days at 37 °C, hydraulic retention time 8 h and solids retention time ranging from 2.2–2.5 days. The feed was a corn-syrup waste generated as a byproduct from an industrial facility for bioethanol production located in southwestern Ontario, Canada. The system was initially started up with a synthetic feed containing glucose at concentration of 8 g/L and other essential inorganics. Anaerobicaly-digested sludge from the St. Mary’s wastewater treatment plant (St. Mary, Ontario, Canada) was used as the seed, and was heat treated at 70 °C for 30 min to inhibit methanogens. After 10 days, when the hydrogen production was steady, the corn-syrup waste was introduced to the system. Glucose was the main constituent in the corn-syrup; its concentration was varied over a period of 90 days from 8 to 25 g/L. The change in glucose concentration was used to study the impact of variable organic loading on the stability of hydrogen production in the biohydrogenator. Hydrogen production rate increased from 10 L H2/L·d to 34 L H2/L·d with the increase of organic loading rate (OLR) from 26 to 81 gCOD/L·d, while a maximum hydrogen yield of 430 mL H2/gCOD was achieved in the system with an overall average of 385 mL H2/gCOD. http://www.mdpi.com/1996-1073/2/2/445 Tue, 23 Jun 2009 22:00:01 GMT http://www.mdpi.com/1660-4601/6/6/1917 Gamma-hydroxybutyric acid (GHB) is a short-chain fatty acid structurally similar to the inhibitory neurotransmitter γ-aminobutyric acid. Clinical trials have demonstrated that 50-100 mg/kg of GHB fractioned into three or six daily doses is able to suppress alcohol withdrawal symptoms and facilitates the maintenance of abstinence from alcohol. These studies have also shown that GHB craving episodes are a very limited phenomenon (about 10-15%). Thus, physicians with access should consider the clinical efficacy of GHB as a valid pharmacological tool for the treatment of alcohol addiction. http://www.mdpi.com/1660-4601/6/6/1917 Tue, 23 Jun 2009 22:00:01 GMT http://www.mdpi.com/1424-8220/9/6/5022 MANET, due to the nature of wireless transmission, has more security issues compared to wired environments. A specific type of attack, the Wormhole attack does not require exploiting any nodes in the network and can interfere with the route establishment process. Instead of detecting wormholes from the role of administrators as in previous methods, we implement a new protocol, MHA, using a hop-count analysis from the viewpoint of users without any special environment assumptions. We also discuss previous works which require the role of administrator and their reliance on impractical assumptions, thus showing the advantages of MHA. http://www.mdpi.com/1424-8220/9/6/5022 Tue, 23 Jun 2009 22:00:01 GMT http://www.mdpi.com/1424-8220/9/6/5001 Plum rains and typhoons are important weather systems in the Taiwan region. They can cause huge economic losses, but they are also considered as important water resources as they strike Taiwan annually and fill the reservoirs around the island. There are many meteorological sensors available for investigating the characteristics of weather and climate systems. Recently, the use of GPS as an alternative meteorological sensor has become popular due to the catastrophic impact of global climate change. GPS provides meteorological parameters mainly from the atmosphere. Precise Point Positioning (PPP) is a proven algorithm that has attracted attention in GPS related studies. This study uses GPS measurements collected at more than fifty reference stations of the e-GPS network in Taiwan. The first data set was collected from June 1st 2008 to June 7th 2008, which corresponds to the middle of the plum rain season in Taiwan. The second data set was collected from September 11th to September 17th 2008 during the landfall of typhoon Sinlaku. The data processing strategy is to process the measurements collected at the reference stations of the e-GPS network using the PPP technique to estimate the zenith tropospheric delay (ZTD) values of the sites; thus, the correlations between the ZTD values and the variation of rainfall during the plum rains and typhoon are analyzed. In addition, several characteristics of the meteorological events are identified using spatial and temporal analyses of the ZTD values estimated with the GPS network PPP technique. http://www.mdpi.com/1424-8220/9/6/5001 Tue, 23 Jun 2009 22:00:01 GMT http://www.mdpi.com/1424-8220/9/6/4986 A high-frequency ultrasonic transducer for copper or gold wire bonding has been designed, analyzed, prototyped and tested. Modeling techniques were used in the design phase and a practical design procedure was established and used. The transducer was decomposed into its elementary components. For each component, an initial design was obtained with simulations using a finite elements model (FEM). Simulated ultrasonic modules were built and characterized experimentally through the Laser Doppler Vibrometer (LDV) and electrical resonance spectra. Compared with experimental data, the FEM could be iteratively adjusted and updated. Having achieved a remarkably highly-predictive FEM of the whole transducer, the design parameters could be tuned for the desired applications, then the transducer is fixed on the wire bonder with a complete holder clamping was calculated by the FEM. The approach to mount ultrasonic transducers on wire bonding machines also is of major importance for wire bonding in modern electronic packaging. The presented method can lead to obtaining a nearly complete decoupling clamper design of the transducer to the wire bonder. http://www.mdpi.com/1424-8220/9/6/4986 Tue, 23 Jun 2009 22:00:01 GMT http://www.mdpi.com/1420-3049/14/6/2286 Current research on room-temperature ionic liquids as lubricants is described. Ionic liquids possess excellent properties such as non-volatility, non-flammability, and thermo-oxidative stability. The potential use of ionic liquids as lubricants was first proposed in 2001 and approximately 70 articles pertaining to fundamental research on ionic liquids have been published through May 2009. A large majority of the cations examined in this area are derived from 1,3-dialkylimidazolium, with a higher alkyl group on the imidazolium cation being beneficial for good lubrication, while it reduces the thermo-oxidative stability. Hydrophobic anions provide both good lubricity and significant thermo-oxidative stability. The anions decompose through a tribochemical reaction to generate metal fluoride on the rubbed surface. Additive technology to improve lubricity is also explained. An introduction to tribology as an interdisciplinary field of lubrication is also provided. http://www.mdpi.com/1420-3049/14/6/2286 Tue, 23 Jun 2009 22:00:01 GMT http://www.mdpi.com/1420-3049/14/6/2278 Symmetrical and non-symmetrical diimines derived from dimedone were synthesized by the reaction of their corresponding enaminothiones with primary amines. The synthesized compounds were characterized using micro analytical data and NMR spectroscopy. Theoretical calculations by B3LYP/6-31G(d,p) level of theory show that the enolic form is the most stable within the possible tautomeric forms of the compounds. http://www.mdpi.com/1420-3049/14/6/2278 Tue, 23 Jun 2009 22:00:01 GMT http://www.mdpi.com/1420-3049/14/6/2273 A sample of the marine brown alga D. divaricata collected off the coast of Yantai (P.R. China) was dried, powdered, and extracted with the mixture of CHCl3 and MeOH (1:1, v/v). By a combination of silica gel and Sephadex LH-20 column chromatography and preparative TLC, a new cadinane sesquiterpene 1,4-epoxymuurolan-5β-ol (1) was isolated from this species. Its structure was established by detailed MS and NMR spectroscopic analysis, as well as comparison with literature data. http://www.mdpi.com/1420-3049/14/6/2273 Tue, 23 Jun 2009 22:00:01 GMT http://www.mdpi.com/1996-1073/2/2/427 A two dimensional numerical model of a solid oxide fuel cell (SOFC) with electrode functional layers is presented. The model incorporates the partial differential equations for mass transport, electric conduction and electrochemical reactions in the electrode functional layers, the anode support layer, the cathode current collection layer and at the electrode/electrolyte interfaces. A dusty gas model is used in modeling the gas transport in porous electrodes. The model is capable of providing results in good agreement with the experimental I-V relationship. Numerical examples are presented to illustrate the applications of this numerical model as a tool for the design and optimization of SOFCs. For a stack assembly of a pitch width of 2 mm and an interconnect-electrode contact resistance of 0.025 Ωcm2, a typical SOFC stack cell should consist of a rib width of 0.9 mm, a cathode current collection layer thickness of 200–300 μm, a cathode functional layer thickness of 20–40 μm, and an anode functional layer thickness of 10–20 μm in order to achieve optimal performance. http://www.mdpi.com/1996-1073/2/2/427 Mon, 22 Jun 2009 22:00:01 GMT http://www.mdpi.com/1660-4601/6/6/1894 Controversy has arisen among the public and in the media regarding the health effects of fish intake in adults. Substantial evidence indicates that fish consumption reduces coronary heart disease mortality, the leading cause of death in developed and most developing nations. Conversely, concerns have grown regarding potential effects of exposure to mercury found in some fish. Seafood species are also rich in selenium, an essential trace element that may protect against both cardiovascular disease and toxic effects of mercury. Such protective effects would have direct implications for recommendations regarding optimal selenium intake and for assessing the potential impact of mercury exposure from fish intake in different populations. Because fish consumption appears to have important health benefits in adults, elucidating the relationships between fish intake, mercury and selenium exposure, and health risk is of considerable scientific and public health relevance. The evidence for health effects of fish consumption in adults is reviewed, focusing on the strength and consistency of evidence and relative magnitudes of effects of omega-3 fatty acids, mercury, and selenium. Given the preponderance of evidence, the focus is on cardiovascular effects, but other potential health effects, as well as potential effects of polychlorinated biphenyls and dioxins in fish, are also briefly reviewed. The relevant current unanswered questions and directions of further research are summarized. http://www.mdpi.com/1660-4601/6/6/1894 Mon, 22 Jun 2009 22:00:01 GMT http://www.mdpi.com/1424-8220/9/6/4955 Novel applications of online pH determinations at temperatures from -35 °C to 130 °C in technical and biological media, which are all but ideal aqueous solutions, require new approaches to pH monitoring. The glass electrode, introduced nearly hundred years ago, and chemical sensors based on field effect transistors (ISFET) show specific drawbacks with respect to handling and long-time stability. Proton sensitive metal oxides seem to be a promising and alternative to the state-of-the-art measuring methods, and might overcome some problems of classical hydrogen electrodes and reference electrodes. http://www.mdpi.com/1424-8220/9/6/4955 Mon, 22 Jun 2009 22:00:01 GMT http://www.mdpi.com/1424-8220/9/6/4941 Collecting raw data from a wireless sensor network for environmental monitoring applications can be a difficult task due to the high energy consumption involved. This is especially difficult when the application requires specialized sensors that have very high energy consumption, e.g. hydrological sensors for monitoring marine environments. This paper introduces a technique for reducing energy consumption by minimizing sensor sampling operations. In addition, we illustrate how a randomized algorithm can be used to improve temporal coverage such that the time between the occurrence of an event and its detection can be minimized. We evaluate our approach using real data collected from a sensor network deployment on the Great Barrier Reef. http://www.mdpi.com/1424-8220/9/6/4941 Mon, 22 Jun 2009 22:00:01 GMT http://www.mdpi.com/1422-0067/10/6/2860 Antimicrobial proteins (peptides) are known to play important roles in the innate host defense mechanisms of most living organisms, including plants, insects, amphibians and mammals. They are also known to possess potent antibiotic activity against bacteria, fungi, and even certain viruses. Recently, the rapid emergence of microbial pathogens that are resistant to currently available antibiotics has triggered considerable interest in the isolation and investigation of the mode of action of antimicrobial proteins (peptides). Plants produce a variety of proteins (peptides) that are involved in the defense against pathogens and invading organisms, including ribosome-inactivating proteins, lectins, protease inhibitors and antifungal peptides (proteins). Specially, the protease inhibitors can inhibit aspartic, serine and cysteine proteinases. Increased levels of trypsin and chymotrypsin inhibitors correlated with the plants resistance to the pathogen. Usually, the purification of antimicrobial proteins (peptides) with protease inhibitor activity was accomplished by salt-extraction, ultrafiltration and C18 reverse phase chromatography, successfully. We discuss the relation between antimicrobial and anti-protease activity in this review. Protease inhibitors from plants potently inhibited the growth of a variety of pathogenic bacterial and fungal strains and are therefore excellent candidates for use as the lead compounds for the development of novel antimicrobial agents. http://www.mdpi.com/1422-0067/10/6/2860 Mon, 22 Jun 2009 22:00:01 GMT http://www.mdpi.com/1422-0067/10/6/2849 Inorganic pyrophosphatase (PPase, EC 3.6.1.1) is an essential constitutive enzyme for energy metabolism and clearance of excess pyrophosphate. In this research, we investigated the sodium dodecyl sulfate (SDS)-induced inactivation and unfolding of PPase from Thermus thermophilus (T-PPase), a hyperthermophilic enzyme. The results indicated that like many other mesophilic enzymes, T-PPase could be fully inactivated at a low SDS concentration of 2 mM. Using an enzyme activity assay, SDS was shown to act as a mixed type reversible inhibitor, suggesting T-PPase contained specific SDS binding sites. At high SDS concentrations, T-PPase was denatured via a two-state process without the accumulation of any intermediate, as revealed by far-UV CD and intrinsic fluorescence. A comparison of the inactivation and unfolding data suggested that the inhibition might be caused by the specific binding of the SDS molecules to the enzyme, while the unfolding might be caused by the cooperative non-specific binding of SDS to T-PPase. The possible molecular mechanisms underlying the mixed type inhibition by SDS was proposed to be caused by the local conformational changes or altered charge distributions. http://www.mdpi.com/1422-0067/10/6/2849 Mon, 22 Jun 2009 22:00:01 GMT http://www.mdpi.com/1099-4300/11/2/295 In this paper, we propose definitions for a general, domain-independent concept of replicability and specifically focus on the notion of self-replication. We argue that selfreplication should not be viewed as a binary property of a system, but rather as a continuously valued property of the interaction between a system and its environment. This property, selfreplicability, represents the effect of the presence of a system upon the future presence of similar systems. We demonstrate both analytical and computational analysis of self-replicability for four distinct systems involving both discrete and continuous, formal and physical behaviors. http://www.mdpi.com/1099-4300/11/2/295 Sun, 21 Jun 2009 22:00:01 GMT http://www.mdpi.com/1660-3397/7/2/258 The Active Peptide from Shark Liver (APSL) was expressed in E. coli BL21 cells. The cDNA encoding APSL protein was obtained from shark regenerated hepatic tissue by RT-PCR, then it was cloned in the pET-28a expression vector. The expressed fusion protein was purified by Ni-IDA affinity chromatography. SDS-PAGE and HPLC analysis showed the purity of the purified fusion protein was more than 98%. The recombinant APSL (rAPSL) was tested for its biological activity both in vitro, by its ability to improve the proliferation of SMMC7721 cells, and in vivo, by its significant protective effects against acute hepatic injury induced by CCl4 and AAP (acetaminophen) in mice. In addition, the rAPSL could decrease the blood glucose concentration of mice with diabetes mellitus induced by alloxan. Paraffin sections of mouse pancreas tissues showed that rAPSL (3 mg/kg) could effectively protect mouse islets from lesions induced by alloxan, which indicated its potential application in theoretical research and industry. http://www.mdpi.com/1660-3397/7/2/258 Sun, 21 Jun 2009 22:00:01 GMT http://www.mdpi.com/1424-8220/9/6/4918 Deployment of wireless sensor networks (WSNs) has drawn much attention in recent years. Given the limited energy for sensor nodes, it is critical to implement WSNs with energy efficiency designs. Sensing coverage in networks, on the other hand, may degrade gradually over time after WSNs are activated. For mission-critical applications, therefore, energy-efficient coverage control should be taken into consideration to support the quality of service (QoS) of WSNs. Usually, coverage-controlling strategies present some challenging problems: (1) resolving the conflicts while determining which nodes should be turned off to conserve energy; (2) designing an optimal wake-up scheme that avoids awakening more nodes than necessary. In this paper, we implement an energy-efficient coverage control in cluster-based WSNs using a Memetic Algorithm (MA)-based approach, entitled CoCMA, to resolve the challenging problems. The CoCMA contains two optimization strategies: a MA-based schedule for sensor nodes and a wake-up scheme, which are responsible to prolong the network lifetime while maintaining coverage preservation. The MA-based schedule is applied to a given WSN to avoid unnecessary energy consumption caused by the redundant nodes. During the network operation, the wake-up scheme awakens sleeping sensor nodes to recover coverage hole caused by dead nodes. The performance evaluation of the proposed CoCMA was conducted on a cluster-based WSN (CWSN) under either a random or a uniform deployment of sensor nodes. Simulation results show that the performance yielded by the combination of MA and wake-up scheme is better than that in some existing approaches. Furthermore, CoCMA is able to activate fewer sensor nodes to monitor the required sensing area. http://www.mdpi.com/1424-8220/9/6/4918 Sun, 21 Jun 2009 22:00:01 GMT http://www.mdpi.com/1424-8220/9/6/4901 Considering the fact that sensors are energy-limited and the wireless channel conditions in wireless sensor networks, there is an urgent need for a low-complexity coding method with high compression ratio and noise-resisted features. This paper reviews the progress made in distributed joint source-channel coding which can address this issue. The main existing deployments, from the theory to practice, of distributed joint source-channel coding over the independent channels, the multiple access channels and the broadcast channels are introduced, respectively. To this end, we also present a practical scheme for compressing multiple correlated sources over the independent channels. The simulation results demonstrate the desired efficiency. http://www.mdpi.com/1424-8220/9/6/4901 Sun, 21 Jun 2009 22:00:01 GMT http://www.mdpi.com/1422-0067/10/6/2838 We review the studies on the folding mechanism of the β-hairpin tryptophan zipper 2 (trpzip2) and present some additional computational results to refine the picture of folding heterogeneity and pathways. We show that trpzip2 can have a two-state or a multi-state folding pattern, depending on whether it folds within the native basin or through local state basins on the high-dimensional free energy surface; Trpzip2 can fold along different pathways according to the packing order of tryptophan pairs. We also point out some important problems related to the folding mechanism of trpzip2 that still need clarification, e.g., a wide distribution of the computed conformations for the transition state ensemble. http://www.mdpi.com/1422-0067/10/6/2838 Sun, 21 Jun 2009 22:00:01 GMT http://www.mdpi.com/1422-0067/10/6/2809 The citric acid cycle (CAC) is the central pathway of energy transfer for many organisms, and understanding the origin of this pathway may provide insight into the origins of metabolism. In order to assess the thermodynamics of this key pathway for microorganisms that inhabit a wide variety of environments, especially those found in high temperature environments, we have calculated the properties and parameters for the revised Helgeson-Kirkham-Flowers equation of state for the major components of the CAC. While a significant amount of data is not available for many of the constituents of this fundamental pathway, methods exist that allow estimation of these missing data. http://www.mdpi.com/1422-0067/10/6/2809 Sun, 21 Jun 2009 22:00:01 GMT http://www.mdpi.com/1420-3049/14/6/2256 Neglected diseases represent a major health problem. It is estimated that one third of the world population is infected with tuberculosis (TB). Besides TB, Chagas disease, affects approximately 20 million people. Quinoxalines display great activities against TB and Chagas. Forty new quinoxaline 1,4-di-N-oxide derivatives have been prepared and tested against M. tuberculosis and T. cruzi. Carboxylic acid quinoxaline 1,4-di-N-oxides (CAQDOs) 5 and 17 showed MIC values on the same order as the reference antituberculosis drug, rifampicin. Meanwhile, CAQDOs 12 and 22 presented IC50 values in the same order as the anti-chagasic drug, nifurtimox. http://www.mdpi.com/1420-3049/14/6/2256 Sun, 21 Jun 2009 22:00:01 GMT http://www.mdpi.com/1420-3049/14/6/2254 We are pleased to report the increase of the impact factors of MDPI journals during 2007 and 2008. In 2005 and part of 2006, the use of a two tier publication system, whereby we offered full Open Access publication to those authors willing to contribute financially to support this option, while providing the alternative choice of free publication without Open Access for those authors who preferred not to pay, resulted in the obviously decreased impact factors seen in 2006 [...] http://www.mdpi.com/1420-3049/14/6/2254 Sun, 21 Jun 2009 22:00:01 GMT http://www.mdpi.com/1660-4601/6/6/1882 Cardiac diagnostic or therapeutic testing is an essential tool for diagnosis and treatment of cardiovascular disease, but it also involves considerable exposure to ionizing radiation. Every exposure produces a corresponding increase in cancer risk, and risks are highest for radiation exposure during infancy and adolescence. Recent studies on chromosomal biomarkers corroborate the current radioprotection assumption showing that even modest radiation load due to cardiac catheter-based fluoroscopic procedures can damage the DNA of the cell. In this article, we review the biological and clinical risks of cardiac imaging employing ionizing radiation. We also discuss the perspectives offered by the use of molecular biomarkers in order to better assess the long-term development of health effects. http://www.mdpi.com/1660-4601/6/6/1882 Thu, 18 Jun 2009 22:00:01 GMT http://www.mdpi.com/1424-8220/9/6/4890 SiO2-TiO2 thin films for use as fiber optic guiding layers of optical DNA biosensors were fabricated by the sol-gel dip coating technique. The chemical structure and the surface morphology of the films were characterized before immobilization. Single probe DNA strands were immobilized on the surface and the porosity of the films before the hybridization process was measured. Refractive index values of the films were measured using a Metricon 2010 prism coupler. On the surface of each film, 12 different spots were taken for measurement and calculation of the mean refractive index values with their standard deviations. The increased refractive index values after the immobilization of single DNA strands indicated that immobilization was successfully achieved. A further refractive index increase after the hybridization with target single DNA strands showed the possibility of detection of the E. coli O157:H7 EDL933 species using strands of 20-mers (5’-TAATATCGGTTGCGGAGGTG -3’) sequence. http://www.mdpi.com/1424-8220/9/6/4890 Thu, 18 Jun 2009 22:00:01 GMT http://www.mdpi.com/1424-8220/9/6/4869 Biological invasions can affect ecosystems across a wide spectrum of bioclimatic conditions. Therefore, it is often important to systematically monitor the spread of species over a broad region. Remote sensing has been an important tool for large-scale ecological studies in the past three decades, but it was not commonly used to study alien invasive plants until the mid 1990s. We synthesize previous research efforts on remote sensing of invasive plants from spatial, temporal and spectral perspectives. We also highlight a recently developed state-of-the-art image fusion technique that integrates passive and active energies concurrently collected by an imaging spectrometer and a scanning-waveform light detection and ranging (LiDAR) system, respectively. This approach provides a means to detect the structure and functional properties of invasive plants of different canopy levels. Finally, we summarize regional studies of biological invasions using remote sensing, discuss the limitations of remote sensing approaches, and highlight current research needs and future directions. http://www.mdpi.com/1424-8220/9/6/4869 Thu, 18 Jun 2009 22:00:01 GMT http://www.mdpi.com/1424-8220/9/6/4845 This paper revisits the problem of the readiness for field deployments of wireless- sensor networks by assessing the relevance of using Open Hardware and Software motes for environment monitoring. We propose a new prototype wireless sensor network that finetunes SquidBee motes to improve the life-time and sensing performance of an environment monitoring system that measures temperature, humidity and luminosity. Building upon two outdoor sensing scenarios, we evaluate the performance of the newly proposed energy-aware prototype solution in terms of link quality when expressed by the Received Signal Strength, Packet Loss and the battery lifetime. The experimental results reveal the relevance of using the Open Hardware and Software motes when setting up outdoor wireless sensor networks. http://www.mdpi.com/1424-8220/9/6/4845 Thu, 18 Jun 2009 22:00:01 GMT http://www.mdpi.com/1422-0067/10/6/2798 Volumetric strain can be divided into two parts: strain due to bond distance change and strain due to vacancy sources and sinks. In this paper, efforts are focused on studying the atomic lattice strain due to a vacancy in an FCC metal lattice with molecular dynamics simulation (MDS). The result has been compared with that from a continuum mechanics method. It is shown that using a continuum mechanics approach yields constitutive results similar to the ones obtained based purely on molecular dynamics considerations. http://www.mdpi.com/1422-0067/10/6/2798 Thu, 18 Jun 2009 22:00:01 GMT http://www.mdpi.com/1422-0067/10/6/2789 In this study, the effects of various boron compounds on the termite resistance of MDF panels were evaluated. Either borax (BX), boric acid (BA), zinc borate (ZB), or sodium perborate tetrahydrate (SPT) were added to urea-formaldehyde (UF) resin at target contents of 1%, 1.5%, 2% and 2.5% based on dry fiber weight. The panels were then manufactured using 12% urea-formaldehyde resin and 1% NH4Cl. MDF samples from the panels were tested against the subterranean termites, Coptotermes formosanus Shiraki. Laboratory termite resistance tests showed that all samples containing boron compounds had greater resistance against termite attack compared to untreated MDF samples. At the second and third weeks of exposure, nearly 100% termite mortalities were recorded in all boron compound treated samples. The highest termite mortalities were determined in the samples with either BA or BX. Also, it was found that SPT showed notable performance on the termite mortality. As chemical loadings increased, termite mortalities increased, and at the same time the weight losses of the samples decreased. http://www.mdpi.com/1422-0067/10/6/2789 Thu, 18 Jun 2009 22:00:01 GMT http://www.mdpi.com/1420-3049/14/6/2246 Two new steroidal saponins (1 and 2) were isolated from the dried bulbs of Allium macrostemon Bunge. Their structures were elucidated by the spectral data as 26-O-β-D-glucopyranosyl-5α-furost-25 (27)-ene-3β, 12β, 22, 26-tetraol-3-O-β-D-glucopyranosyl (1→2) [β-D-glucopyranosyl (1→3)]-β-D-glucopyranosyl (1→4)-β-D-galactopyranoside (1) and 26-O-β-D-glucopyranosyl-5β-furost-20 (22)-25 (27)-dien-3β, 12β, 26-triol-3-O-β-D-glucopyranosyl (1→2)-β-D-galactopyranoside (2), respectively. Their cytotoxic activities on several cancer cell lines (MCF-7, NCI-H460, SF-268 and HepG2) were tested. 1 showed special cytotoxity on SF-268, while 2 showed cytotoxity on NCI-H460 and SF-268 cell lines, respectively. http://www.mdpi.com/1420-3049/14/6/2246 Thu, 18 Jun 2009 22:00:01 GMT http://www.mdpi.com/1420-3049/14/6/2235 A convenient route for the preparation of C2-substituted imidazolium ionic liquids is reported. This method involves the alkylation of N-heterocyclic carbenes, which are readily generated from the C2-unsubstituted imidazolium ionic liquids. It works well for non-functionalized alkyl chlorides, and less well for alkyl bromides and iodides, likely due to competing elimination reactions. The resulting C2-substituted salts can be transformed into ionic liquids via standard anion metathesis reactions. http://www.mdpi.com/1420-3049/14/6/2235 Thu, 18 Jun 2009 22:00:01 GMT http://www.mdpi.com/1424-8220/9/6/4824 We study the problem of how to alleviate the exposed terminal effect in multihop wireless networks in the presence of log-normal shadowing channels. Assuming node location information, we propose an extension of the IEEE 802.11 MAC protocol that schedules concurrent transmissions in the presence of log-normal shadowing, thus mitigating the exposed terminal problem and improving network throughput and delay performance. We observe considerable improvements in throughput and delay achieved over the IEEE 802.11 MAC under various network topologies and channel conditions in ns-2 simulations, which justify the importance of considering channel randomness in MAC protocol design for multihop wireless networks. http://www.mdpi.com/1424-8220/9/6/4824 Wed, 17 Jun 2009 22:00:01 GMT http://www.mdpi.com/1422-0067/10/6/2763 A key property of complex biological systems is the presence of interaction networks formed by its different components, primarily proteins. These are crucial for all levels of cellular function, including architecture, metabolism and signalling, as well as the availability of cellular energy. Very stable, but also rather transient and dynamic protein-protein interactions generate new system properties at the level of multiprotein complexes, cellular compartments or the entire cell. Thus, interactomics is expected to largely contribute to emerging fields like systems biology or systems bioenergetics. The more recent technological development of high-throughput methods for interactomics research will dramatically increase our knowledge of protein interaction networks. The two most frequently used methods are yeast two-hybrid (Y2H) screening, a well established genetic in vivo approach, and affinity purification of complexes followed by mass spectrometry analysis, an emerging biochemical in vitro technique. So far, a majority of published interactions have been detected using an Y2H screen. However, with the massive application of this method, also some limitations have become apparent. This review provides an overview on available yeast two-hybrid methods, in particular focusing on more recent approaches. These allow detection of protein interactions in their native environment, as e.g. in the cytosol or bound to a membrane, by using cytosolic signalling cascades or split protein constructs. Strengths and weaknesses of these genetic methods are discussed and some guidelines for verification of detected protein-protein interactions are provided. http://www.mdpi.com/1422-0067/10/6/2763 Wed, 17 Jun 2009 22:00:01 GMT http://www.mdpi.com/1422-0067/10/6/2752 Current Isothermal Titration Calorimetry (ITC) data in the literature have relatively high errors in the measured enthalpies of protein-ligand binding reactions. There is a need for universal validation standards for titration calorimeters. Several inorganic salt co-precipitation and buffer protonation reactions have been suggested as possible enthalpy standards. The performances of several commercial calorimeters, including the VP-ITC, ITC200, and Nano ITC-III, were validated using these suggested standard reactions. http://www.mdpi.com/1422-0067/10/6/2752 Wed, 17 Jun 2009 22:00:01 GMT http://www.mdpi.com/1422-0067/10/6/2733 The wild wheat Aegilops tauschii Coss. has extensive natural variation available for breeding of common wheat. Drought stress tolerance is closely related to abscisic acid (ABA) sensitivity. In this study, 17 synthetic hexaploid wheat lines, produced by crossing the tetraploid wheat cultivar Langdon with 17 accessions of Ae. tauschii, were used for comparative analysis of natural variation in drought tolerance and ABA sensitivity. Ae. tauschii showed wide natural variation, with weak association between the traits. Drought-sensitive accessions of Ae. tauschii exhibited significantly less ABA sensitivity. D-genome variations observed at the diploid genome level were not necessarily reflected in synthetic wheats. However, synthetic wheats derived from the parental Ae. tauschii accessions with high drought tolerance were significantly more tolerant to drought stress than those from drought-sensitive accessions. Moreover, synthetic wheats with high drought tolerance showed significantly higher ABA sensitivity than drought-sensitive synthetic lines. In the hexaploid genetic background, therefore, weak association of ABA sensitivity with drought tolerance wasobserved. To study differences in gene expression patterns between stress-tolerant and -sensitive lines, levels of two Cor/Lea and three transcription factor gene transcripts were compared. The more tolerant accession of Ae. tauschii tended to accumulate more abundant transcripts of the examined genes than the sensitive accession under stress conditions. The expression patterns in the synthetic wheats seemed to be additive for parental lines exposed to drought and ABA treatments. However, the transcript levels of transcription factor genes in the synthetic wheats did not necessarily correspond to the postulated levels based on expression in parental lines. Allopolyploidization altered the expression levels of the stress-responsive genes in synthetic wheats. http://www.mdpi.com/1422-0067/10/6/2733 Wed, 17 Jun 2009 22:00:01 GMT http://www.mdpi.com/1420-3049/14/6/2226 Preparation of photo-responsive carbosilane dendrimers bearing 4-phenylazo-benzonitrile units on their molecular surface has been accomplished, and their both photo and thermal behaviors have also been characterized. These functional dendrimers suggest that the apparent molecular sizes of the cis-isomers are smaller than those of the corresponding trans-isomers, since the molecular diameter of these dendrimers would be shorter on the basis of trans→cis photo-isomerization of azobenzene. http://www.mdpi.com/1420-3049/14/6/2226 Wed, 17 Jun 2009 22:00:01 GMT http://www.mdpi.com/1996-1944/2/2/699 A three-level six-factor (arc power, substrate temperature, pre-treatment bias voltage, working pressure, deposition bias voltage and pretreatment time) orthogonal experimental array (L18) to optimize the adhesion strength of arc ion plating (AIP) TiAlN films was designed using the Taguchi method. An optimized film process, namely substrate temperature 220 °C, arc power 60 A, negative bias voltage -800 V, nitrogen pressure 10-2 Torr, pretreated voltage -450 V and pretreated time 15 minutes was obtained by the Taguchi program for the purpose of obtaining a larger critical load. The critical load of the optimized TiAlN film (53 N) was increased by 43% compared to the film with the highest critical load before optimization. The improvement in the adhesion strength of the films was attributed to the enhancement of hardness and the competitive growth of the (111), (200) and (220) orientations in the film. http://www.mdpi.com/1996-1944/2/2/699 Tue, 16 Jun 2009 22:00:01 GMT http://www.mdpi.com/1660-4601/6/6/1870 This paper illustrates how our development team has used some information technologies to let physicians obtain an instant abnormal laboratory result report for critical patient care services. We have implementeda healthcare message alerting system (HMAS) on a healthcare short message service (HSMS) engine and the distributed healthcare-oriented service environment (DiHOSE) in the National Taiwan University Hospital (NTUH). The HSMS engine has a general interface for all applications which could easily send any kind of alerting messages. Fundamentally, the DiHOSE uses HL7 standard formats to process the information exchange behaviors and can be flexibly extended for reasonable user requirements. The disease surveillance subsystem is an integral part of NTUH new hospital information system which is based on DiHOSE and the disease surveillance subsystem would send alerting messages through the HSMS engine. The latest cell phone message alerting subsystem, a case study, in NTUH proved that the DiHOSE could integrate the user required functions without much work. We concluded that both HSMS and DiHOSE can generalize and extend application demands efficiently. http://www.mdpi.com/1660-4601/6/6/1870 Tue, 16 Jun 2009 22:00:01 GMT http://www.mdpi.com/1424-8220/9/6/4804 Rapid pathogen sensing remains a pressing issue today since conventional identification methodsare tedious, cost intensive and time consuming, typically requiring from 48 to 72 h. In turn, chip based technologies, such as microarrays and microfluidic biochips, offer real alternatives capable of filling this technological gap. In particular microfluidic biochips make the development of fast, sensitive and portable diagnostic tools possible, thus promising rapid and accurate detection of a variety of pathogens. This paper will provide a broad overview of the novel achievements in the field of pathogen sensing by focusing on methods and devices that compliment microfluidics. http://www.mdpi.com/1424-8220/9/6/4804 Tue, 16 Jun 2009 22:00:01 GMT http://www.mdpi.com/1424-8220/9/6/4789 Due to anthropogenic activities, heavy metals still represent a threat for various trophic levels. If aquatic animals are exposed to heavy metals, we can obviously observe considerable toxicity. It is well known that organisms treated with heavy metals synthesize low molecular mass compounds rich in cysteine. In this work the effects of cadmium chloride (2.5, 5, 7.5, 10 and 12.5 mg/L) on common carp (Cyprinus carpio) was investigated. We determined cadmium content in tissue of muscle, liver and kidney by atomic absorption spectrometry with electrothermal atomization and content of metallothionein (MT) in the same tissues by the Brdicka reaction. Electrochemical methods can be considered as suitable and sensitive tools for MT determination in carp tissues. Results of our study showed a gradually enhancing of cadmium content in muscle with time and dose of cadmium chloride in water. MT levels in liver reached both high levels (above 130 ng/g) in fish exposed to 2.5, 5 and 7.5 mg/L and low level (to 50 ng/g) in fish exposed to 10 and 12.5 mg/L of cadmium chloride. This finding confirms that the synthesis of metallothioneins and binding capacity of these proteins is restricted. http://www.mdpi.com/1424-8220/9/6/4789 Tue, 16 Jun 2009 22:00:01 GMT http://www.mdpi.com/1424-8220/9/6/4766 In wireless sensor networks, data aggregation routing could reduce the number of data transmissions so as to achieve energy efficient transmission. However, data aggregation introduces data retransmission that is caused by co-channel interference from neighboring sensor nodes. This kind of co-channel interference could result in extra energy consumption and significant latency from retransmission. This will jeopardize the benefits of data aggregation. One possible solution to circumvent data retransmission caused by co-channel interference is to assign different channels to every sensor node that is within each other’s interference range on the data aggregation tree. By associating each radio with a different channel, a sensor node could receive data from all the children nodes on the data aggregation tree simultaneously. This could reduce the latency from the data source nodes back to the sink so as to meet the user’s delay QoS. Since the number of radios on each sensor node and the number of non-overlapping channels are all limited resources in wireless sensor networks, a challenging question here is to minimize the total transmission cost under limited number of non-overlapping channels in multi-radio wireless sensor networks. This channel constrained data aggregation routing problem in multi-radio wireless sensor networks is an NP-hard problem. I first model this problem as a mixed integer and linear programming problem where the objective is to minimize the total transmission subject to the data aggregation routing, channel and radio resources constraints. The solution approach is based on the Lagrangean relaxation technique to relax some constraints into the objective function and then to derive a set of independent subproblems. By optimally solving these subproblems, it can not only calculate the lower bound of the original primal problem but also provide useful information to get the primal feasible solutions. By incorporating these Lagrangean multipliers as the link arc weight, the optimization-based heuristics are proposed to get energy-efficient data aggregation tree with better resource (channel and radio) utilization. From the computational experiments, the proposed optimization-based approach is superior to existing heuristics under all tested cases. http://www.mdpi.com/1424-8220/9/6/4766 Tue, 16 Jun 2009 22:00:01 GMT http://www.mdpi.com/1420-3049/14/6/2212 Eight different functional monomers were used with ethylene glycol dimethacrylate as a cross-linker and molsidomine as a template to obtain molecularly imprinted polymers (MIPs). Non-covalent interactions between molsidomine and each functional monomer in DMSO prior to thermal bulk polymerization were utilized. On the basis of calculated imprinting factors, MIP prepared with N,N’-diallyltartaramide was chosen for further investigations. Examination of interactions in the prepolymerization complex between molsidomine and N,N’-diallyltartaramide was performed using the Job method. The absorbance of isomolar solutions reaching a maximum for the molar ratio of template to monomer equal to 1:4. Scatchard analysis was used for estimation of the dissociation constants and the maximum amounts of binding sites. The polymer based on N,N’-diallyltartaramide has two classes of heterogeneous binding sites characterized by two values of Kd and two Bmax: Kd(1) = 1.17 mM-1 and Bmax(1) = 0.8 μmol/mg for the higher affinity binding sites, and Kd(2) = 200 μM-1 and Bmax(2) = 2.05 μmol/mg for the lower affinity binding sites. Furthermore, effects of pH and organic solvent on binding properties of MIP and NIP were investigated, together with release of molsidomine from both MIP and NIP. http://www.mdpi.com/1420-3049/14/6/2212 Tue, 16 Jun 2009 22:00:01 GMT http://www.mdpi.com/1420-3049/14/6/2202 In recent years, few classes of natural products have received as much attention as phenolics and polyphenols. This special issue of Molecules, “Phenolics and Polyphenolics”, is a remarkable confirmation of this trend. Several aspects related to phenolics chemistry, comprising the several classes, will be discussed. In addition, the increasing interest in phenolics’ biological activities is covered, and several works addressing this matter are referred. http://www.mdpi.com/1420-3049/14/6/2202 Tue, 16 Jun 2009 22:00:01 GMT http://www.mdpi.com/1420-3049/14/6/2195 A total of 38 volatile components were identified in Rhodobryum giganteum (Schwaegr.) Par. collected from two different geographic regions by headspace solid-phase microextraction (HS-SPME), combined with gas chromatography/mass spectrometry (GC/MS). The volatile components included some aliphatic and aromatic aldehydes, monoterpene hydrocarbons and a sesquiterpene (α-farnesene), with 1-methoxy-2-propyl acetate and n-hexanal being found to be the most abundant volatile components. Analysis of the chemical constituents in the volatile oil of the two samples showed that ten compounds were shared. http://www.mdpi.com/1420-3049/14/6/2195 Tue, 16 Jun 2009 22:00:01 GMT http://www.mdpi.com/1420-3049/14/6/2181 The synthesis and structural determination of two new diterpenylhydroquinones: 2β-acetoxy-15-phenyl-(22,25-dihydroxy)-ent-labda-8(17),13(E)-diene(1) and 2β-hydroxy-15-phenyl-(22,25-dihydroxy)-ent-labda-8(17),13(E)-dieneis reported (2). These compounds were obtained by coupling via Electrophilic Aromatic Substitution (EAS) of 1,4-hydroquinone with primary or tertiary allyl alcohol derivatives of the natural ent-labdanes 3 and 4. With this new method, the best results were observed when mixtures of the primary alcohol derivatives 5-6 (26% yield of compound 1) and diol derivatives 9-10 (28% yield of compound 2) were used. http://www.mdpi.com/1420-3049/14/6/2181 Tue, 16 Jun 2009 22:00:01 GMT http://www.mdpi.com/2071-1050/1/2/302 Corporate carbon footprint (CCFP) is one of the most widely used indicators to synthesise environmental impacts on a corporate scale. We present a methodological proposal for CCFP calculation on the basis of the “method composed of financial accounts” abbreviated as MC3, considering the Spanish version “metodo compuesto de las cuentas contables”. The main objective is to describe how this method and the main outputs obtained work. This latter task is fulfilled with a practical case study, where we estimate the carbon footprint of a wine-producing company for the year 2006. Results show the origin of impacts generated, providing this firm with disaggregated information on the contribution to its CCFP of each one of its activities and consumptions. http://www.mdpi.com/2071-1050/1/2/302 Mon, 15 Jun 2009 22:00:01 GMT http://www.mdpi.com/1996-1944/2/2/674 The interaction between an external action and the order parameter, via a dependence described by a so-called Lifshitz invariant, is very important to determine the final configuration of liquid crystal cells. The external action can be an electric field applied to the bulk or the confinement due to free surfaces or cell walls. The Lifshitz invariant includes the order parameter in the form of an elastic strain. This coupling between elastic strains and fields, inserted in a Landau-Ginzburg formalism, is well known and gives rise to striction effects causing undulations in the director configuration. We want to discuss here the role of Lifshitz coupling terms, following an approach similar to that introduced by Dzyaloshinskii for magnetic materials. Case studies on nematics in planar and cylindrical cells are also proposed. http://www.mdpi.com/1996-1944/2/2/674 Mon, 15 Jun 2009 22:00:01 GMT http://www.mdpi.com/1996-1073/2/2/411 Current limiting fuses are widely used to protect the thyristors in DC drive systems. One very important problem is the choice of the correct voltage rating for fuses protecting regenerative DC drives, where many types of fault may occur, which makes fuse protection difficult. In the event of a commutation failure while regenerating, the fuses need to interrupt the loop supplied by the AC and DC voltages acting in series, which is the most difficult case for protection by fuses. In this paper a detailed study of the complete interruption process has been investigated by modeling of arcing process of the fuse protection against the regenerative circuit internal commutation fault. The effect of varying the motor time constant, supply impedance, number of fuses used to clear the fault and DC machine rating on the total transient response is studied. The model of a 200 A fuse is employed in this study. Fuses in series with both the semiconductor devices (F1) and fuses in AC lines (F2) are considered. Comparison was made between arc energy produced for fuses protecting the regenerative circuit if failure occurs, with the arc energy produced in a standard AC test in order to investigate the required voltage rating for the fuse. http://www.mdpi.com/1996-1073/2/2/411 Mon, 15 Jun 2009 22:00:01 GMT http://www.mdpi.com/1660-3397/7/2/249 Seco-chaetomugilins A and D were isolated from a strain of Chaetomium globosum that was originally isolated from the marine fish Mugil cephalus, and their absolute stereostructures were elucidated on the basis of spectroscopic analyses, including 1D and 2D NMR techniques, along with the chemical transformation from known chaetomugilins A and D. Seco-chaetomugilin D exhibited growth inhibitory activity against cultured P388, HL-60, L1210, and KB cells. http://www.mdpi.com/1660-3397/7/2/249 Mon, 15 Jun 2009 22:00:01 GMT http://www.mdpi.com/1424-8220/9/6/4751 Slot-waveguides allow light to be guided and strongly confined inside a nanometer-scale region of low refractive index. Thus stronger light-analyte interaction can be obtained as compared to that achievable by a conventional waveguide, in which the propagating beam is confined to the high-refractive-index core of the waveguide. In addition, slot-waveguides can be fabricated by employing CMOS compatible materials and technology, enabling miniaturization, integration with electronic, photonic and fluidic components in a chip, and mass production. These advantages have made the use of slot-waveguides for highly sensitive biochemical optical integrated sensors an emerging field. In this paper, recent achievements in slot-waveguide based biochemical sensing will be reviewed. These include slot-waveguide ring resonator based refractometric label-free biosensors, label-based optical sensing, and nano-opto-mechanical sensors. http://www.mdpi.com/1424-8220/9/6/4751 Mon, 15 Jun 2009 22:00:01 GMT http://www.mdpi.com/1424-8220/9/6/4728 The aim of the present paper is to review the technical and scientific state of the art of wireless sensor technologies and standards for wireless communications in the Agri-Food sector. These technologies are very promising in several fields such as environmental monitoring, precision agriculture, cold chain control or traceability. The paper focuses on WSN (Wireless Sensor Networks) and RFID (Radio Frequency Identification), presenting the different systems available, recent developments and examples of applications, including ZigBee based WSN and passive, semi-passive and active RFID. Future trends of wireless communications in agriculture and food industry are also discussed. http://www.mdpi.com/1424-8220/9/6/4728 Mon, 15 Jun 2009 22:00:01 GMT http://www.mdpi.com/1424-8220/9/6/4709 In clustered sensor networks, electing CHs (Cluster Heads) in a secure manner is very important because they collect data from sensors and send the aggregated data to the sink. If a compromised node is elected as a CH, it can illegally acquire data from all the members and even send forged data to the sink. Nevertheless, most of the existing CH election schemes have not treated the problem of the secure CH election. Recently, random value based protocols have been proposed to resolve the secure CH election problem. However, these schemes cannot prevent an attacker from suppressing its contribution for the change of CH election result and from selectively forwarding its contribution for the disagreement of CH election result. In this paper, we propose a modified random value scheme to prevent these disturbances. Our scheme dynamically adjusts the forwarding order of contributions and discards a received contribution when its signal strength is lower than the specified level to prevent these malicious actions. The simulation results have shown that our scheme effectively prevents attackers from changing and splitting an agreement of CH election result. Also, they have shown that our scheme is relatively energy-efficient than other schemes. http://www.mdpi.com/1424-8220/9/6/4709 Mon, 15 Jun 2009 22:00:01 GMT http://www.mdpi.com/1424-8220/9/6/4695 Data on the urban environment such as climate or air quality is usually collected at a few point monitoring stations distributed over a city. However, the synoptic viewpoint of satellites where a whole city is visible on a single image permits the collection of spatially comprehensive data at city-wide scale. In spite of rapid developments in remote sensing systems, deficiencies in image resolution and algorithm development still exist for applications such as air quality monitoring and urban heat island analysis. This paper describes state-of-the-art techniques for enhancing and maximising the spatial detail available from satellite images, and demonstrates their applications to the densely urbanised environment of Hong Kong. An Emissivity Modulation technique for spatial enhancement of thermal satellite images permits modelling of urban microclimate in combination with other urban structural parameters at local scale. For air quality monitoring, a Minimum Reflectance Technique (MRT) has been developed for MODIS 500 m images. The techniques described can promote the routine utilization of remotely sensed images for environmental monitoring in cities of the 21st century. http://www.mdpi.com/1424-8220/9/6/4695 Sun, 14 Jun 2009 22:00:01 GMT http://www.mdpi.com/1424-8220/9/6/4669 In this paper, we review our recent results in developing gas sensors for hydrogen using various device structures, including ZnO nanowires and GaN High Electron Mobility Transistors (HEMTs). ZnO nanowires are particularly interesting because they have a large surface area to volume ratio, which will improve sensitivity, and because they operate at low current levels, will have low power requirements in a sensor module. GaN-based devices offer the advantage of the HEMT structure, high temperature operation, and simple integration with existing fabrication technology and sensing systems. Improvements in sensitivity, recoverability, and reliability are presented. Also reported are demonstrations of detection of other gases, including CO2 and C2H4 using functionalized GaN HEMTs. This is critical for the development of lab-on-a-chip type systems and can provide a significant advance towards a market-ready sensor application. http://www.mdpi.com/1424-8220/9/6/4669 Sun, 14 Jun 2009 22:00:01 GMT http://www.mdpi.com/1424-8220/9/6/4649 In this paper, we present a blind image restoration algorithm to reconstruct a high resolution (HR) color image from multiple, low resolution (LR), degraded and noisy images captured by thin (< 1mm) TOMBO imaging systems. The proposed algorithm is an extension of our grayscale algorithm reported in [1] to the case of color images. In this color extension, each Point Spread Function (PSF) of each captured image is assumed to be different from one color component to another and from one imaging unit to the other. For the task of image restoration, we use all spectral information in each captured image to restore each output pixel in the reconstructed HR image, i.e., we use the most efficient global category of point operations. First, the composite RGB color components of each captured image are extracted. A blind estimation technique is then applied to estimate the spectra of each color component and its associated blurring PSF. The estimation process is formed in a way that minimizes significantly the interchannel cross-correlations and additive noise. The estimated PSFs together with advanced interpolation techniques are then combined to compensate for blur and reconstruct a HR color image of the original scene. Finally, a histogram normalization process adjusts the balance between image color components, brightness and contrast. Simulated and experimental results reveal that the proposed algorithm is capable of restoring HR color images from degraded, LR and noisy observations even at low Signal-to-Noise Energy ratios (SNERs). The proposed algorithm uses FFT and only two fundamental image restoration constraints, making it suitable for silicon integration with the TOMBO imager. http://www.mdpi.com/1424-8220/9/6/4649 Sun, 14 Jun 2009 22:00:01 GMT http://www.mdpi.com/1422-0067/10/6/2722 Mars is a CO2-abundant planet, whereas early Earth is thought to be also CO2-abundant. In addition, water was also discovered on Mars in 2008. From the facts and theory, we assumed that soda fountains were present on both planets, and this affected amino acid synthesis. Here, using a supercritical CO2/liquid H2O (10:1) system which mimicked crust soda fountains, we demonstrate production of amino acids from hydroxylamine (nitrogen source) and keto acids (oxylic acid sources). In this research, several amino acids were detected with an amino acid analyzer. Moreover, alanine polymers were detected with LC-MS. Our research lights up a new pathway in the study of life’s origin. http://www.mdpi.com/1422-0067/10/6/2722 Sun, 14 Jun 2009 22:00:01 GMT http://www.mdpi.com/1420-3049/14/6/2167 Theeffects of four extracting solvents [absolute ethanol, absolute methanol, aqueous ethanol (ethanol: water, 80:20 v/v) and aqueous methanol (methanol: water, 80:20 v/v)] and two extraction techniques (shaking and reflux) on the antioxidant activity of extracts of barks of Azadirachta indica, Acacia nilotica, Eugenia jambolana, Terminalia arjuna, leaves and roots of Moringa oleifera, fruit of Ficus religiosa,and leaves of Aloe barbadensis were investigated. The tested plant materials contained appreciable amounts of total phenolic contents (0.31-16.5 g GAE /100g DW), total flavonoid (2.63-8.66 g CE/100g DW); reducing power at 10 mg/mL extract concentration (1.36-2.91), DPPH. scavenging capacity (37.2-86.6%), and percent inhibition of linoleic acid (66.0-90.6%). Generally higher extract yields, phenolic contents and plant material antioxidant activity were obtained using aqueous organic solvents, as compared to the respective absolute organic solvents. Although higher extract yields were obtained by the refluxing extraction technique, in general higher amounts of total phenolic contents and better antioxidant activity were found in the extracts prepared using a shaker. http://www.mdpi.com/1420-3049/14/6/2167 Sun, 14 Jun 2009 22:00:01 GMT http://www.mdpi.com/1420-3049/14/6/2160 A synthesis of 2-methyl-6-vinylpyrazine was carried out by way of a ‘one pot’ reaction. In order to establish the efficiency of this synthesis the extraction of the volatiles released by male papaya fruit flies was performed by SPME (solid phase micro-extraction). The compound was separated and identified using GC/MSD (gas chromatography/mass spectrometry detector). http://www.mdpi.com/1420-3049/14/6/2160 Sun, 14 Jun 2009 22:00:01 GMT http://www.mdpi.com/2072-4292/1/2/107 Accurate models are used today for infrared and microwave satellite radiance simulations of the first two Stokes elements in the physical retrieval, data assimilation etc. of surface and atmospheric parameters. Although in the past a number of theoretical and experimental works have studied the polarimetric emission of some natural surfaces, specially the sea surface roughened by the wind (Windsat mission), very limited studies have been conducted on the polarimetric emission of rain cells or other natural surfaces. In this work, the polarimetric emission (four Stokes elements) of a rain cell is computed using the polarimetric radiative transfer equation assuming that raindrops are described by Pruppacher-Pitter shapes and that their size distribution follows the Laws-Parsons law. The Boundary Element Method (BEM) is used to compute the exact bistatic scattering coefficients for each raindrop shape and different canting angles. Numerical results are compared to the Rayleigh or Mie scattering coefficients, and to Oguchi’s ones, showing that above 1-2 mm raindrop size the exact formulation is required to model properly the scattering. Simulation results using BEM are then compared to the experimental data gathered with a X-band polarimetric radiometer. It is found that the depolarization of the radiation caused by the scattering of non-spherical raindrops induces a non-zero third Stokes parameter, and the differential phase of the scattering coefficients induces a non-zero fourth Stokes parameter. http://www.mdpi.com/2072-4292/1/2/107 Thu, 11 Jun 2009 22:00:01 GMT http://www.mdpi.com/2071-1050/1/2/298 Although on the publisher’s website for this book [1], chapter numbers are given, in the copy of the book I received there are no chapter numbers in the Table of Contents, even though in the main text, cross references are made and the chapter numbers are mentioned. This book is divided into the following sections: [...] http://www.mdpi.com/2071-1050/1/2/298 Thu, 11 Jun 2009 22:00:01 GMT