Special Issue "Metagenomics: a Powerful Lens Viewing the Microbial World"
Deadline for manuscript submissions: closed (30 July 2014)
Dr. Weizhong Li
Center for Research in Biological Systems, University of California, San Diego, 9500 Gilman Drive MC 0446, Atkinson Hall, Room 3113, La Jolla, CA 92093-0446, USA
Interests: development of computational and bioinformatics methods; genomics; metagenomics; RNA-seq; system biology; human microbiome; next generation sequence data analysis; development of workflows; high performance computing
Metagenomics has been one of the most fast-developing fields of the last decade. Through culture-independent genomic sequencing, the metagenomics approach offers an unprecedented view of the diverse microbial world in different environments, such as ocean and other water bodies, human and animal body sites, soil, air and many others. At a genomic level, metagenomics reveals the identity, composition and dynamics of microbial communities and interactions with their environments. With the rapid advance of next generation high throughput sequencing technologies, metagenomics approach is now widely utilized by researchers in many disciplines such as ecology, energy, agriculture, biotechnology and medicine. As such a fast-growing field, metagenomics also presents many great challenges that need to be addressed. This Special Issue is intended to provide a snapshot of the state-of-the-art of today’s metagenomics research. We plan to publish original research papers as well as review articles on studies of different microbial environments and systems using the metagenomics approach, novel computational and statistical methods for metagenomics data analysis, and innovative technologies and protocols that expand the existing metagenomics capabilities. We especially encourage topics that discuss and address the imposing challenges in metagenomics, introduce novel methodologies, and provide new insights into the microbial world, for example, accurate species and strain identification and profiling, utilization and integration of multiple omics approaches (e.g. metagenomics, metatranscriptomics, 16S, metaproteomics and metabolomics), in depth investigation of novel habitats, microbiome-based disease models, and so on.
Dr. Weizhong Li
Manuscripts should be submitted online at www.mdpi.com by registering and logging in to this website. Once you are registered, click here to go to the submission form. Manuscripts can be submitted until the deadline. Papers will be published continuously (as soon as accepted) and will be listed together on the special issue website. Research articles, review articles as well as communications are invited. For planned papers, a title and short abstract (about 100 words) can be sent to the Editorial Office for announcement on this website.
Submitted manuscripts should not have been published previously, nor be under consideration for publication elsewhere (except conference proceedings papers). All manuscripts are refereed through a peer-review process. A guide for authors and other relevant information for submission of manuscripts is available on the Instructions for Authors page. International Journal of Molecular Sciences is an international peer-reviewed Open Access monthly journal published by MDPI.
- next generation sequencing
- microbial ecology
- metagenomics sequence analysis
- metagenome comparison
Int. J. Mol. Sci. 2014, 15(8), 14234-14246; doi:10.3390/ijms150814234
Received: 21 June 2014; in revised form: 2 August 2014 / Accepted: 6 August 2014 / Published: 15 August 2014| PDF Full-text (2950 KB)
Int. J. Mol. Sci. 2014, 15(7), 12364-12378; doi:10.3390/ijms150712364
Received: 31 March 2014; in revised form: 23 June 2014 / Accepted: 25 June 2014 / Published: 14 July 2014| PDF Full-text (1211 KB) | HTML Full-text | XML Full-text | Supplementary Files
Article: Generation and Analysis of Expressed Sequence Tags (ESTs) from Halophyte Atriplex canescens to Explore Salt-Responsive Related Genes
Int. J. Mol. Sci. 2014, 15(6), 11172-11189; doi:10.3390/ijms150611172
Received: 20 May 2014; in revised form: 11 June 2014 / Accepted: 12 June 2014 / Published: 23 June 2014| PDF Full-text (711 KB) | HTML Full-text | XML Full-text | Supplementary Files
Review: Viral Metagenomics on Animals as a Tool for the Detection of Zoonoses Prior to Human Infection?
Int. J. Mol. Sci. 2014, 15(6), 10377-10397; doi:10.3390/ijms150610377
Received: 12 March 2014; in revised form: 24 May 2014 / Accepted: 28 May 2014 / Published: 10 June 2014| PDF Full-text (1481 KB) | HTML Full-text | XML Full-text
Article: A Comprehensive Insight into Tetracycline Resistant Bacteria and Antibiotic Resistance Genes in Activated Sludge Using Next-Generation Sequencing
Int. J. Mol. Sci. 2014, 15(6), 10083-10100; doi:10.3390/ijms150610083
Received: 30 March 2014; in revised form: 9 May 2014 / Accepted: 22 May 2014 / Published: 5 June 2014| PDF Full-text (894 KB) | HTML Full-text | XML Full-text | Supplementary Files
Int. J. Mol. Sci. 2014, 15(5), 8878-8892; doi:10.3390/ijms15058878
Received: 31 March 2014; in revised form: 29 April 2014 / Accepted: 8 May 2014 / Published: 19 May 2014| PDF Full-text (222 KB) | HTML Full-text | XML Full-text
Last update: 27 March 2014