Modeling sub-canopy elevation is an important step in the processing of waveform lidar data to measure three dimensional forest structure. Here, we present a methodology based on high resolution discrete-return lidar (DRL) to correct the ground elevation derived from large-footprint Laser Vegetation Imaging Sensor (LVIS) and to improve measurement of forest structure. We use data acquired over Barro Colorado Island, Panama by LVIS large-footprint lidar (LFL) in 1998 and DRL in 2009. The study found an average vertical difference of 28.7 cm between 98,040 LVIS last-return points and the discrete-return lidar ground surface across the island. The majority (82.3%) of all LVIS points matched discrete return elevations to 2 m or less. Using a multi-step process, the LVIS last-return data is filtered using an iterative approach, expanding window filter to identify outlier points which are not part of the ground surface, as well as applying vertical corrections based on terrain slope within the individual LVIS footprints. The results of the experiment demonstrate that LFL ground surfaces can be effectively filtered using methods adapted from discrete-return lidar point filtering, reducing the average vertical error by 15 cm and reducing the variance in LVIS last-return data by 70 cm. The filters also reduced the largest vertical estimations caused by sensor saturation in the upper reaches of the forest canopy by 14.35 m, which improve forest canopy structure measurement by increasing accuracy in the sub-canopy digital elevation model. Full article

We present the development of a low-cost Unmanned Aerial Vehicle-Light Detecting and Ranging (UAV-LiDAR) system and an accompanying workflow to produce 3D point clouds. UAV systems provide an unrivalled combination of high temporal and spatial resolution datasets. The TerraLuma UAV-LiDAR system has been developed to take advantage of these properties and in doing so overcome some of the current limitations of the use of this technology within the forestry industry. A modified processing workflow including a novel trajectory determination algorithm fusing observations from a GPS receiver, an Inertial Measurement Unit (IMU) and a High Definition (HD) video camera is presented. The advantages of this workflow are demonstrated using a rigorous assessment of the spatial accuracy of the final point clouds. It is shown that due to the inclusion of video the horizontal accuracy of the final point cloud improves from 0.61 m to 0.34 m (RMS error assessed against ground control). The effect of the very high density point clouds (up to 62 points per m2) produced by the UAV-LiDAR system on the measurement of tree location, height and crown width are also assessed by performing repeat surveys over individual isolated trees. The standard deviation of tree height is shown to reduce from 0.26 m, when using data with a density of 8 points perm2, to 0.15mwhen the higher density data was used. Improvements in the uncertainty of the measurement of tree location, 0.80 m to 0.53 m, and crown width, 0.69 m to 0.61 m are also shown. Full article

Conventional spectral-based classification methods have significant limitations in the digital classification of urban land-use and land-cover classes from high-resolution remotely sensed data because of the lack of consideration given to the spatial properties of images. To recognize the complex distribution of urban features in high-resolution image data, texture information consisting of a group of pixels should be considered. Lacunarity is an index used to characterize different texture appearances. It is often reported that the land-use and land-cover in urban areas can be effectively classified using the lacunarity index with high-resolution images. However, the applicability of the maximum-likelihood approach for hybrid analysis has not been reported. A more effective approach that employs the original spectral data and lacunarity index can be expected to improve the accuracy of the classification. A new classification procedure referred to as “gradable classification method” is proposed in this study. This method improves the classification accuracy in incremental steps. The proposed classification approach integrates several classification maps created from original images and lacunarity maps, which consist of lacnarity values, to create a new classification map. The results of this study confirm the suitability of the gradable classification approach, which produced a higher overall accuracy (68%) and kappa coefficient (0.64) than those (65% and 0.60, respectively) obtained with the maximum-likelihood approach. Full article

In this paper, the three-component power decomposition for polarimetric SAR (PolSAR) data with an adaptive volume scattering model is proposed. The volume scattering model is assumed to be reflection-symmetric but parameterized. For each image pixel, the decomposition first starts with determining the adaptive parameter based on matrix similarity metric. Then, a respective scattering power component is retrieved with the established procedure. It has been shown that the proposed method leads to complete elimination of negative powers as the result of the adaptive volume scattering model. Experiments with the PolSAR data from both the NASA/JPL (National Aeronautics and Space Administration/Jet Propulsion Laboratory) Airborne SAR (AIRSAR) and the JAXA (Japan Aerospace Exploration Agency) ALOS-PALSAR also demonstrate that the proposed method not only obtains similar/better results in vegetated areas as compared to the existing Freeman-Durden decomposition but helps to improve discrimination of the urban regions. Full article

Sensor miniaturisation, improved battery technology and the availability of low-cost yet advanced Unmanned Aerial Vehicles (UAV) have provided new opportunities for environmental remote sensing. The UAV provides a platform for close-range aerial photography. Detailed imagery captured from micro-UAV can produce dense point clouds using multi-view stereopsis (MVS) techniques combining photogrammetry and computer vision. This study applies MVS techniques to imagery acquired from a multi-rotor micro-UAV of a natural coastal site in southeastern Tasmania, Australia. A very dense point cloud ( < 1–3 cm point spacing) is produced in an arbitrary coordinate system using full resolution imagery, whereas other studies usually downsample the original imagery. The point cloud is sparse in areas of complex vegetation and where surfaces have a homogeneous texture. Ground control points collected with Differential Global Positioning System (DGPS) are identified and used for georeferencing via a Helmert transformation. This study compared georeferenced point clouds to a Total Station survey in order to assess and quantify their geometric accuracy. The results indicate that a georeferenced point cloud accurate to 25–40 mm can be obtained from imagery acquired from ~50 m. UAV-based image capture provides the spatial and temporal resolution required to map and monitor natural landscapes. This paper assesses the accuracy of the generated point clouds based on field survey points. Based on our key findings we conclude that sub-decimetre terrain change (in this case coastal erosion) can be monitored. Full article

Canopy height data collected with an airborne laser scanner (ALS) flown across unmanaged parts of Canada’s boreal forest in the summer of 2010 were used—as stand-alone data—to derive a least-squares polynomial (LSPOL) between presumed post-fire recovered canopy heights and duration (in years) since fire (YSF). Flight lines of the > 25,000-km ALS survey intersected 163 historic fires with a known day of detection and fire perimeter. A sequential statistical testing procedure was developed to separate post-fire recovered canopy heights from pre-fire canopy heights. Of the 153 fires with > 5 YSF, 121 cases (89%) could be resolved to a complete or partial post-fire canopy replacement. The estimated LSPOL can be used to estimate post-fire aboveground biomass and carbon sequestration in areas where alternative information is dated or absent. These LIDAR derived findings are especially useful as existing growth information is largely developed for higher productivity ecosystems and not applicable to these ecosystems subject to large wildfires. Full article

Outlining patches dominated by different plants in wetland vegetation provides information on species succession, microhabitat patterns, wetland health and ecosystem services. Aerial photogrammetry and hyperspectral imaging are the usual data acquisition methods but the application of airborne laser scanning (ALS) as a standalone tool also holds promises for this field since it can be used to quantify 3-dimensional vegetation structure. Lake Balaton is a large shallow lake in western Hungary with shore wetlands that have been in decline since the 1970s. In August 2010, an ALS survey of the shores of Lake Balaton was completed with 1 pt/m² discrete echo recording. The resulting ALS dataset was processed to several output rasters describing vegetation and terrain properties, creating a sufficient number of independent variables for each raster cell to allow for basic multivariate classification. An expert-generated decision tree algorithm was applied to outline wetland areas, and within these, patches dominated by Typha sp. Carex sp., and Phragmites australis. Reed health was mapped into four categories: healthy, stressed, ruderal and die-back. The output map was tested against a set of 775 geo-tagged ground photographs and had a user’s accuracy of > 97% for detecting non-wetland features (trees, artificial surfaces and low density Scirpus stands), > 72% for dominant genus detection and > 80% for most reed health categories (with 62% for one category). Overall classification accuracy was 82.5%, Cohen’s Kappa 0.80, which is similar to some hyperspectral or multispectral-ALS fusion studies. Compared to hyperspectral imaging, the processing chain of ALS can be automated in a similar way but relies directly on differences in vegetation structure and actively sensed reflectance and is thus probably more robust. The data acquisition parameters are similar to the national surveys of several European countries, suggesting that these existing datasets could be used for vegetation mapping and monitoring. Full article

The retrieval of nutrient concentration in sugarcane through hyperspectral remote sensing is widely known to be affected by canopy architecture. The goal of this research was to develop an estimation model that could explain the nitrogen variations in sugarcane with combined cultivars. Reflectance spectra were measured over the sugarcane canopy using a field spectroradiometer. The models were calibrated by a vegetation index and multiple linear regression. The original reflectance was transformed into a First-Derivative Spectrum (FDS) and two absorption features. The results indicated that the sensitive spectral wavelengths for quantifying nitrogen content existed mainly in the visible, red edge and far near-infrared regions of the electromagnetic spectrum. Normalized Differential Index (NDI) based on FDS_(750/700) and Ratio Spectral Index (RVI) based on FDS_(724/700) are best suited for characterizing the nitrogen concentration. The modified estimation model, generated by the Stepwise Multiple Linear Regression (SMLR) technique from FDS centered at 410, 426, 720, 754, and 1,216 nm, yielded the highest correlation coefficient value of 0.86 and Root Mean Square Error of the Estimate (RMSE) value of 0.033%N (n = 90) with nitrogen concentration in sugarcane. The results of this research demonstrated that the estimation model developed by SMLR yielded a higher correlation coefficient with nitrogen content than the model computed by narrow vegetation indices. The strong correlation between measured and estimated nitrogen concentration indicated that the methods proposed in this study could be used for the reliable diagnosis of nitrogen quantity in sugarcane. Finally, the success of the field spectroscopy used for estimating the nutrient quality of sugarcane allowed an additional experiment using the polar orbiting hyperspectral data for the timely determination of crop nutrient status in rangelands without any requirement of prior cultivar information. Full article

Unmanned Aircraft Systems (UAS) have evolved rapidly over the past decade driven primarily by military uses, and have begun finding application among civilian users for earth sensing reconnaissance and scientific data collection purposes. Among UAS, promising characteristics are long flight duration, improved mission safety, flight repeatability due to improving autopilots, and reduced operational costs when compared to manned aircraft. The potential advantages of an unmanned platform, however, depend on many factors, such as aircraft, sensor types, mission objectives, and the current UAS regulatory requirements for operations of the particular platform. The regulations concerning UAS operation are still in the early development stages and currently present significant barriers to entry for scientific users. In this article we describe a variety of platforms, as well as sensor capabilities, and identify advantages of each as relevant to the demands of users in the scientific research sector. We also briefly discuss the current state of regulations affecting UAS operations, with the purpose of informing the scientific community about this developing technology whose potential for revolutionizing natural science observations is similar to those transformations that GIS and GPS brought to the community two decades ago. Full article

Advanced Land Observing Satellite (ALOS) Phased Array L-band type Synthetic Aperture Radar (PALSAR) backscatter images with 50 m pixel size (strip images) at HV-polarization were used to map clear-cuts at a regional and national level in Sweden. For a set of 31 clear-cuts, on average 59.9% of the pixels within each clear-cut were correctly detected. When compared with a one-pixel edge-eroded version of the reference dataset, the accuracy increased to 88.9%. With respect to statistics from the Swedish Forest Agency, county-wise clear-felled areas were underestimated by the ALOS PALSAR dataset (between 25% and 60%) due to the coarse resolution. When compared with statistics from the Swedish National Forest Inventory, the discrepancies were larger, partly due to the estimation errors from the plot-wise forest inventory data. In Sweden, for the time frame of 2008–2010, the total area felled was estimated to be 140,618 ha, 172,532 ha and 194,586 ha using data from ALOS PALSAR, the Swedish Forest Agency and the Swedish National Forest Inventory, respectively. ALOS PALSAR strip images at HV-polarization appear suitable for detection of clear-felled areas at a national level; nonetheless, the pixel size of 50 m is a limiting factor for accurate delineation of clear-felled areas. Full article

The Ocean Color Monitor (OCM) provides radiance measurements in eight visible and near-infrared bands, similar to the Sea-viewing Wide Field-of-View Sensor (SeaWiFS) but with higher spatial resolution. For small- to moderate-sized coastal lakes and estuaries, where the 1 × 1 km spatial resolution of SeaWiFS is inadequate, the OCM provides a good alternative because of its higher spatial resolution (240 × 360 m) and an exact repeat coverage of every two days. This paper describes a detailed step-by-step atmospheric correction procedure for OCM data applicable to coastal Case 2 waters. This development was necessary as accurate results could not be obtained for our Case 2 water study area in coastal Louisiana with OCM data by using existing atmospheric correction software packages. In addition, since OCM-retrieved radiances were abnormally low in the blue wavelength region, a vicarious calibration procedure was developed. The results of our combined vicarious calibration and atmospheric correction procedure for OCM data were compared with the results from the SeaWiFS Data Analysis System (SeaDAS) software package outputs for SeaWiFS and OCM data. For Case 1 waters, our results matched closely with SeaDAS results. For Case 2 waters, our results demonstrated closure with in situ radiometric measurements, while SeaDAS produced negative normalized water leaving radiance (_nL_w) and remote sensing reflectance (R_rs). In summary, our procedure resulted in valid _nL_w and R_rs values for Case 2 waters using OCM data, providing a reliable method for retrieving useful _nL_w and R_rs values which can be used to develop ocean color algorithms for in-water substances (e.g., pigments, suspended sediments, chromophoric dissolved organic matter, etc.) at relatively high spatial resolution in regions where other software packages and sensors such as SeaWiFS and Moderate Resolution Imaging Spectrometer (MODIS) have proven unsuccessful. The method described here can be applied to other sensors such as OCM-2 or other Case 2 water areas. Full article

Individual tree species identification is important for urban forest inventory and ecology management. Recent advances in remote sensing technologies facilitate more detailed estimation of individual urban tree characteristics. This study presents an approach to improve the classification of individual tree species via longitudinal profiles from very high spatial resolution airborne imagery. The longitudinal profiles represent the side view tree shape, which play a very important role in individual tree species on-site identification. Decision tree classification was employed to conduct the final classification result. Using this profile approach, six major species (Maple, Ash, Birch, Oak, Spruce, Pine) of trees on the York University (Ontario, Canada) campus were successfully identified. Two decision trees were constructed, one knowledge-based and one derived from gain ratio criteria. The classification accuracy achieved were 84% and 86%, respectively. Full article

The objective of this study was to determine whether leaf area index (LAI) in temperate mixed forests is best estimated using multiple-return airborne laser scanning (lidar) data or dual-band, single-pass interferometric synthetic aperture radar data (from GeoSAR) alone, or both in combination. In situ measurements of LAI were made using the LiCor LAI-2000 Plant Canopy Analyzer on 61 plots (21 hardwood, 36 pine, 4 mixed pine hardwood; stand age ranging from 12-164 years; mean height ranging from 0.4 to 41.2 m) in the Appomattox-Buckingham State Forest, Virginia, USA. Lidar distributional metrics were calculated for all returns and for ten one meter deep crown density slices (a new metric), five above and five below the mode of the vegetation returns for each plot. GeoSAR metrics were calculated from the X-band backscatter coefficients (four looks) as well as both X- and P-band interferometric heights and magnitudes for each plot. Lidar metrics alone explained 69% of the variability in LAI, while GeoSAR metrics alone explained 52%. However, combining the lidar and GeoSAR metrics increased the R² to 0.77 with a CV-RMSE of 0.42. This study indicates the clear potential for X-band backscatter and interferometric height (both now available from spaceborne sensors), when combined with small-footprint lidar data, to improve LAI estimation in temperate mixed forests. Full article

The cost effective monitoring of habitats and their biodiversity remains a challenge to date. Earth Observation (EO) has a key role to play in mapping habitat and biodiversity in general, providing tools for the systematic collection of environmental data. The recent GEO-BON European Biodiversity Observation Network project (EBONE) established a framework for an integrated biodiversity monitoring system. Underlying this framework is the idea of integrating in situ with EO and a habitat classification scheme based on General Habitat Categories (GHC), designed with an Earth Observation-perspective. Here we report on EBONE work that explored the use of NDVI-derived phenology metrics for the identification and mapping of Forest GHCs. Thirty-one phenology metrics were extracted from MODIS NDVI time series for Europe. Classifications to discriminate forest types were performed based on a Random Forests™ classifier in selected regions. Results indicate that date phenology metrics are generally more significant for forest type discrimination. The achieved class accuracies are generally not satisfactory, except for coniferous forests in homogeneous stands (77–82%). The main causes of low classification accuracies were identified as (i) the spatial resolution of the imagery (250 m) which led to mixed phenology signals; (ii) the GHC scheme classification design, which allows for parcels of heterogeneous covers, and (iii) the low number of the training samples available from field surveys. A mapping strategy integrating EO-based phenology with vegetation height information is expected to be more effective than a purely phenology-based approach. Full article

A filtering algorithm is proposed that accurately extracts ground data from airborne light detection and ranging (LiDAR) measurements and generates an estimated digital terrain model (DTM). The proposed algorithm utilizes planar surface features and connectivity with locally lowest points to improve the extraction of ground points (GPs). A slope parameter used in the proposed algorithm is updated after an initial estimation of the DTM, and thus local terrain information can be included. As a result, the proposed algorithm can extract GPs from areas where different degrees of slope variation are interspersed. Specifically, along roads and streets, GPs were extracted from urban areas, from hilly areas such as forests, and from flat area such as riverbanks. Validation using reference data showed that, compared with commercial filtering software, the proposed algorithm extracts GPs with higher accuracy. Therefore, the proposed filtering algorithm effectively generates DTMs, even for dense urban areas, from airborne LiDAR data. Full article

This study explores a method to classify seven tropical rainforest tree species from full-range (400–2,500 nm) hyperspectral data acquired at tissue (leaf and bark), pixel and crown scales using laboratory and airborne sensors. Metrics that respond to vegetation chemistry and structure were derived using narrowband indices, derivative- and absorption-based techniques, and spectral mixture analysis. We then used the Random Forests tree-based classifier to discriminate species with minimally-correlated, importance-ranked metrics. At all scales, best overall accuracies were achieved with metrics derived from all four techniques and that targeted chemical and structural properties across the visible to shortwave infrared spectrum (400–2500 nm). For tissue spectra, overall accuracies were 86.8% for leaves, 74.2% for bark, and 84.9% for leaves plus bark. Variation in tissue metrics was best explained by an axis of red absorption related to photosynthetic leaves and an axis distinguishing bark water and other chemical absorption features. Overall accuracies for individual tree crowns were 71.5% for pixel spectra, 70.6% crown-mean spectra, and 87.4% for a pixel-majority technique. At pixel and crown scales, tree structure and phenology at the time of image acquisition were important factors that determined species spectral separability. Full article

Time series of images are required to extract and separate information on vegetation change due to phenological cycles, inter-annual climatic variability, and long-term trends. While images from the Landsat Thematic Mapper (TM) sensor have the spatial and spectral characteristics suited for mapping a range of vegetation structural and compositional properties, its 16-day revisit period combined with cloud cover problems and seasonally limited latitudinal range, limit the availability of images at intervals and durations suitable for time series analysis of vegetation in many parts of the world. Landsat Image Time Series (LITS) is defined here as a sequence of Landsat TM images with observations from every 16 days for a five-year period, commencing on July 2003, for a Eucalyptus woodland area in Queensland, Australia. Synthetic Landsat TM images were created using the Spatial and Temporal Adaptive Reflectance Fusion Model (STARFM) algorithm for all dates when images were either unavailable or too cloudy. This was done using cloud-free scenes and a MODIS Nadir BRDF Adjusted Reflectance (NBAR) product. The ability of the LITS to measure attributes of vegetation phenology was examined by: (1) assessing the accuracy of predicted image-derived Foliage Projective Cover (FPC) estimates using ground-measured values; and (2) comparing the LITS-generated normalized difference vegetation index (NDVI) and MODIS NDVI (MOD13Q1) time series. The predicted image-derived FPC products (value ranges from 0 to 100%) had an RMSE of 5.6. Comparison between vegetation phenology parameters estimated from LITS-generated NDVI and MODIS NDVI showed no significant difference in trend and less than 16 days (equal to the composite period of the MODIS data used) difference in key seasonal parameters, including start and end of season in most of the cases. In comparison to similar published work, this paper tested the STARFM algorithm in a new (broadleaf) forest environment and also demonstrated that the approach can be used to form a time series of Landsat TM images to study vegetation phenology over a number of years. Full article