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Open AccessCommunication
Viruses 2016, 8(3), 66; doi:10.3390/v8030066

Linking Virus Genomes with Host Taxonomy

1
Institute for Chemical Research, Kyoto University, Uji, Kyoto 611-0011, Japan
2
SGI Japan, Ltd., Yebisu Garden Place Tower 31F, 4-20-3 Ebisu Shibuya-ku, Tokyo 150-6031, Japan
3
Aix Marseille Université, CNRS, IGS UMR 7256, 13288 Marseille, France
*
Author to whom correspondence should be addressed.
Academic Editor: Eric O. Freed
Received: 15 December 2015 / Revised: 23 February 2016 / Accepted: 25 February 2016 / Published: 1 March 2016
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Abstract

Environmental genomics can describe all forms of organisms—cellular and viral—present in a community. The analysis of such eco-systems biology data relies heavily on reference databases, e.g., taxonomy or gene function databases. Reference databases of symbiosis sensu lato, although essential for the analysis of organism interaction networks, are lacking. By mining existing databases and literature, we here provide a comprehensive and manually curated database of taxonomic links between viruses and their cellular hosts. View Full-Text
Keywords: virus-host interactions; database; taxonomy; GenomeNet; KEGG; genomes virus-host interactions; database; taxonomy; GenomeNet; KEGG; genomes
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MDPI and ACS Style

Mihara, T.; Nishimura, Y.; Shimizu, Y.; Nishiyama, H.; Yoshikawa, G.; Uehara, H.; Hingamp, P.; Goto, S.; Ogata, H. Linking Virus Genomes with Host Taxonomy. Viruses 2016, 8, 66.

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