Next Article in Journal
Drastic Attenuation of Pseudomonas aeruginosa Pathogenicity in a Holoxenic Mouse Experimental Model Induced by Subinhibitory Concentrations of Phenyllactic acid (PLA)
Previous Article in Journal
DNA-Binding Study of Tetraaqua-bis(p-nitrobenzoato)cobalt(II) Dihydrate Complex: [Co(H2O)4(p-NO2C6H4COO)2]·2H2O
Int. J. Mol. Sci. 2007, 8(7), 572-582; doi:10.3390/i8070572
Article

Electronegativity Equalization Method: Parameterization and Validation for Large Sets of Organic, Organohalogene and Organometal Molecule

, , ,  and *
National Centre for Biomolecular Research, Faculty of Science, Masaryk University, Kotlářská 2, 61137 Brno, Check Republic
* Author to whom correspondence should be addressed.
Received: 10 May 2007 / Revised: 6 June 2007 / Accepted: 14 June 2007 / Published: 3 July 2007
View Full-Text   |   Download PDF [204 KB, uploaded 19 June 2014]

Abstract

The Electronegativity Equalization Method (EEM) is a fast approach for chargecalculation. A challenging part of the EEM is the parameterization, which is performedusing ab initio charges obtained for a set of molecules. The goal of our work was to performthe EEM parameterization for selected sets of organic, organohalogen and organometalmolecules. We have performed the most robust parameterization published so far. The EEMparameterization was based on 12 training sets selected from a database of predicted 3Dstructures (NCI DIS) and from a database of crystallographic structures (CSD). Each setcontained from 2000 to 6000 molecules. We have shown that the number of molecules inthe training set is very important for quality of the parameters. We have improved EEMparameters (STO-3G MPA charges) for elements that were already parameterized,specifically: C, O, N, H, S, F and Cl. The new parameters provide more accurate chargesthan those published previously. We have also developed new parameters for elements thatwere not parameterized yet, specifically for Br, I, Fe and Zn. We have also performedcrossover validation of all obtained parameters using all training sets that included relevantelements and confirmed that calculated parameters provide accurate charges.
Keywords: Charge distribution; Electronegativity Equalization Method; Parameterization; Organohalogenes; Organometals. Charge distribution; Electronegativity Equalization Method; Parameterization; Organohalogenes; Organometals.
This is an open access article distributed under the Creative Commons Attribution License which permits unrestricted use, distribution, and reproduction in any medium, provided the original work is properly cited.

Share & Cite This Article

Export to BibTeX |
EndNote


MDPI and ACS Style

Varekova, R.S.; Jirouskova, Z.; Vanek, J.; Suchomel, S.; Koca, J. Electronegativity Equalization Method: Parameterization and Validation for Large Sets of Organic, Organohalogene and Organometal Molecule. Int. J. Mol. Sci. 2007, 8, 572-582.

View more citation formats

Related Articles

Article Metrics

Comments

Citing Articles

[Return to top]
Int. J. Mol. Sci. EISSN 1422-0067 Published by MDPI AG, Basel, Switzerland RSS E-Mail Table of Contents Alert