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<front>
<journal-meta>
<journal-id journal-id-type="publisher-id">ijms</journal-id>
<journal-title>International Journal of Molecular Sciences</journal-title>
<abbrev-journal-title>Int. J. Mol. Sci.</abbrev-journal-title>
<issn pub-type="epub">1422-0067</issn>
<publisher>
<publisher-name>Molecular Diversity Preservation International (MDPI)</publisher-name></publisher></journal-meta>
<article-meta>
<article-id pub-id-type="doi">10.3390/ijms13021284</article-id>
<article-id pub-id-type="publisher-id">ijms-13-01284</article-id>
<article-categories>
<subj-group>
<subject>Article</subject></subj-group></article-categories>
<title-group>
<article-title>Imidazolines as Non-Classical Bioisosteres of <italic>N</italic>-Acyl Homoserine Lactones and <italic>Quorum Sensing</italic> Inhibitors</article-title></title-group>
<contrib-group>
<contrib contrib-type="author">
<name><surname>Reyes-Arellano</surname><given-names>Alicia</given-names></name><xref ref-type="aff" rid="af1-ijms-13-01284">1</xref><xref ref-type="corresp" rid="c1-ijms-13-01284">*</xref></contrib>
<contrib contrib-type="author">
<name><surname>Bucio-Cano</surname><given-names>Alejandro</given-names></name><xref ref-type="aff" rid="af1-ijms-13-01284">1</xref></contrib>
<contrib contrib-type="author">
<name><surname>Montenegro-Sustaita</surname><given-names>Mabel</given-names></name><xref ref-type="aff" rid="af1-ijms-13-01284">1</xref></contrib>
<contrib contrib-type="author">
<name><surname>Curiel-Quesada</surname><given-names>Everardo</given-names></name><xref ref-type="aff" rid="af2-ijms-13-01284">2</xref></contrib>
<contrib contrib-type="author">
<name><surname>Salgado-Zamora</surname><given-names>Héctor</given-names></name><xref ref-type="aff" rid="af1-ijms-13-01284">1</xref></contrib></contrib-group>
<aff id="af1-ijms-13-01284">
<label>1</label>Department of Organic Chemistry, National Polytechnic Institute, National School of Biological Sciences, Carpio y Plan de Ayala S/N, Colonia Santo Tomás, 11340 México, D.F., Mexico; E-Mails: <email>abc_pp@hotmail.com</email> (A.B.-C.); <email>mabel_montenegro@hotmail.com</email> (M.M.-S.); <email>hsalgado47@hotmail.com</email> (H.S.-Z.)</aff>
<aff id="af2-ijms-13-01284">
<label>2</label>Department of Biochemistry, National Polytechnic Institute, National School of Biological Sciences, Carpio y Plan de Ayala S/N, Colonia Santo Tomás, 11340 México, D.F., Mexico; E-Mail: <email>ecqmixcoacdf@gmail.com</email></aff>
<author-notes>
<corresp id="c1-ijms-13-01284">
<label>*</label>Author to whom correspondence should be addressed; E-Mail: <email>areyesarellano@yahoo.com.mx</email>; Tel.: +55-57-29-60-00 ext. 62526; Fax: +55-57-29-60-00 ext. 62526.</corresp></author-notes>
<pub-date pub-type="collection">
<year>2012</year></pub-date>
<pub-date pub-type="epub">
<day>25</day>
<month>1</month>
<year>2012</year></pub-date>
<volume>13</volume>
<issue>2</issue>
<fpage>1284</fpage>
<lpage>1299</lpage>
<history>
<date date-type="received">
<day>02</day>
<month>11</month>
<year>2011</year></date>
<date date-type="rev-recd">
<day>06</day>
<month>1</month>
<year>2012</year></date>
<date date-type="accepted">
<day>10</day>
<month>1</month>
<year>2012</year></date></history>
<permissions>
<copyright-statement>© 2012 by the authors; licensee Molecular Diversity Preservation International, Basel, Switzerland.</copyright-statement>
<copyright-year>2012</copyright-year>
<license license-type="open-access" xlink:href="http://creativecommons.org/licenses/by/3.0">
<p>This article is an open-access article distributed under the terms and conditions of the Creative Commons Attribution license (http://creativecommons.org/licenses/by/3.0/).</p></license></permissions>
<abstract>
<p>A series of selected 2-substituted imidazolines were synthesized in moderate to excellent yields by a modification of protocols reported in the literature. They were evaluated as potential non-classical bioisosteres of AHL with the aim of counteracting bacterial pathogenicity. Imidazolines <bold>18a</bold>, <bold>18e</bold> and <bold>18f</bold> at various concentrations reduced the violacein production by <italic>Chromobacterium violaceum</italic>, suggesting an <italic>anti-quorum</italic> sensing profile against Gram-negative bacteria. Imidazoline <bold>18b</bold> did not affect the production of violacein, but had a bacteriostatic effect at 100 μM and a bactericidal effect at 1 mM. Imidazoline <bold>18a</bold> bearing a hexyl phenoxy moiety was the most active compound of the series, rendering a 72% inhibitory effect of <italic>quorum sensing</italic> at 100 μM. Imidazoline <bold>18f</bold> bearing a phenyl nonamide substituent presented an inhibitory effect on <italic>quorum sensing</italic> at a very low concentration (1 nM), with a reduction percentage of 28%. This compound showed an irregular performance, decreasing inhibition at concentrations higher than 10 μM, until reaching 100 μM, at which concentration it increased the inhibitory effect with a 49% reduction percentage. When evaluated on <italic>Serratia marcescens</italic>, compound <bold>18f</bold> inhibited the production of prodigiosin by 40% at 100 μM.</p></abstract>
<kwd-group>
<kwd>imidazoline synthesis</kwd>
<kwd><italic>quorum sensing</italic></kwd>
<kwd><italic>Chromobacterium violaceum</italic></kwd>
<kwd>AHL bioisosteres</kwd></kwd-group></article-meta></front>
<body>
<sec sec-type="intro">
<title>1. Introduction</title>
<p>Since the discovery of penicillin by Alexander Fleming in 1928 [<xref ref-type="bibr" rid="b1-ijms-13-01284">1</xref>], numerous antibiotics have been introduced for the treatment of once fatal infections, many of which have spread worldwide. At first, the rapid discovery of new antibiotics led to a sufficient drug repertoire that could respond to most antibacterial requirements. However, since then the development of bacterial antibiotic resistance has become a major health issue with multifactorial causes, including the extensive and indiscriminate use of antibiotics, auto-medication, and an increased use of indwelling medical devices [<xref ref-type="bibr" rid="b2-ijms-13-01284">2</xref>]. The latter provide a propitious environment for the growth of biofilms [<xref ref-type="bibr" rid="b2-ijms-13-01284">2</xref>,<xref ref-type="bibr" rid="b3-ijms-13-01284">3</xref>], which are both tenacious and highly resistant to antimicrobial treatment.</p>
<p>The magnitude of the problem demands new strategies. One of the options for overcoming bacterial resistance consists in interrupting a recently discovered pathway of bacterial communication [<xref ref-type="bibr" rid="b4-ijms-13-01284">4</xref>–<xref ref-type="bibr" rid="b6-ijms-13-01284">6</xref>], termed <italic>quorum sensing</italic> (QS) [<xref ref-type="bibr" rid="b7-ijms-13-01284">7</xref>]. This communication, which regulates a variety of physiological functions, takes place through small peptides in Gram-positive bacteria, and through small molecules, such as <italic>N</italic>-acyl homoserine lactones (AHL, <bold>1</bold>) [<xref ref-type="bibr" rid="b4-ijms-13-01284">4</xref>,<xref ref-type="bibr" rid="b5-ijms-13-01284">5</xref>], in Gram-negative bacteria. Presumably to avoid alerting the host’s immune system to the presence of bacteria, <italic>quorum sensing</italic> delays virulence factor production until the cell number is high enough such that secretion of virulence factors will result in a productive infection. Therefore, the interruption of <italic>quorum sensing</italic> in Gram-negative bacteria in order to disable this communication system [<xref ref-type="bibr" rid="b2-ijms-13-01284">2</xref>], through the synthesis of bioisosteres [<xref ref-type="bibr" rid="b8-ijms-13-01284">8</xref>,<xref ref-type="bibr" rid="b9-ijms-13-01284">9</xref>], has become a focus of research.</p>
<p>In the search of new <italic>quorum sensing</italic> inhibitors against Gram-negative bacteria, AHL has been the lead compound in various studies and different strategies have been adopted. The main structural modifications on AHL to obtain antagonist and agonist bioisosteres may be summarized as follows (<xref ref-type="fig" rid="f1-ijms-13-01284">Figure 1</xref>): (a) Modification of the AHL aliphatic chain mediated by the introduction of an S atom (<bold>2</bold>) [<xref ref-type="bibr" rid="b10-ijms-13-01284">10</xref>], SO group (<bold>3</bold>) [<xref ref-type="bibr" rid="b10-ijms-13-01284">10</xref>], or a ring in the Ω carbon [<xref ref-type="bibr" rid="b11-ijms-13-01284">11</xref>–<xref ref-type="bibr" rid="b13-ijms-13-01284">13</xref>] (<bold>4</bold>, <bold>5</bold>); (b) Substitution of the lactone ring O atom by S [<xref ref-type="bibr" rid="b14-ijms-13-01284">14</xref>] (<bold>6</bold>) or CH<sub>2</sub> (<bold>7</bold>) [<xref ref-type="bibr" rid="b15-ijms-13-01284">15</xref>]; and (c) Substitution of the lactone ring by another aliphatic ring (<italic>i.e.</italic>, cyclopentanol, cyclopentanone, cyclohexanol, cyclohexanone, <italic>etc.</italic>) (<bold>8</bold>, <bold>9</bold>, <bold>10</bold>, <bold>11</bold>) [<xref ref-type="bibr" rid="b16-ijms-13-01284">16</xref>]. However, in our opinion, all of these transformations imply classical bioisosterism [<xref ref-type="bibr" rid="b8-ijms-13-01284">8</xref>,<xref ref-type="bibr" rid="b9-ijms-13-01284">9</xref>], and only a few examples of non-classical bioisosteres synthesis have been reported [<xref ref-type="bibr" rid="b17-ijms-13-01284">17</xref>,<xref ref-type="bibr" rid="b18-ijms-13-01284">18</xref>] (<xref ref-type="fig" rid="f2-ijms-13-01284">Figure 2</xref>).</p>
<p>Other strategies include: (a) Virtual screening of recognized drugs [<xref ref-type="bibr" rid="b19-ijms-13-01284">19</xref>] and random screening of compounds synthesized for other purposes [<xref ref-type="bibr" rid="b20-ijms-13-01284">20</xref>]; (b) Evaluation of plant extracts, such as the extract of <italic>Tremella fuciformis</italic> fruiting bodies, which showed <italic>quorum sensing</italic> inhibitory activity in <italic>Chromobacterium violaceum</italic> CV026 [<xref ref-type="bibr" rid="b21-ijms-13-01284">21</xref>,<xref ref-type="bibr" rid="b22-ijms-13-01284">22</xref>]. It is a fact that some positively active <italic>antiquorum sensing</italic> compounds do not have structural or electronic resemblance with natives AHLs [<xref ref-type="bibr" rid="b10-ijms-13-01284">10</xref>,<xref ref-type="bibr" rid="b23-ijms-13-01284">23</xref>], <xref ref-type="fig" rid="f3-ijms-13-01284">Figure 3</xref>.</p>
<p>The aim of the present work was to investigate a new type of non-classical bioisoster for the acyl homoserine lactone as a possible quorum sensing inhibitor. Therefore six new imidazoline derivatives were selected and evaluated as potential AHL antagonist bioisosteres [<xref ref-type="bibr" rid="b8-ijms-13-01284">8</xref>] in the violacein production of <italic>Chromobacterium violaceum</italic>. Selection of <italic>C. violaceum</italic>, a Gram-negative bacteria, was made considering the fact that the biosynthesis of violacein, violet pigment, is triggered by <italic>n</italic>-hexanoyl-L-<italic>N</italic>-acyl homoserine lactone (C6AHL), <italic>quorum sensing</italic> dependent [<xref ref-type="bibr" rid="b24-ijms-13-01284">24</xref>] and easily detectable by means of spectrophotometry.</p></sec>
<sec sec-type="results|discussion">
<title>2. Results and Discussion</title>
<sec sec-type="methods">
<title>2.1. Bioisosteric Design</title>
<p>The design of a new type of non-classical bioisosteres consisted of the substitution of the lactone ring in the acyl homoserine lactone by an imidazoline ring, this representing a bioisosteric replacement. The length of the aliphatic chain was not drastically modified, but in four of the compounds the amide functional group was replaced by an ether group. A phenyl ring was introduced to serve as a tether of the imidazoline and the aliphatic chain, with no asymmetric center. As is known, some efficient <italic>quorum sensing</italic> antagonists lack the asymmetric center [<xref ref-type="bibr" rid="b15-ijms-13-01284">15</xref>]. In order to observe the electronic effects on the biological activity of <italic>C. violaceum</italic>, the <italic>O</italic>-aliphatic chain at positions <italic>meta</italic> and <italic>para</italic> on the phenyl ring was examined.</p></sec>
<sec>
<title>2.2. Chemistry</title>
<p>The synthesis of the imidazolines was achieved in two steps. In the first stage, the synthetic intermediates <bold>17a</bold>–<bold>17d</bold> were prepared by alkylation of 4-hydroxybenzaldehyde, and the amides <bold>17e</bold> and <bold>17f</bold> were obtained by reaction of the corresponding carboxylic acids with 4-aminobenzonitrile (<xref ref-type="table" rid="t1-ijms-13-01284">Table 1</xref>). Cyclization of the required imidazolines <bold>18a</bold>–<bold>18d</bold> was achieved with ethylenediamine and iodine, while imidazolines <bold>18e</bold> and <bold>18f</bold> were synthesized with ethylenediamine and CS<sub>2</sub> using MW (<xref ref-type="table" rid="t2-ijms-13-01284">Table 2</xref>).</p>
<p>Synthetic intermediates <bold>17a</bold>–<bold>17d</bold> were prepared [<xref ref-type="bibr" rid="b25-ijms-13-01284">25</xref>] in good yields. Amide derivative <bold>17e</bold> is commercially available, but both <bold>17e</bold> and <bold>17f</bold> were prepared using MW as a source of energy in an adaptation of the methodology described in the literature [<xref ref-type="bibr" rid="b26-ijms-13-01284">26</xref>].</p>
<p>Imidazoline derivative <bold>18a</bold> has been previously prepared in 75% yield using the corresponding alkyloxybenzonitrile and inner salt <italic>p</italic>-CH<sub>3</sub>-C<sub>6</sub>H<sub>4</sub>SO<sub>3</sub>H<sub>3</sub>NCH<sub>2</sub>CH<sub>2</sub>NH<sub>2</sub> [<xref ref-type="bibr" rid="b27-ijms-13-01284">27</xref>]. Imidazoline derivative <bold>18b</bold> was prepared in 29% yield [<xref ref-type="bibr" rid="b28-ijms-13-01284">28</xref>]. In contrast, these compounds and the new ones <bold>18c</bold>–<bold>18d</bold> were successfully prepared by us in quantitative yields via an adaptation of the protocol described by Fujioka [<xref ref-type="bibr" rid="b29-ijms-13-01284">29</xref>]. Imidazoline derivatives <bold>18e</bold> and <bold>18f</bold> were synthesized in moderate yields by an adaptation of a procedure described in the literature [<xref ref-type="bibr" rid="b30-ijms-13-01284">30</xref>]. All compounds were characterized by spectroscopic methods. The spectroscopy of known compounds in the present work was in agreement with that reported in the literature [<xref ref-type="bibr" rid="b28-ijms-13-01284">28</xref>,<xref ref-type="bibr" rid="b31-ijms-13-01284">31</xref>,<xref ref-type="bibr" rid="b32-ijms-13-01284">32</xref>].</p>
<p>It is worth mentioning that imidazolines <bold>18a</bold> and <bold>18b</bold> were evaluated as monoxidase inhibitors with antidepressant activity, but were not highly active [<xref ref-type="bibr" rid="b28-ijms-13-01284">28</xref>]. Imidazoline <bold>18a</bold> was evaluated unsuccessfully</p></sec>
<sec>
<title>2.3. Biology</title>
<sec>
<title>2.3.1. Evaluation of the Imidazoline Derivatives <bold>18a–18f</bold> on <italic>Chromobacterium violaceum</italic> wt</title>
<p>Bioisosteres of the <italic>N</italic>-acyl homoserine lactone, <bold>18a–18f</bold> were evaluated at concentrations between 100 pM and 100 μM (<xref ref-type="fig" rid="f4-ijms-13-01284">Figure 4</xref>). Imidazoline <bold>18a</bold> had an effect on the production of violacein only at a concentration of 100 μM, without affecting the growth of the bacteria. Concentrations of 25, 50, 75, 90 and 100 μM of compound <bold>18a</bold> were tested in order to calculate the IC50 value, which turned out to be 90.9 μM. This compound also inhibited bacteria growth at higher concentrations (data not shown). Compound <bold>18b</bold> did not affect the production of violacein, but it had a bacteriostatic effect at 100 μM and a bactericidal effect at a 1 mM concentration (data for the latter is not shown). The graph (<xref ref-type="fig" rid="f4-ijms-13-01284">Figure 4</xref>) shows an apparent inhibition between the concentrations 0.1 nM and 0.1 μM, but this effect was not statistically significant. Compounds <bold>18c</bold> and <bold>18d</bold> did not have any effect on violacein production in the time period and concentrations employed in the evaluation, except for the growth inhibition exerted by compound <bold>18d</bold> at a concentration of 100 μM. Bioisoster <bold>18f</bold> showed an inhibitory effect on violacein production starting at a concentration of 1 nM, showing an irregular performance where the highest inhibition, 49%, was observed at 100 μM (<xref ref-type="fig" rid="f4-ijms-13-01284">Figure 4</xref>). Compound <bold>18e</bold> showed a bimodal behavior, with an inhibitory effect only at 0.1 μM and 1 μM.</p></sec>
<sec>
<title>2.3.2. Effect of Compounds <bold>18a</bold>–<bold>18f</bold> on the Viability of <italic>Chromobacterium violaceum</italic> Wild Type</title>
<p>A viable count was made of those cultures that showed inhibition of pigment production in presence of the imidazolines under study, using the concentrations at which such activity was observed. After the evaluation, it was found that the number of CFU was without change compared with the respective control group. This clearly indicated that the inhibitory effect on the production of violacein is not due to a decrease in the number of bacteria, but instead to the effects of the test compounds.</p></sec>
<sec>
<title>2.3.3. Effects of the Imidazoline Derivatives on <italic>Chromobacterium violaceum</italic></title>
<p>Compounds <bold>18a</bold>, <bold>18e</bold> and <bold>18f</bold> showed an inhibitory effect on <italic>quorum sensing</italic>, evidenced by the reduction in violacein production. This was confirmed by the viable count, which showed that the number of CFU was without change compared with the respective control group. Compounds <bold>18e</bold> and <bold>18f</bold> gave a linear response only at initial concentrations of 0.0001–0.1 μM. At higher concentrations, the activity was lost or reduced, suggesting that the inhibition depends on the concentration and structure of the compound. Neither <bold>18e</bold> nor <bold>18f</bold> reached a 50% inhibition under the range of concentrations tested. Although the causes of this behavior are unknown, it is possible that bioisosteres stimulate the production of the pigment at high concentrations either by inducing compensatory conformational changes in the CviR receptor, or in an indirect way, such as by stimulating the synthesis of dye precursors. A non-linear event in <italic>QS</italic> evaluation of certain compounds was also observed by Martinelli and collaborators [<xref ref-type="bibr" rid="b33-ijms-13-01284">33</xref>]. They evaluated several furanones, bioisosteres of the furanones of <italic>Delisea pulchra</italic>, as inhibitors of the production of violacein. Martinelli concluded that the same compound may be an activator or inhibitor.</p>
<p>With compound <bold>18a</bold>, which has an ether moiety in the connector, inhibitory activity could have been the result of the imidazoline group acting as a bioisoster of the lactone ring, and the electronic conjugation of the ether with the imidazoline, conferring the latter nucleus a more basic character. Indeed, it is known that the production of violaceine is sensible to the basicity [<xref ref-type="bibr" rid="b23-ijms-13-01284">23</xref>]. However, it is clear that basicity is not the only important feature, since imidazoline <bold>18b</bold>, with similar electronic properties, did not present a statistically significant <italic>anti</italic>-<italic>quorum sensing</italic> activity.</p>
<p>The imidazolines that have the ether group at the <italic>meta</italic> position (<bold>18c</bold> and <bold>18d</bold>) in the connector did not present inhibitory activity on the production of violacein, which supports the importance of the electronic conjugation. The <italic>anti</italic>-<italic>quorum sensing</italic> activity shown by the compounds <bold>18e</bold> and <bold>18f</bold> confirms that the imidazoline ring acts as a bioisoster of the lactone ring. In this case we consider that factors like the conservation of the amide group, the length of the chain, and the conjugation between the amide moiety and the imidazoline group contributed to the activity obtained. Remarkably, compound <bold>18f</bold> showed initial activity at the lowest concentration so far reported to inhibit <italic>C. violaceum</italic> QS, 1 nM.</p>
<p>Compound <bold>18f</bold> was more active than the more promising <bold>18e</bold>, which contains the same chain length as the acyl group in the natural AHL. Williams [<xref ref-type="bibr" rid="b34-ijms-13-01284">34</xref>] found that as the aliphatic chain length in the majority of the AHL of Gram-negative bacteria increases, the compounds change from activators to inhibitors on the production of violacein.</p>
<p>The <italic>antiquorum sensing</italic> activity of imidazolines <bold>18a</bold>, <bold>18e</bold> and <bold>18f</bold> can be compared with other reports in the literature. Imidazoline <bold>18a</bold>, which showed the highest <italic>antiquorum sensing</italic> activity of all bioisosteres tested in this work (at 100 μM), rendered 71% inhibition. In contrast, 2-(4′-chlorophenoxy)-<italic>N</italic>-butanoyl homoserine lactone <bold>4</bold>, which is claimed to be the most active analog of AHL synthesized so far [<xref ref-type="bibr" rid="b11-ijms-13-01284">11</xref>], gave a total inhibition of violacein at 10<sup>−4</sup> M. The activity of compound <bold>18a</bold> could also be compared with some furanones, which at a concentration of 10<sup>−4</sup> M showed an inhibition at around 95%, as reported by Martinelli [<xref ref-type="bibr" rid="b33-ijms-13-01284">33</xref>].</p>
<p>Imidazoline <bold>18e</bold> showed the initial inhibition of QS at 0.1 μM (100 nM), rendering a 47% inhibition. At 1 μM this same compound yielded a 42% inhibition of the dye. By contrast, <italic>N</italic>-decanoyl-L-homoserine lactone (DHL) was the most active compound of a reported series of acyl homoserine lactones, showing a 51% inhibition of the dye at 100 nM [<xref ref-type="bibr" rid="b34-ijms-13-01284">34</xref>]. Meanwhile, imidazoline <bold>18f</bold> showed the initial inhibition at 1 nM (the lowest concentration of this series), resulting in a 14% inhibition of QS, and at 100 μM rendered a 49% inhibition.</p>
<p>To summarize, imidazoline <bold>18f</bold> shows initial inhibitory activity of <italic>QS</italic> at a very low concentration (1 nM), and its highest activity (49% inhibition) at 100 μM. On the other hand, imidazoline <bold>18a</bold> shows the highest activity (71% inhibition) of this series at 100 μM. Thus, imidazoline <bold>18a</bold> and <bold>18f</bold> are very promising lead compounds for further research. Current structural modifications on <bold>18a</bold> and <bold>18f</bold> are under way to improve the <italic>anti QS</italic> activity.</p></sec>
<sec>
<title>2.3.4. Evaluation of <italic>N</italic>-[4-Phenyl-(imidazo-2-yl)]-nonamide on <italic>Serratia marcescens</italic> ATCC 8100</title>
<p>Due to the activity of compound <bold>18f</bold> on the production of violacein in <italic>Chromobacterium violaceum</italic>, this compound was evaluated on <italic>Serratia marcescens</italic>, a pathogenic Gram-negative bacteria found in nosocomial infections [<xref ref-type="bibr" rid="b35-ijms-13-01284">35</xref>]. <italic>Serratia marcescens</italic> uses several types of signaling molecules with the <italic>N</italic>-acyl homoserine lactone core [<xref ref-type="bibr" rid="b36-ijms-13-01284">36</xref>] for the synthesis of prodigiosin, a red dye that is regulated in a <italic>QS</italic>-dependent manner (<xref ref-type="fig" rid="f5-ijms-13-01284">Figure 5</xref>).</p>
<p>Compound <bold>18f</bold> inhibited the production of prodigiosin at practically every concentration tested (<xref ref-type="fig" rid="f6-ijms-13-01284">Figure 6</xref>). At 10 μM it inhibited 20% of the dye production and at 100 μM inhibited 40%. When testing other concentrations (50, 150, 200, 250 and 300 μM) of compound <bold>18f</bold>, the IC50 was found to be 106.5 μM. The inhibition of prodigiosin by <bold>18f</bold> was 15.7% at a concentration of 50 μM, 51.6% at 150 μM, 55.8% at 200 μM, 56.3% at 250 μM, and 64.8% at 300 μM. The growth of the bacteria was not affected in any case. In contrast 10 μM of nonanoyl cyclopentyl amide (<bold>7</bold>) rendered only 10% of prodigiosin inhibition, and 200 μM gave 85% [<xref ref-type="bibr" rid="b15-ijms-13-01284">15</xref>].</p></sec></sec></sec>
<sec>
<title>3. Experimental Section</title>
<sec>
<title>3.1. Experimental Chemical Section</title>
<p>Melting points were determined on an Electrothermal melting point apparatus and are uncorrected. Infrared spectra were recorded on a Perkin Elmer 599-B spectrophotometer. NMR spectra were recorded with a Varian Mercury 300 MHz or NMR on a Varian 500 spectrometer.</p>
<p>The chemical shifts (δ) are referenced to internal (CH<sub>3</sub>)<sub>4</sub>Si (δ<sup>1</sup>H = 0, δ<sup>13</sup>C = 0). The electron ionization (EI) mass spectra (70 eV) were recorded using a Hewlett Packard HP-5998A spectrometer. HRMS was determined using a JEOL-JSM-GC mateII.</p>
<p><italic>p</italic>-Hydroxybenzaldehyde, benzonitrile and other compounds used to synthesis were purchased from Sigma-Aldrich and used without further purification except ethylenediamine, which was distillated over sodium.</p>
<sec>
<title>3.1.1. General Procedure for the Synthesis of 4-Alkyloxybenzaldehydes [<xref ref-type="bibr" rid="b25-ijms-13-01284">25</xref>]</title>
<p>To a solution of 1.0 equivalent (eq) of the corresponding hydroxybenzaldehyde in acetone, K<sub>2</sub>CO<sub>3</sub> (1.5 eq) was added and the mixture stirred for 1 h at 40 °C. Then 1.1 eq of the corresponding alkylhalide was added and the mixture was refluxed for 15 h under constant stirring. Progress of the reaction was monitored by TLC (hexane:EtOAc 8:2). Water was added to the reaction mixture and extracted with ether (3 × 20 mL). The organic extracts were combined and washed with 5% NaCl solution, dried over Na<sub>2</sub>SO<sub>4</sub> anh. and the solvent removed under vacuum to dryness. The crude product was purified by chromatography on SiO<sub>2</sub> using a gradient of a mixture hexane:EtOAc, giving the pure compounds as a colorless oil. The purified compounds were further characterized by common spectroscopic methods.</p>
<p>4-Hexyloxybenzaldehyde (<bold>17a</bold>) [<xref ref-type="bibr" rid="b31-ijms-13-01284">31</xref>]. IR (KBr): <italic>υ</italic> = 2931 cm<sup>−1</sup>, 2858, 2734, 1695, 832; <sup>1</sup>H NMR (CDCl<sub>3</sub>): <italic>δ</italic> = 9.86 (s, 1H, CHO), 7.40 (AA′BB′, 4H, Ph), 4.02 (t, 2H, OCH<sub>2</sub>), 1.82 (m, 2H, H-7), 1.35 (m, 6H, H-8, H-9, H-10), 0.91 (t, 3H, CH<sub>3</sub>); <sup>13</sup>C NMR (CDCl<sub>3</sub>): <italic>δ</italic> = 190.6 (CHO), 164.1 (C-5), 131.8 (C-3), 129.5 (C-2), 114.6 (C-4), 68.2 (C-6), 31.1 (C-7), 28.9 (C-8), 25.5 (C-9), 22.4 (C-10), 13.9 (C-11).</p>
<p>4-Nonyloxybenzaldehyde (<bold>17b</bold>) [<xref ref-type="bibr" rid="b32-ijms-13-01284">32</xref>]. IR (KBr): <italic>υ</italic> = 2989 cm<sup>−1</sup>, 2868, 2736, 1694, 830; <sup>1</sup>H NMR (CDCl<sub>3</sub>): <italic>δ</italic> = 9.90 (s, 1H CHO), 7.38 (AA′BB′ 4H, Ph), 4.0 (t, 2H, H-6), 1.79 (m, 2H, H-7), 1.27 (m, 12H, H-8, H-9, H-10, H-11, H-12, H-13), 0.88 (t, 3H, CH<sub>3</sub>); <sup>13</sup>C NMR (CDCl<sub>3</sub>): <italic>δ</italic> = 190.3 (CHO), 164.0 (C-5), 131.7 (C-3), 129.5 (C-2), 114.5 (C-4), 68.1 (C-6), 31.7 (C-7), 29.3 (C-8), 29.2 (C-9), 29.1 (C-10), 28.9 (C-11), 25.8 (C-12), 22.5 (C-13), 13.9 (C-14).</p></sec>
<sec>
<title>3.1.2. General Procedure for the Synthesis of 3-Alkylbenzaldehydes</title>
<p>In a pressure tube were added 1.0 eq of 3-hydroxy benzaldehyde, 2 eq of K<sub>2</sub>CO<sub>3</sub> and THF, and then 2.0 eq of triethylamine and 1.1 eq of alkylbromide. The reaction mixture was stirred and heated at 120 °C for 10 h (TLC SiO<sub>2</sub> hexane:EtOAc 8:2). The reaction was cooled to r.t., water was added and extracted with ether 5 times. The organic phases were washed with 5% NaCl and dried over Na<sub>2</sub>SO<sub>4</sub> anh. The solvent was removed by a rotary evaporator. The crude products were purified by chromatography on silica gel (hexane:AcOEt gradient). The pure compounds were characterized by common spectroscopic methods.</p>
<p>3-Hexyloxybenzaldehyde (<bold>17c</bold>). IR (KBr): <italic>υ</italic> = 2931 cm<sup>−1</sup>, 2858, 2725, 1698, 1263, 785; <sup>1</sup>H NMR (CDCl<sub>3</sub>): <italic>δ</italic> = 9.98 (s, 1H, CHO), 7.44 (d, 2H, H-3, H-6), 7.43 (dd, 1H, H-7), 7.38 (dd, 1H, H-5), 4.0 (t, 2H, H-8), 1.80 (dt, 2H, H-9), 1.47 (m, 2H, H-10), 1.35 (m, 4H, H-11, H-12), 0.91 (t, 3H, CH<sub>3</sub>); <sup>13</sup>C NMR (CDCl<sub>3</sub>): <italic>δ</italic> = 192.2 (CHO), 159.6 (C-4), 137.78 (C-2), 129.9 (C-6), 123.3 (C-7), 121.9 (C-5), 112.6 (C-3), 68.2 (C-8), 31.5 (C-9), 29.0 (C-10), 25.6 (C-11), 22.6 (C-12), 14.0 (C-13).</p>
<p>3-Nonyloxybenzaldehyde (<bold>17d</bold>). IR (KBr): <italic>υ</italic> = 3068 cm<sup>−1</sup>, 2925, 2854, 2724, 1701, 1262, 786; <sup>1</sup>H NMR (CDCl<sub>3</sub>): <italic>δ</italic> = 9.93 (s, 1H, CHO), 7.40 (d, 2H, H-3, H-6), 7.36 (dd, 1H, H-7), 7.15 (dd, 1H, H-5), 3.97 (t, 2H, H-8), 1.79 (dt, 2H, H-9), 1.44 (m, 2H, H-10), 1.26 (m, 10H, H-11, H-12, H-13, H-14, H-15), 0.86 (t, 3H, CH<sub>3</sub>); <sup>13</sup>C NMR (CDCl<sub>3</sub>): <italic>δ</italic> = 192.0 (CHO), 159.6 (C-4), 137.6 (C-2), 129.8 (C-6), 123.1 (C-7), 121.8 (C-5), 112.6 (C-3), 68.1 (C-8), 31.8 (C-9), 29.4 (C-10), 29.3 (C-11), 29.2 (C-12), 29.0 (C-13) 25.9 (C-14), 22.6 (C-15), 14.0 (C-16).</p></sec>
<sec>
<title>3.1.3 General Procedure for the Synthesis of Imidazolines from Benzaldehydes</title>
<p>To 1 eq of alkyloxybenzaldehyde dissolved in <italic>t</italic>-BuOH was added 1.1 eq of ethylenediamine, at r.t. under N<sub>2</sub> atmosphere and with constant stirring. The reaction mixture was held under these conditions for 1 h, then 1.25 eq of I<sub>2</sub> and 3 eq of K<sub>2</sub>CO<sub>3</sub> were added. The resulting mixture was stirred at 70 °C for 3 h. Then the mixture was filtered and the residue was poured in water and extracted with EtOAc 5 times. The organic phase was washed with a saturated solution of Na<sub>2</sub>SO<sub>3</sub> and dried over Na<sub>2</sub>SO<sub>4</sub> anh. The solvent was evaporated in a rotatory evaporator and the remnant residue was purified by chromatography on neutral Al<sub>2</sub>O<sub>3</sub> (hexane:EtOAc gradient) to furnish the pure compounds.</p>
<p>8-Hexyloxyphenyl-2-imidazoline (<bold>18a</bold>). m.p. 120–121 °C (hexane:EtOAc 1:1); Lit. [<xref ref-type="bibr" rid="b27-ijms-13-01284">27</xref>,<xref ref-type="bibr" rid="b28-ijms-13-01284">28</xref>] 124 °C, 122–123 °C (acetone:hexane); IR (KBr): <italic>υ</italic> = 3084 cm<sup>−1</sup>, 2929, 1615, 1513, 841, 741; <sup>1</sup>H NMR (DMSO-d<sub>6</sub>): <italic>δ</italic> = 7.59 (AA′BB′, 4H, Ph), 4.07 (t, 2H, H-9), 3.91 (s, 4H, H-4, H-4′), 1.73 (qi, 2H, H-10), 1.42 (m, 2H, H-11), 1.31 (m, 4H, H-12, H-13), 0.88 (t, 3H, CH<sub>3</sub>); <sup>13</sup>C NMR (DMSO-d<sub>6</sub>): <italic>δ</italic> = 163.8 (C-2), 162.9 (C-8), 130.6 (C-6), 115.0 (C-5), 114.7 (C-7), 68.0 (C-9), 44.8 (C-4, C-4′), 30.9 (C10), 28.4 (C-11), 25.0 (C-12), 22.0 (C-13), 13.8 (C-14); MS (70 eV): m/z (%) = 246(22%) [M<sup>+</sup>].</p>
<p>8-Nonyloxyphenyl-2-imidazoline (<bold>18b</bold>). m.p. 107–108 °C (EtOAc:acetone 8:2), Lit. [<xref ref-type="bibr" rid="b28-ijms-13-01284">28</xref>] 108–108.5 °C; IR (KBr): <italic>υ</italic> = 3217 cm<sup>−1</sup>, 2922, 1618, 1246, 828; <sup>1</sup>H NMR (DMSO-d<sub>6</sub>): <italic>δ</italic> = 6.55 (AA′BB′, 4H, Ph), 3.22 (t, 2H, H-9), 2.78 (s, 4H, H-4, H-4′), 0.90 (qi, 2H, H-10), 0.49 (m, 10H, H-11, H-12, H-13, H-14, H-15), 0.10 (t, 3H, CH<sub>3</sub>); <sup>13</sup>C NMR (DMSO-d<sub>6</sub>): <italic>δ</italic> = 163.1 (C-2), 160.1 (C-8), 128.5 (C-6), 122.8 (C-5), 113.8 (C-7), 67.4 (C-9), 49.4 (C-4, C-4′), 31.2 (C10), 28.9 (C-11), 28.7 (C-12), 28.6 (C-13), 28.5 (C-14), 25.4 (C-15), 22.0 (C-16), 13.9 (C-17); HRMS = C<sub>18</sub>H<sub>28</sub>ON<sub>2</sub> Calcd.: 288.2202, found 288.2201.</p>
<p>7-Hexyloxyphenyl-2-imidazoline (<bold>18c</bold>). m.p. = 88–89 °C (hexane:EtOAc 6:4); IR (KBr): <italic>υ</italic> = 3177 cm<sup>−1</sup> (NH), 2919, 2853, 1614, 1276, 851; <sup>1</sup>H NMR (DMSO-d<sub>6</sub>, CDCl<sub>3</sub>): <italic>δ</italic> = 7.37 (m, 1H, H-10), 7.29 (m, 2H, H9, H-6), 6.98 (ddd, <italic>J</italic><italic><sub>8,9</sub></italic> = 3.0 Hz, <italic>J</italic><italic><sub>8,6</sub></italic> = 8 Hz, <italic>J</italic><italic><sub>8.9</sub></italic> = 9.0 Hz, 1H, H-8), 3.96 (t, <italic>J</italic> = 6.0 Hz) 2H, H-11), 3.78 (s, 4H, H-4, H-4′), 1.76 (m, 2H, H-12), 1.43 (m, 2H, H-13), 1.33 (m, 4H, H-14,H-15) 0.89 (t, 3H, CH<sub>3</sub>); <sup>13</sup>C NMR (DMSO-d<sub>6</sub>, CDCl<sub>3</sub>): <italic>δ</italic> = 164.8 (C-2), 159.2, (C-7), 131.7 (C-5), 129.4 (C-9), 118.9 (C-10), 117.8 (C-8), 112.3 (C-6), 68.1 (C-11), 31.5 (C-4), 30.9 (C-12), 29.2(C-13), 25.6(C-14), 22.6 (C-15), 13.1 (C-16); HRMS = C<sub>15</sub>H<sub>22</sub>N<sub>2</sub>O Calcd.: 246.1716, found: 246.1732.</p>
<p>7-Nonyloxyphenyl-2-imidazoline (<bold>18d</bold>). m.p. 82–83 °C (H:AcOEt 6:4); IR (KBr): <italic>υ</italic> = 3053 cm<sup>−1</sup>, 2926, 2854, 1615, 1265, 739; <sup>1</sup>H NMR (Acetone-d<sub>6</sub> CDCl<sub>3</sub>): <italic>δ</italic> = 7.35 (ddd, <italic>J</italic><sub>10,9</sub> = 0.5 Hz, <italic>J</italic><sub>10,6</sub> = 1.0 Hz, <italic>J</italic><sub>10,8</sub> = 2.6 Hz, 1H, H-10); 7.272 (dd, <italic>J</italic><sub>10,9</sub> = 0.5 Hz, <italic>J</italic><sub>8,9</sub> = 6.0 Hz, 1H, H-9), 7.268 (dd, <italic>J</italic><sub>10,6</sub> = 1.0 Hz, <italic>J</italic><sub>6,8</sub> = 3.4 Hz, 1H, H-6), 6.97 (ddd, <italic>J</italic><sub>8,10</sub> = 2.6 Hz, <italic>J</italic><sub>8,9</sub> = 6.0 Hz, <italic>J</italic><sub>6,8</sub> = 3.4 Hz, 1H, H-8), 4.01 (t, 2H, H-11), 3.66 (s, 4H, H-4, H-4′), 1.78 (m, 2H, H-12), 1.32 (m, 2H, H-13), 1.29 (m, 10H, H-14, H-15, H-16, H-17, H-18), 0.88 (t, 3H, CH<sub>3</sub>); <sup>13</sup>C NMR (Acetone-d<sub>6</sub> CDCl<sub>3</sub>): <italic>δ</italic> = 163.1 (C-2), 158.0, (C-7), 131.3 (C-5), 128.0 (C-9), 118.1 (C-10), 115.6 (C-8), 111.6 (C-6), 66.6 (C-11), 52.9 (C-4), 48.9 (C-12, C-13), 30.6 (C-14), 28.3 (C-15), 28.0 (C-16), 24.8 (C-17), 21.3 (C-18), 12.4(C-19); HRMS = C<sub>18</sub>H<sub>28</sub>N<sub>2</sub>O Calcd.: 288.2202, found: 288.2209</p></sec>
<sec>
<title>3.1.4. Synthesis of <italic>N</italic>-4-Benzonitrile Alkylamides</title>
<p>Carboxylic acid (1.0 eq) was added, at 0 °C (ice bath) under N<sub>2</sub> atm. with constant stirring, to 1.0 eq of DCC and 1.0 eq of 4-aminobenzonitrile dissolved in CH<sub>2</sub>Cl<sub>2</sub>. After 5 min the ice bath was withdrawn and the mixture was stirred (protected from light). The reaction was followed by TLC (silica gel and hexane:EtOAc 9:1). The reaction mixture was filtered and the solid washed with cooled CH<sub>2</sub>Cl<sub>2</sub>. The liquid phase was evaporated and the residue was purified by column chromatography over SiO<sub>2</sub>/K<sub>2</sub>CO<sub>3</sub> 5% (gradient Hexane:EtOAc).</p>
<p><italic>N</italic>-(4-Benzonitrile) hexylamide (<bold>17e</bold>). IR (KBr): <italic>υ</italic> = 3324 cm<sup>−1</sup>, 2220 (CN), 1681, 840; <sup>1</sup>H NMR (CDCl<sub>3</sub>): <italic>δ</italic> = 9.26 (s, 1H, NH), 7.71 (AA′BB′, 4H, Ph), 2.46 (t, 2H, H-8), 1.74 (m, 4H, H-9, H-10), 1.34 (m, 2H, H-11), 0.88 (t, 3-H, H-12); <sup>13</sup>C NMR (75.4 MHz, CDCl<sub>3</sub>): <italic>δ</italic> = 172.7 (C=O), 153.8 (C<italic>ipso</italic> NH), 151.2 (C<italic>ipso</italic> CN), 132.6 (C<italic>orto</italic> CN), 119.3 (C<italic>orto</italic> NH), 105.6 (CN), 37.0 (C-8), 30.9 (C-9), 24.8 (C-10), 21.9 (C-11), 13.4 (C-12); MS (70 eV): m/z(%) = 216 (&lt;2) [M<sup>+</sup>], 160 (8) [CH<sub>2</sub>CONHC<sub>6</sub>H<sub>4</sub>CN + H<sup>+</sup>], 118 (100) [NHC<sub>6</sub>H<sub>4</sub>CN].</p>
<p><italic>N</italic>-(4-Benzonitrile) nonamide (<bold>17f</bold>). m.p. 45–46 °C (hexane:AcOEt 8:2); IR (KBr): <italic>υ</italic> = 3310 cm<sup>−1</sup>, 3185, 2926, 2221(CN), 1651(C=O), 843; <sup>1</sup>H NMR (CDCl<sub>3</sub>): <italic>δ</italic> = 9.2 (br s, 1H, NH), 7.68 (AA′BB′, 4H, Ph), 2.42 (t, 2H, CH<sub>2</sub>CO), 1.73 (m, 2H, H-8), 1.27 (m, 10H, H-9, H-10, H-11, H-12, H-13, H-14), 0.87 (t, 3H, CH<sub>3</sub>); <sup>13</sup>C NMR (CDCl<sub>3</sub>): <italic>δ</italic> = 173.0 (C=O), 153.9 (C<italic>ipso</italic> CN), 142.2 (C<italic>ipso</italic> HNCO), 132.1 (C<italic>orto</italic> CN), 119.6 (C<italic>orto</italic> HNCO), 104.9 (CN), 36.7 (C-8), 32.0 (C-9), 28.4 (C-10), 28.2 (C-11), 25.8(C-12), 25.2 (C-13), 22.3 (C-14), 13.7 (C-15); MS (70 eV): m/z(%) = 258 (30) [CH<sub>2</sub>CONC<sub>6</sub>H<sub>4</sub>CN], 141 (24) [C<sub>9</sub>H<sub>17</sub>CO], 60 (100) [C<sub>2</sub>H<sub>6</sub>NO].</p></sec>
<sec>
<title>3.1.5. Synthesis of <italic>N</italic>-[4-Phenyl-(imidazo-2-yl)]-alkylamides</title>
<p><italic>N</italic>-(4-Benzonitrile) alkylamide (1.0 eq) in a pressure tube was added 1.0 eq of ethylenediamine and 1.0 eq of CS<sub>2</sub>. The mixture reaction was stirred and irradiated in a chemical MW oven at 100 Watts in a range 112–179 °C at 15 seg intervals during 5.0 min 30 seg. The reaction mixture changed from a deep yellow to pale yellow color and was purified over neutral Al<sub>2</sub>O<sub>3</sub> with a top layer of anh. sodium sulphite (gradient of Hexane:EtOAc and finally EtOH). The solvent was evaporated and the residue was recrystallized of acetone. The pure compounds were characterized.</p>
<p><italic>N</italic>-[4-Phenyl-(imidazo-2-yl)]-hexylamide (<bold>18e</bold>). IR (KBr): <italic>υ</italic> = 3358 cm<sup>−1</sup>, 2937, 2868, 1678 (C=O), 848; <sup>1</sup>H NMR (CDCl<sub>3</sub>): <italic>δ</italic> = 7.20 (AA′BB′, 4H, Ph), 3.8 (s, 4H, NCH2CH2NH), 3.04 (t, 2H, H-2), 1.45 (m, 2H, H-3), 2.28 (m, 2H, H-4), 1.22 (m, 4H, H-5, H-6), 0.81 (t, 3H, H-7); <sup>13</sup>C NMR (CDCl<sub>3</sub>): <italic>δ</italic> = 164.6 (N=C–NH), 154.3 (C<italic>ipso</italic> NHPh), 131.0 (C<italic>orto</italic> N=C–NH), 112.0 (C<italic>ipso</italic> N=C–NH), 107.5 (C<italic>orto</italic> NHPh), 44.3 (C-2), 31.5 (C-3), 28.8 (C-4), 26.7 (C-5), 22.5 (C-6), 14.4 (C-7); HRMS = C<sub>15</sub>H<sub>21</sub>N<sub>3</sub>O Calcd.: 259.1685 found: 259.1683.</p>
<p><italic>N</italic>-[4-Phenyl-(imidazo-2-yl)]-nonamide (<bold>18f</bold>). m.p. 123–124 °C (acetone); IR (KBr): <italic>υ</italic> = 3315 cm<sup>−1</sup>, 2924, 1671(C=O), 846; <sup>1</sup>H NMR (CDCl<sub>3</sub>): <italic>δ</italic> = 10.38 (s, 1H, CONH), 10.3 (br.s, 1H, N=C–NH), 7.83 (AA′, BB′, 4H, Ph), 3.86 (s, 4H, CH<sub>2</sub>CH<sub>2</sub>NH), 2.34 (t, <italic>J</italic> = 7 Hz, 2H, CH<sub>2</sub>CO), 1.57, (m, 2H, H-4), 1.27 (m, 10H, H-5, H-6,H-7, H-8, H-9), 0.84 (t, <italic>J</italic> = 7 Hz, 3H, CH<sub>3</sub>); <sup>13</sup>C NMR (CDCl<sub>3</sub>): <italic>δ</italic> = 172.6 (C=O), 164.4 (N=C–NH), 144.4 (C<italic>ipso</italic> N=C–NH), 129.7 (C<italic>orto</italic> N=C–NH), 118.9 (C<italic>orto</italic> NCO), 118.5 (C<italic>ipso</italic> NCO), 46.0 (=NCH<sub>2</sub>CH<sub>2</sub>NH), 36.9 (C-3), 31.7 (C-4), 29.2 (C-5), 29.1 (C-6), 29.0 (C-7), 25.4 (C-8), 22.5 (C-9), 14.4 (C-10) ; HRMS = C<sub>18</sub>H<sub>27</sub>N<sub>3</sub>O Calcd.: 301.2154, found: 301.2153.</p></sec></sec>
<sec>
<title>3.2. Experimental Biological Section</title>
<sec>
<title>3.2.1. Bacterial Strains</title>
<p><italic>Chromobacterium violaceum</italic> wt. ATCC 12472 and <italic>Serratia marcescens</italic> ATCC 8100 were generous gifts of Dr. Graciela Castro-Escarpulli and the ENCB Medical Bacteriology Laboratory respectively.</p></sec>
<sec>
<title>3.2.2. Evaluation of the Effect of Bioisosteres on Cell Viability</title>
<p>Cells from cultures exhibiting inhibition of pigment production in the presence of the imidazolines under study were washed by centrifugation and resuspended in the original volume of medium. Serial dilutions were spread onto Luria plates (<italic>C. violaceum</italic>) or tripticase soy agar plates (<italic>S. marcescens</italic>) and counted to determine the CFU per milliliter.</p></sec>
<sec>
<title>3.2.3. Quantification of Violacein in <italic>Chromobacterium violaceum</italic> Wild Type</title>
<p>A flask containing 30 mL of autoclaved BBL thioglycolate (Becton, Dickinson, USA), supplemented with 17 mM MgCl<sub>2</sub>, 26 mM K<sub>2</sub>HPO<sub>4</sub>, 2.8 mM K<sub>2</sub>SO<sub>4</sub>, 3 mg/mL L-methionine and 500 ng/mL vitamin B12 (all previously sterilized by Millipore filtration) for the optimum production of violacein, was inoculated with an overnight <italic>Chromobacterium violaceum</italic> culture up to an optical density (OD) of 0.1 at 720 nm. Aliquots (990 μL) of culture were placed in a 2 mL tube. Then 10 μL of the compound to be tested was dissolved in sterile dimethyl sulphoxide and diluted with the culture until reaching final concentrations of 100 pM, 1 nM, 10 nM, 100 nM, 1 μM, 10 μM, 100 μM and 1 mM. DMSO alone was added to the control tubes. All tubes were sealed with Lid Bac filters and incubated at 28 °C at 900 RPM during 15 h in the Thermomixer R (Eppendorf, Germany). A 15 h period of incubation was selected as the most adequate to measure the effect of the compounds, in accordance to the results of the kinetics of violacein production.</p>
<p>The activity of the bioisosteres was expressed as a percentage of specific production (sp) of violacein (as shown below) in relation to the control tubes. Each experiment was performed 6 times and the results analyzed by a two way ANOVA test with Duncan correction.</p>
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<sec>
<title>3.2.4 Quantification of Prodigiosin on <italic>Serratia marcescens</italic> ATCC 8100</title>
<p>Trypticase soy medium (5 mL) was inoculated with the <italic>Serratia marcescens</italic> ATCC 8100 strain. The culture was incubated at 37 °C/24 h then adjusted to a value of one of absorbance in the spectrophotometer.</p>
<p>Blank control and seven concentrations (100 μM, 10 μM, 1 μM, 0.1 μM, 0.01 nM, 0.001 μM, 0.0001 μM) of the compound <italic>N</italic>-[4-phenyl-(imidazo-2-yl)]-nonamide were placed in 8 tubes. The tripticase medium was added to the tubes and these were incubated at 22 °C during 17 h.</p></sec>
<sec>
<title>3.2.5. Extraction and Quantification of Prodigiosin</title>
<p>Aliquots with 500 μL of each culture were transferred into Eppendorf tubes of 1.5 mL. After this, 500 μL of ethanol containing 4% hydrochloric acid were added. Tubes were shaken intensively with vortex and then they were centrifuged in a microcentrifuge (Hermle Z233 M-2) at 15,000 rpm for 3 min. Finally 400 μL of the red supernatant (prodigiosin) were placed in flat-bottom microplate wells and suspension was read in an ELISA reader at 540 nm. The O.D. was also determined in the ELISA reader at 600 nm, placing 400 μL of bacterial culture from each of the tubes in a microplate well.</p>
<disp-formula id="FD2">
<mml:math id="mm2" display="block">
<mml:semantics id="sm2">
<mml:mrow>
<mml:mtext>Specific production of prodigiosin</mml:mtext>
<mml:mo>=</mml:mo>
<mml:mo stretchy="false">(</mml:mo>
<mml:msub>
<mml:mrow>
<mml:mtext>A</mml:mtext></mml:mrow>
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<mml:mn>540</mml:mn></mml:mrow></mml:msub>
<mml:mo>/</mml:mo>
<mml:msub>
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<mml:mtext>A</mml:mtext></mml:mrow>
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<mml:mn>600</mml:mn></mml:mrow></mml:msub>
<mml:mo stretchy="false">)</mml:mo></mml:mrow></mml:semantics></mml:math></disp-formula></sec></sec></sec>
<sec sec-type="conclusions">
<title>4. Conclusions</title>
<p>Three novel non-classical bioisosteres of AHL, imidazoline derivatives <bold>18a</bold>, <bold>18e</bold> and <bold>18f</bold>, were found to inhibit the production of violacein, strongly suggesting an <italic>antiquorum sensing</italic> effect in <italic>Chromobacterium violaceum</italic>. The conjugation established between the heteroatom placed at the <italic>para</italic> position of the phenyl ring and the imidazoline moiety was a determining factor of the activity shown by the assayed compounds. The lowest concentration giving <italic>antiquorum sensing</italic> activity on <italic>Chomobacterium violaceum</italic> was 1 nM of the imidazoline conjugated with the nonanoyl group, <bold>18f</bold>. This compound was active at almost all tested concentrations. The highest <italic>QS</italic> inhibitory activity on <italic>C. violaceum</italic> shown by the test compounds was by imidazoline <bold>18a</bold> at 100 μM, without affecting the growth of the bacteria. At higher concentrations this compound did show inhibitory activity on bacterial growth. Imidazoline <bold>18b</bold> had no <italic>QS</italic> inhibitory effect on <italic>C. violaceum</italic>, but it had a bacteriostatic effect at 100 μM and a bactericide effect at 1 mM. Finally, imidazoline <bold>18f</bold>, when tested on <italic>Serratia marcescens</italic>, inhibited the production of prodigiosin at 10 μM and 100 μM, which strongly suggests an <italic>antiquorum sensing</italic> effect.</p></sec></body>
<back>
<ack>
<title>Acknowledgements</title>
<p>We thank Gerardo Aparicio Ozores for his contribution in the evaluation of compound <bold>18f</bold> on <italic>Serratia marcescens</italic>. We gratefully acknowledge the financial support provided for this work by CONACYT (Mexico) through Research Grant No. 90894, and by IPN through Research Grants: SIP 20100679, 20110945 and PAPIRI. MMS and ABC are thankful to Conacyt and to IPN for a graduate and PIFI scholarships.</p></ack>
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<sec sec-type="display-objects">
<title>Figures and Tables</title>
<fig id="f1-ijms-13-01284" position="float">
<label>Figure 1</label>
<caption>
<p>Classical bioisosteres of <italic>N</italic>-acyl homoserine lactones (AHL).</p></caption>
<graphic xlink:href="ijms-13-01284f1.gif"/></fig>
<fig id="f2-ijms-13-01284" position="float">
<label>Figure 2</label>
<caption>
<p>Non-classical bioisosteres of AHL.</p></caption>
<graphic xlink:href="ijms-13-01284f2.gif"/></fig>
<fig id="f3-ijms-13-01284" position="float">
<label>Figure 3</label>
<caption>
<p>Compounds with no structural or electronic resemblance to AHLs.</p></caption>
<graphic xlink:href="ijms-13-01284f3.gif"/></fig>
<fig id="f4-ijms-13-01284" position="float">
<label>Figure 4</label>
<caption>
<p>Evaluation of activity of imidazolines <bold>18a–18f</bold> in violacein production on <italic>C. violaceum.</italic> Effect of biososteres in violacein production in <italic>C. violaceum</italic>. Blank control (brown), <bold>18a</bold> (red), <bold>18b</bold> (green), <bold>18c</bold> (black), <bold>18d</bold> (cyan), <bold>18e</bold> (violet) and <bold>18f</bold> (blue). Asterisks indicate statistically significant activity. Data were calculated by using a two way ANOVA test with Duncan correction and are displayed as the mean ± SE (<italic>n</italic> = 6).</p></caption>
<graphic xlink:href="ijms-13-01284f4.gif"/></fig>
<fig id="f5-ijms-13-01284" position="float">
<label>Figure 5</label>
<caption>
<p><italic>N</italic>-Acyl homoserine lactones utilized in <italic>quorum sensing</italic> by <italic>Serratia marcescens</italic>.</p></caption>
<graphic xlink:href="ijms-13-01284f5.gif"/></fig>
<fig id="f6-ijms-13-01284" position="float">
<label>Figure 6</label>
<caption>
<p>Evaluation of activity of imidazoline <bold>18f</bold> on <italic>Serratia marcescens</italic>. Data were analyzed employing the two way ANOVA test with Duncan correction, and are displayed as the mean ± SE (<italic>n</italic> = 6).</p></caption>
<graphic xlink:href="ijms-13-01284f6.gif"/></fig>
<table-wrap id="t1-ijms-13-01284" position="float">
<label>Table 1</label>
<caption>
<p>Preparation of synthetic intermediates of imidazoline derivatives.</p></caption>
<table frame="box" rules="all">
<thead>
<tr>
<th colspan="6" align="center" valign="middle">
<graphic xlink:href="ijms-13-01284f7.gif"/></th></tr>
<tr>
<th align="center" valign="middle">D</th>
<th align="center" valign="middle">EWG</th>
<th align="center" valign="middle">Reagents and reaction conditions</th>
<th align="center" valign="middle">Ch</th>
<th align="center" valign="middle">Compound number</th>
<th align="center" valign="middle">Isolated yield (%)</th></tr></thead>
<tbody>
<tr>
<td align="center" valign="top"><italic>p</italic>-OH</td>
<td align="center" valign="top">CHO</td>
<td align="center" valign="top">a, reflux</td>
<td align="center" valign="top"><italic>O</italic>-nC<sub>6</sub>H<sub>13</sub></td>
<td align="center" valign="top"><bold>17a</bold></td>
<td align="center" valign="top">80</td></tr>
<tr>
<td align="center" valign="top"><italic>p</italic>-OH</td>
<td align="center" valign="top">CHO</td>
<td align="center" valign="top">a, reflux</td>
<td align="center" valign="top"><italic>O</italic>-nC<sub>9</sub>H<sub>19</sub></td>
<td align="center" valign="top"><bold>17b</bold></td>
<td align="center" valign="top">85</td></tr>
<tr>
<td align="center" valign="top"><italic>m</italic>-OH</td>
<td align="center" valign="top">CHO</td>
<td align="center" valign="top">a, reflux</td>
<td align="center" valign="top"><italic>O</italic>-nC<sub>6</sub>H<sub>13</sub></td>
<td align="center" valign="top"><bold>17c</bold></td>
<td align="center" valign="top">81</td></tr>
<tr>
<td align="center" valign="top"><italic>m</italic>-OH</td>
<td align="center" valign="top">CHO</td>
<td align="center" valign="top">a, reflux</td>
<td align="center" valign="top"><italic>O</italic>-nC<sub>9</sub>H<sub>19</sub></td>
<td align="center" valign="top"><bold>17d</bold></td>
<td align="center" valign="top">81</td></tr>
<tr>
<td align="center" valign="top">NH<sub>2</sub></td>
<td align="center" valign="top">CN</td>
<td align="center" valign="top">b, r.t.</td>
<td align="center" valign="top">NHCO-nC<sub>5</sub>H<sub>11</sub></td>
<td align="center" valign="top"><bold>17e</bold></td>
<td align="center" valign="top">70</td></tr>
<tr>
<td align="center" valign="top">NH<sub>2</sub></td>
<td align="center" valign="top">CN</td>
<td align="center" valign="top">b, r.t.</td>
<td align="center" valign="top">NHCO-nC<sub>8</sub>H<sub>17</sub></td>
<td align="center" valign="top"><bold>17f</bold></td>
<td align="center" valign="top">80</td></tr></tbody></table></table-wrap>
<table-wrap id="t2-ijms-13-01284" position="float">
<label>Table 2</label>
<caption>
<p>Synthesis of the 2-arylimidazoline derivatives.</p></caption>
<table frame="box" rules="all">
<thead>
<tr>
<th colspan="5" align="center" valign="middle">
<graphic xlink:href="ijms-13-01284f8.gif"/></th></tr>
<tr>
<th align="center" valign="middle">Ch</th>
<th align="center" valign="middle">EWG</th>
<th align="center" valign="middle">Reagents and conditions</th>
<th align="center" valign="middle">Compound number</th>
<th align="center" valign="middle">Isolated yield (%)</th></tr></thead>
<tbody>
<tr>
<td align="center" valign="top"><italic>p</italic>-<italic>O</italic>-nC<sub>6</sub>H<sub>13</sub></td>
<td align="center" valign="top">CHO</td>
<td align="center" valign="top">c, reflux</td>
<td align="center" valign="top"><bold>18a</bold></td>
<td align="center" valign="top">Quantitative</td></tr>
<tr>
<td align="center" valign="top"><italic>p-O</italic>-nC<sub>9</sub>H<sub>19</sub></td>
<td align="center" valign="top">CHO</td>
<td align="center" valign="top">c, reflux</td>
<td align="center" valign="top"><bold>18b</bold></td>
<td align="center" valign="top">Quantitative</td></tr>
<tr>
<td align="center" valign="top"><italic>m</italic>-<italic>O</italic>-nC<sub>6</sub>H<sub>13</sub></td>
<td align="center" valign="top">CHO</td>
<td align="center" valign="top">c, reflux</td>
<td align="center" valign="top"><bold>18c</bold></td>
<td align="center" valign="top">Quantitative</td></tr>
<tr>
<td align="center" valign="top"><italic>m</italic>-<italic>O</italic>-nC<sub>9</sub>H<sub>19</sub></td>
<td align="center" valign="top">CHO</td>
<td align="center" valign="top">c, reflux</td>
<td align="center" valign="top"><bold>18d</bold></td>
<td align="center" valign="top">Quantitative</td></tr>
<tr>
<td align="center" valign="top">NHCO-nC<sub>5</sub>H<sub>11</sub></td>
<td align="center" valign="top">CN</td>
<td align="center" valign="top">d, MW</td>
<td align="center" valign="top"><bold>18e</bold></td>
<td align="center" valign="top">50</td></tr>
<tr>
<td align="center" valign="top">NHCO-nC<sub>8</sub>H<sub>17</sub></td>
<td align="center" valign="top">CN</td>
<td align="center" valign="top">d, MW</td>
<td align="center" valign="top"><bold>18f</bold></td>
<td align="center" valign="top">60</td></tr></tbody></table></table-wrap></sec></back></article>
