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	<front>
		<journal-meta>
			<journal-id journal-id-type="publisher-id">ijms</journal-id>
			<journal-title>International Journal of Molecular Sciences</journal-title>
			<abbrev-journal-title>Int. J. Mol. Sci.</abbrev-journal-title>
			<issn pub-type="epub">1422-0067</issn>
			<publisher>
				<publisher-name>Molecular Diversity Preservation International (MDPI)</publisher-name>
			</publisher>
		</journal-meta>
		<article-meta>
			<article-id pub-id-type="doi">10.3390/ijms11114726</article-id>
			<article-id pub-id-type="publisher-id">ijms-11-04726</article-id>
			<article-categories>
				<subj-group>
					<subject>Article</subject>
				</subj-group>
			</article-categories>
			<title-group>
				<article-title>Optimization of the Culture Medium Composition to Improve the Production of Hyoscyamine in Elicited <italic>Datura stramonium</italic> L. Hairy Roots Using the Response Surface Methodology (RSM)</article-title>
			</title-group>
			<contrib-group>
				<contrib contrib-type="author">
					<name>
						<surname>Amdoun</surname>
						<given-names>Ryad</given-names>
					</name>
					<xref ref-type="aff" rid="af1-ijms-11-04726">1</xref>
				</contrib>
				<contrib contrib-type="author">
					<name>
						<surname>Khelifi</surname>
						<given-names>Lakhdar</given-names>
					</name>
					<xref ref-type="aff" rid="af1-ijms-11-04726">1</xref>
					<xref ref-type="corresp" rid="c1-ijms-11-04726">*</xref>
				</contrib>
				<contrib contrib-type="author">
					<name>
						<surname>Khelifi-Slaoui</surname>
						<given-names>Majda</given-names>
					</name>
					<xref ref-type="aff" rid="af1-ijms-11-04726">1</xref>
				</contrib>
				<contrib contrib-type="author">
					<name>
						<surname>Amroune</surname>
						<given-names>Samia</given-names>
					</name>
					<xref ref-type="aff" rid="af1-ijms-11-04726">1</xref>
				</contrib>
				<contrib contrib-type="author">
					<name>
						<surname>Asch</surname>
						<given-names>Mark</given-names>
					</name>
					<xref ref-type="aff" rid="af2-ijms-11-04726">2</xref>
				</contrib>
				<contrib contrib-type="author">
					<name>
						<surname>Assaf-Ducrocq</surname>
						<given-names>Corinne</given-names>
					</name>
					<xref ref-type="aff" rid="af3-ijms-11-04726">3</xref>
				</contrib>
				<contrib contrib-type="author">
					<name>
						<surname>Gontier</surname>
						<given-names>Eric</given-names>
					</name>
					<xref ref-type="aff" rid="af3-ijms-11-04726">3</xref>
				</contrib>
			</contrib-group>
			<aff id="af1-ijms-11-04726">
				<label>1</label> Laboratoire des Ressources Génétiques et Biotechnologie, Ecole Nationale Supérieure Agronomique, 16200 El-Harrach-Alger, Algeria; E-Mails: <email>r_amdoun@yahoo.fr</email> (A.R.); <email>m.khelifi@ensa.dz</email> (K.-S.M.); <email>samia_amr@hotmail.fr</email> (A.S.)</aff>
			<aff id="af2-ijms-11-04726">
				<label>2</label> Université de Picardie Jules Verne, UFR of Sciences, LAMFA, CNRS-UMR 6140, 33 rue Saint Leu, 80039 Amiens cedex 1, France; E-Mail: <email>mark.asch@u-picardie.fr</email>
			</aff>
			<aff id="af3-ijms-11-04726">
				<label>3</label> Research Unit EA3900 BioPI-UPJV Biologie des plantes et contrôle des insectes ravageurs, Université de Picardie Jules Verne, UFR of Sciences, Ilot des poulies, 33 rue Saint Leu, 80039 Amiens cedex 1, France; E-Mails: <email>corinne.assaf@u-picardie.fr</email> (A.-D.C.); <email>eric.gontier@u-picardie.fr</email> (G.E.)</aff>
			<author-notes>
				<corresp id="c1-ijms-11-04726">
					<label>*</label>Author to whom correspondence should be addressed; E-Mail: <email>khelifi.lakhdar@gmail.com</email>; Fax: +213-21-822-729.</corresp>
			</author-notes>
			<pub-date pub-type="epub">
				<day>18</day>
				<month>11</month>
				<year>2010</year>
			</pub-date>
			<pub-date pub-type="collection">
				<year>2010</year>
			</pub-date>
			<volume>11</volume>
			<issue>11</issue>
			<fpage>4726</fpage>
			<lpage>4740</lpage>
			<history>
				<date date-type="received">
					<day>14</day>
					<month>10</month>
					<year>2010</year>
				</date>
				<date date-type="rev-recd">
					<day>3</day>
					<month>11</month>
					<year>2010</year>
				</date>
				<date date-type="accepted">
					<day>17</day>
					<month>11</month>
					<year>2010</year>
				</date>
			</history>
			<permissions>
				<copyright-statement>© 2010 by the authors; licensee Molecular Diversity Preservation International, Basel, Switzerland.</copyright-statement>
				<copyright-year>2010</copyright-year>
				<license license-type="open-access" xlink:href="http://creativecommons.org/licenses/by/3.0">
					<p>This article is an open-access article distributed under the terms and conditions of the Creative Commons Attribution license (http://creativecommons.org/licenses/by/3.0/).</p>
				</license>
			</permissions>
			<abstract>
				<p>Traditionally, optimization in biological analyses has been carried out by monitoring the influence of one factor at a time; this technique is called <italic>one-variable-at-a-time</italic>. The disadvantage of this technique is that it does not include any interactive effects among the variables studied and requires a large number of experiments. Therefore, in recent years, the Response Surface Methodology (RSM) has become the most popular optimization method. It is an effective mathematical and statistical technique which has been widely used in optimization studies with minimal experimental trials where interactive factors may be involved. This present study follows on from our previous work, where RSM was used to optimize the B5 medium composition in [NO<sup>3−</sup>], [Ca<sup>2+</sup>] and sucrose to attain the best production of hyoscyamine (HS) from the hairy roots (HRs) of <italic>Datura stramonium</italic> elicited by Jasmonic Acid (JA). The present paper focuses on the use of the RSM in biological studies, such as plant material, to establish a predictive model with the planning of experiments, analysis of the model, diagnostics and adjustment for the accuracy of the model. With the RSM, only 20 experiments were necessary to determine optimal concentrations. The model could be employed to carry out interpolations and predict the response to elicitation. Applying this model, the optimization of the HS level was 212.7% for the elicited HRs of <italic>Datura stramonium</italic>, cultured in B5-OP medium (optimized), in comparison with elicited HRs cultured in B5 medium (control). The optimal concentrations, under experimental conditions, were determined to be: 79.1 mM [NO<sup>3−</sup>], 11.4 mM [Ca<sup>2+</sup>] and 42.9 mg/L of sucrose.</p>
			</abstract>
			<kwd-group>
				<kwd>
					<italic>Datura stramonium</italic>
				</kwd>
				<kwd>hyoscyamine</kwd>
				<kwd>hairy root</kwd>
				<kwd>medium components</kwd>
				<kwd>optimization</kwd>
				<kwd>Response Surface Methodology</kwd>
			</kwd-group>
		</article-meta>
	</front>
	<body>
		<sec sec-type="intro">
			<label>1.</label>
			<title>Introduction</title>
			<p>Hairy roots (HRs) are an efficient system for the production of secondary metabolites [<xref ref-type="bibr" rid="b1-ijms-11-04726">1</xref>–<xref ref-type="bibr" rid="b4-ijms-11-04726">4</xref>]. However, the performance of this production system depends on the composition of the nutrient medium, which not only affects the content of secondary metabolites [<xref ref-type="bibr" rid="b5-ijms-11-04726">5</xref>–<xref ref-type="bibr" rid="b11-ijms-11-04726">11</xref>], but also the response to elicitation [<xref ref-type="bibr" rid="b12-ijms-11-04726">12</xref>]. The main aim of optimization is to improve the performance of the system by increasing production at a low cost [<xref ref-type="bibr" rid="b13-ijms-11-04726">13</xref>,<xref ref-type="bibr" rid="b14-ijms-11-04726">14</xref>].</p>
			<p>In general, the experimental procedure of optimization is achieved by studying a single factor at any one time. While this factor is modified to find the optimal response, others are kept at a constant level. This is known as the <italic>one-variable-at-a-time-technique</italic>. Clearly, its major disadvantage is that interactions among the factors are not considered so it does not reflect all the potential effects on the process [<xref ref-type="bibr" rid="b15-ijms-11-04726">15</xref>]. Another drawback is the large number of experiments needed, requiring additional time and expense. More efficient analytical techniques are based on Response Surface Methodology (RSM) [<xref ref-type="bibr" rid="b14-ijms-11-04726">14</xref>]. This was first proposed by Box and his collaborators in 1951 [<xref ref-type="bibr" rid="b16-ijms-11-04726">16</xref>] as a method to determine the optimal conditions which maximize or minimize a response. It enables a large amount of data to be obtained from a reduced number of experiments, including the potential interactions between the studied factors [<xref ref-type="bibr" rid="b13-ijms-11-04726">13</xref>]. The RSM can be defined as a group of statistical and technical tools used to study the relationship between a response of interest and several input variables. The model has to describe the behavior of a group of data with a view to making statistical predictions. The aim is the simultaneous optimization of several factors to lead to the best performance of a particular system [<xref ref-type="bibr" rid="b14-ijms-11-04726">14</xref>].</p>
			<p>During recent years, the RSM has been used extensively for optimization in many areas of industrial research and process development in chemistry and biochemistry. Although Calam [<xref ref-type="bibr" rid="b17-ijms-11-04726">17</xref>] was the first to suggest the application of RSM in biotechnology, its field was limited [<xref ref-type="bibr" rid="b18-ijms-11-04726">18</xref>].</p>
			<p>Its use for the optimization and analysis of biotechnological processes with microorganisms and enzymatic engineering has given good results. For example, the work of Maddox and Richert [<xref ref-type="bibr" rid="b19-ijms-11-04726">19</xref>] in optimizing bacterial media and Cheynier <italic>et al.</italic> [<xref ref-type="bibr" rid="b20-ijms-11-04726">20</xref>] in optimizing enzymatic activity can be cited. However, the application of this analytical technique to systems with plant tissues has been limited.</p>
			<p>This study follows the work of Amdoun <italic>et al.</italic> [<xref ref-type="bibr" rid="b12-ijms-11-04726">12</xref>] and presents two main aims:
<list list-type="simple">
					<list-item>
						<p>- First, to use the RSM method for the optimization of nutrients (nitrate, calcium and sucrose) in the culture medium B5 [Gamborg, 1968] to improve hyoscyamine production in elicited HRs;</p>
					</list-item>
					<list-item>
						<p>- Second, to show the value of the RSM method in the optimization of several responses in plant material cultures.</p>
					</list-item>
				</list>
			</p>
		</sec>
		<sec sec-type="materials|methods">
			<label>2.</label>
			<title>Materials and Methods</title>
			<sec sec-type="materials">
				<label>2.1.</label>
				<title>Plant Materials</title>
				<p>The HRs, obtained by genetic transformation and selection, were subcultured in the same conditions as described previously [<xref ref-type="bibr" rid="b12-ijms-11-04726">12</xref>].</p>
			</sec>
			<sec>
				<label>2.2.</label>
				<title>Elicitation</title>
				<p>The use of the desirability function enabled the Jasmonic Acid concentration (JAC) and the exposure time (ET) to be optimized. The optimal JA concentration of 0.06 mM with an exposure time of 24 h was the optimal compromise. The elicitation treatment was initiated 24 h before harvesting the HRs line and was removed for analysis on the 28th day of culture. This length of time was identified as the best stage for elicitation for the highest hyoscyamine content [<xref ref-type="bibr" rid="b12-ijms-11-04726">12</xref>].</p>
				<p>The solution of Jasmonic Acid (JA) [(−)-jasmonic acid from Sigma-Aldrich] was prepared by dissolving Jasmonic Acid in an adequate volume of ethanol. The solution was filtered through membrane filter (pore size: 0.2 mm Nalgene) and completed with sterile distilled water. The HRs were elicited with this stock solution at 0.06 mM.</p>
				<p>The controls were the same HRs lines in the same conditions of culture but without elicitation (ethanol-water solution without Jasmonic Acid). All cultures were conducted in Petri dishes containing 20 mL of B5 medium, in darkness at 26 ±1 °C.</p>
			</sec>
			<sec sec-type="methods">
				<label>2.3.</label>
				<title>Extraction and Hyoscyamine Analysis</title>
				<p>Alkaloids were extracted using a method described by Amdoun <italic>et al.</italic> [<xref ref-type="bibr" rid="b12-ijms-11-04726">12</xref>]. Hyoscyamine was analyzed using the GC-MS method previously reported by Kartal <italic>et al.</italic> [<xref ref-type="bibr" rid="b21-ijms-11-04726">21</xref>].</p>
			</sec>
			<sec>
				<label>2.4.</label>
				<title>Theory of RSM</title>
				<p>The response surface methodology (RSM) consists of an adjustment of empirical models to the data obtained experimentally. Linear (1st degree) or quadratic (2nd degree) mathematical models are employed to describe the system to be optimized [<xref ref-type="bibr" rid="b22-ijms-11-04726">22</xref>]. When several factors influence a particular system, it is impossible to screen and to control the contribution of each factor so only those factors which have a major influence must be considered. The screening design, such as the factorial designs 2<sup>k</sup>, can be used to meet this objective. They are efficient and economical [<xref ref-type="bibr" rid="b15-ijms-11-04726">15</xref>].</p>
				<p>To evaluate the form of the true response, a second degree model is used. The factorial designs 2<sup>k</sup> are used to determine the first-order effects but these are inefficient when additional effects, like the second-order effects, are so important. Experimental central points in the factorial design 2<sup>k</sup> can be added to evaluate the shape. The polynomial function must contain other factors, which include the interaction between the various experimental variables. To determine a critical point (maximum, minimum or saddle), the polynomial function of second degree must contain quadratic factors.</p>
				<p>The model of second degree is given by <xref ref-type="disp-formula" rid="FD1">equation (1)</xref>, where <italic>Y</italic> is the response, <italic>α</italic>
					<sub>0</sub> is the intercept of the <italic>y</italic> axis, <italic>α<sub>j</sub>
					</italic>, <italic>α<sub>jj</sub>
					</italic>,…, <italic>α<sub>jl</sub>
					</italic> are the various coefficients of the model (linear and quadratic), <italic>X<sub>j</sub>
					</italic> and <italic>X<sub>l</sub>
					</italic> are the independent variables (factors) and <italic>ε</italic> is the error of model with ∀<italic>i</italic>, <italic>V</italic>(<italic>ε<sub>i</sub>
					</italic>) = <italic>σ</italic>
					<sup>2</sup> (homoscedasticity) and ε ∼ <italic>N</italic> (0, <italic>σ</italic>
					<sup>2</sup>) (normal distribution).
<disp-formula id="FD1">
						<label>(1)</label>
						<mml:math id="mm1" display="block">
							<mml:mi>Y</mml:mi>
							<mml:mo>=</mml:mo>
							<mml:msub>
								<mml:mi>α</mml:mi>
								<mml:mn>0</mml:mn>
							</mml:msub>
							<mml:mo>+</mml:mo>
							<mml:munderover>
								<mml:mo>∑</mml:mo>
								<mml:mrow>
									<mml:mi>j</mml:mi>
									<mml:mo>=</mml:mo>
									<mml:mn>1</mml:mn>
								</mml:mrow>
								<mml:mi>k</mml:mi>
							</mml:munderover>
							<mml:mrow>
								<mml:msub>
									<mml:mi>α</mml:mi>
									<mml:mi>j</mml:mi>
								</mml:msub>
								<mml:msub>
									<mml:mi>X</mml:mi>
									<mml:mi>j</mml:mi>
								</mml:msub>
							</mml:mrow>
							<mml:mo>+</mml:mo>
							<mml:munderover>
								<mml:mo>∑</mml:mo>
								<mml:mrow>
									<mml:mi>j</mml:mi>
									<mml:mo>=</mml:mo>
									<mml:mn>1</mml:mn>
								</mml:mrow>
								<mml:mi>k</mml:mi>
							</mml:munderover>
							<mml:mrow>
								<mml:msub>
									<mml:mi>α</mml:mi>
									<mml:mrow>
										<mml:mi>j</mml:mi>
										<mml:mi>j</mml:mi>
									</mml:mrow>
								</mml:msub>
								<mml:msubsup>
									<mml:mi>X</mml:mi>
									<mml:mi>j</mml:mi>
									<mml:mn>2</mml:mn>
								</mml:msubsup>
							</mml:mrow>
							<mml:mo>+</mml:mo>
							<mml:munder>
								<mml:mo>∑</mml:mo>
								<mml:mrow>
									<mml:mi>j</mml:mi>
									<mml:mo>&lt;</mml:mo>
									<mml:mn>1</mml:mn>
								</mml:mrow>
							</mml:munder>
							<mml:mrow>
								<mml:munderover>
									<mml:mo>∑</mml:mo>
									<mml:mrow>
										<mml:mi>l</mml:mi>
										<mml:mo>=</mml:mo>
										<mml:mn>2</mml:mn>
									</mml:mrow>
									<mml:mi>k</mml:mi>
								</mml:munderover>
								<mml:mrow>
									<mml:msub>
										<mml:mi>α</mml:mi>
										<mml:mrow>
											<mml:mi>j</mml:mi>
											<mml:mi>L</mml:mi>
										</mml:mrow>
									</mml:msub>
									<mml:msub>
										<mml:mi>X</mml:mi>
										<mml:mi>j</mml:mi>
									</mml:msub>
									<mml:msub>
										<mml:mi>X</mml:mi>
										<mml:mi>l</mml:mi>
									</mml:msub>
								</mml:mrow>
							</mml:mrow>
							<mml:mo>+</mml:mo>
							<mml:mi>ɛ</mml:mi>
						</mml:math>
					</disp-formula>
				</p>
				<p>The equation system (1) can be resolved by the Method of Least Squares (MLS) and may be written in matrix form (2) [<xref ref-type="bibr" rid="b23-ijms-11-04726">23</xref>], where <italic>y</italic> is the (<italic>n</italic>, 1) vector of measured responses, <italic>X</italic> is the (<italic>n</italic>, <italic>p</italic>) matrix of the mathematical model of factor levels, and <italic>α</italic> is the (<italic>p</italic>, 1) vector of unknown coefficients.
<disp-formula id="FD2">
						<label>(2)</label>
						<mml:math id="mm2" display="block">
							<mml:mtable>
								<mml:mtr>
									<mml:mtd>
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													<mml:mrow>
														<mml:mrow>
															<mml:mo>[</mml:mo>
															<mml:mrow>
																<mml:mtable>
																	<mml:mtr>
																		<mml:mtd>
																			<mml:mrow>
																				<mml:msub>
																					<mml:mi>y</mml:mi>
																					<mml:mn>1</mml:mn>
																				</mml:msub>
																			</mml:mrow>
																		</mml:mtd>
																	</mml:mtr>
																	<mml:mtr>
																		<mml:mtd>
																			<mml:mrow>
																				<mml:msub>
																					<mml:mi>y</mml:mi>
																					<mml:mn>2</mml:mn>
																				</mml:msub>
																			</mml:mrow>
																		</mml:mtd>
																	</mml:mtr>
																	<mml:mtr>
																		<mml:mtd>
																			<mml:mo>.</mml:mo>
																		</mml:mtd>
																	</mml:mtr>
																	<mml:mtr>
																		<mml:mtd>
																			<mml:mo>.</mml:mo>
																		</mml:mtd>
																	</mml:mtr>
																	<mml:mtr>
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																			<mml:mo>.</mml:mo>
																		</mml:mtd>
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																	<mml:mtr>
																		<mml:mtd>
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																				<mml:msub>
																					<mml:mi>y</mml:mi>
																					<mml:mi>n</mml:mi>
																				</mml:msub>
																			</mml:mrow>
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																	</mml:mtr>
																</mml:mtable>
															</mml:mrow>
															<mml:mo>]</mml:mo>
														</mml:mrow>
													</mml:mrow>
													<mml:mo stretchy="true">︸</mml:mo>
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									</mml:mtd>
									<mml:mtd>
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									</mml:mtd>
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													<mml:mrow>
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															<mml:mrow>
																<mml:mtable>
																	<mml:mtr>
																		<mml:mtd>
																			<mml:mn>1</mml:mn>
																		</mml:mtd>
																		<mml:mtd>
																			<mml:mrow>
																				<mml:msub>
																					<mml:mi>x</mml:mi>
																					<mml:mrow>
																						<mml:mn>11</mml:mn>
																					</mml:mrow>
																				</mml:msub>
																			</mml:mrow>
																		</mml:mtd>
																		<mml:mtd>
																			<mml:mo>.</mml:mo>
																		</mml:mtd>
																		<mml:mtd>
																			<mml:mo>.</mml:mo>
																		</mml:mtd>
																		<mml:mtd>
																			<mml:mo>.</mml:mo>
																		</mml:mtd>
																		<mml:mtd>
																			<mml:mrow>
																				<mml:msub>
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																		</mml:mtd>
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															</mml:mrow>
															<mml:mo>]</mml:mo>
														</mml:mrow>
													</mml:mrow>
													<mml:mo stretchy="true">︸</mml:mo>
												</mml:munder>
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											</mml:munder>
										</mml:mrow>
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															</mml:mrow>
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										</mml:mrow>
									</mml:mtd>
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									</mml:mtd>
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										<mml:mrow>
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												<mml:munder>
													<mml:mrow>
														<mml:mrow>
															<mml:mo>[</mml:mo>
															<mml:mrow>
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																					<mml:mi>ɛ</mml:mi>
																					<mml:mn>1</mml:mn>
																				</mml:msub>
																			</mml:mrow>
																		</mml:mtd>
																	</mml:mtr>
																	<mml:mtr>
																		<mml:mtd>
																			<mml:mrow>
																				<mml:msub>
																					<mml:mi>ɛ</mml:mi>
																					<mml:mn>2</mml:mn>
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																			<mml:mo>.</mml:mo>
																		</mml:mtd>
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															</mml:mrow>
															<mml:mo>]</mml:mo>
														</mml:mrow>
													</mml:mrow>
													<mml:mo stretchy="true">︸</mml:mo>
												</mml:munder>
												<mml:mi>ɛ</mml:mi>
											</mml:munder>
										</mml:mrow>
									</mml:mtd>
								</mml:mtr>
							</mml:mtable>
						</mml:math>
					</disp-formula>
				</p>
				<p>With <italic>n</italic> responses, and <italic>y</italic> and <italic>p</italic> coefficients in the model, there are <italic>n</italic> equations and <italic>n</italic> + <italic>p</italic> unknowns. To solve the system, the Method of Least Squares is used. After some calculations, the solution of system (2) is given by <xref ref-type="disp-formula" rid="FD3">Equation (3)</xref>:
<disp-formula id="FD3">
						<label>(3)</label>
						<mml:math id="mm3" display="block">
							<mml:mover accent="true">
								<mml:mi>a</mml:mi>
								<mml:mo>^</mml:mo>
							</mml:mover>
							<mml:mo>=</mml:mo>
							<mml:msup>
								<mml:mrow>
									<mml:mo stretchy="false">(</mml:mo>
									<mml:msup>
										<mml:mtext/>
										<mml:mi>t</mml:mi>
									</mml:msup>
									<mml:mi>X</mml:mi>
									<mml:mi>X</mml:mi>
									<mml:mo stretchy="false">)</mml:mo>
								</mml:mrow>
								<mml:mrow>
									<mml:mo>−</mml:mo>
									<mml:mn>1</mml:mn>
								</mml:mrow>
							</mml:msup>
							<mml:msup>
								<mml:mtext/>
								<mml:mi>t</mml:mi>
							</mml:msup>
							<mml:mi>X</mml:mi>
							<mml:mi>Y</mml:mi>
						</mml:math>
					</disp-formula>
				</p>
				<p>The low and high levels of variables (factors) are denoted by −1 and 1, respectively. The levels of <italic>X<sub>i</sub>
					</italic> variable are coded and obtained from <xref ref-type="disp-formula" rid="FD4">Equation (4)</xref>, where <italic>X<sub>i</sub>
					</italic> is the independent variable coded value, <italic>A<sub>i</sub>
					</italic> is the independent variable real value, <italic>A</italic>
					<sub>0</sub> is the independent variable real value on the center point and Δ<italic>A<sub>i</sub>
					</italic> is the step change value.</p>
				<disp-formula id="FD4">
					<label>(4)</label>
					<mml:math id="mm4" display="block">
						<mml:msub>
							<mml:mi>X</mml:mi>
							<mml:mi>i</mml:mi>
						</mml:msub>
						<mml:mo>=</mml:mo>
						<mml:mrow>
							<mml:mo>(</mml:mo>
							<mml:mrow>
								<mml:msub>
									<mml:mi>A</mml:mi>
									<mml:mi>i</mml:mi>
								</mml:msub>
								<mml:mo>−</mml:mo>
								<mml:msub>
									<mml:mi>A</mml:mi>
									<mml:mn>0</mml:mn>
								</mml:msub>
							</mml:mrow>
							<mml:mo>)</mml:mo>
						</mml:mrow>
						<mml:mo>/</mml:mo>
						<mml:mi>Δ</mml:mi>
						<mml:msub>
							<mml:mi>A</mml:mi>
							<mml:mi>i</mml:mi>
						</mml:msub>
						<mml:mi> </mml:mi>
					</mml:math>
				</disp-formula>
				<p>The most used second-order symmetric designs for the RSM are: The general factorial design, the Box-Behnken design, the Central Composite Design and Doehlert’s design. These differ by the location of the experimental points in the studied region, the number of factor levels kept, the number of experiments and the blocks [<xref ref-type="bibr" rid="b14-ijms-11-04726">14</xref>].</p>
			</sec>
			<sec sec-type="methods">
				<label>2.5.</label>
				<title>Global Predicted Capacity, Analysis and Diagnostic of the Model</title>
				<p>When the relationship between the variables and the response has been established by the modeling, predictions can be made. However, the mathematical model obtained after adjustments to experimental results, sometimes cannot describe the studied domain. It is necessary to analyze and examine the diagnostic of the obtained model to evaluate its pertinence to describe the studied phenomena. If the analysis and the diagnostic are satisfactory, the defined model can be used in predictions, but only if the conditions are identical and the standard error is present.</p>
				<p>The global predicted capacity of a mathematical model is generally explained by the coefficient of determination <italic>R</italic>
					<sup>2</sup> A large value of this coefficient does not necessarily suggest that the model is a good one. The <italic>R</italic>
					<sup>2</sup> value improves if the variables are high even if they are not statistically significant [<xref ref-type="bibr" rid="b24-ijms-11-04726">24</xref>]. Because <italic>R</italic>
					<sup>2</sup> alone is not a measure of the model’s accuracy, it is also necessary to take into account the value of the Absolute Average Deviation (AAD) [<xref ref-type="bibr" rid="b13-ijms-11-04726">13</xref>]. The AAD is a direct method which describes deviations, so its value must be as small as possible between the measured and the predicted data [<xref ref-type="bibr" rid="b13-ijms-11-04726">13</xref>].</p>
				<p>During the analysis, the statistical global significance of the model is determined by variance analysis (ANOVA, Fisher’s Test: <italic>F-</italic>value). The lack of fit test is also applied to estimate the model (fitting). The statistical significance of the model terms is determined by the Student test (<italic>t-</italic>value). The model is adjusted to the experimental data when it is significant and when the lack of fit value of the model is not significant. The truth of the hypothesis related to the homoscedasticity and the normal distribution of variations is very important during the diagnostic. The visual analysis of graphical plots of deviations gives some information about the robustness of the model. Concerning the influential observations on the predictions of the model, the main statistics are the leverage, Cook’s distance and the DFFITS.</p>
			</sec>
			<sec>
				<label>2.6.</label>
				<title>Determination of the Optimum</title>
				<p>Depending on the object, the optimal point can be characterized as the maximum, the minimum or the saddle. The value of the maximal point can be calculated from the first derivative of the model’s equation. The positive values of the explanatory variables, where the first derivative is equal to zero, correspond to the optimal values. The accuracy of the values can be verified by comparing the predicted values obtained with the mathematical model, and the measured values obtained after the experiments with the same conditions.</p>
			</sec>
			<sec>
				<label>2.7.</label>
				<title>Application of the RSM for Optimization of the Culture Medium B5</title>
				<p>The aim of this paper is to optimize the composition of the medium, which influences the response to elicitation [<xref ref-type="bibr" rid="b12-ijms-11-04726">12</xref>,<xref ref-type="bibr" rid="b25-ijms-11-04726">25</xref>,<xref ref-type="bibr" rid="b26-ijms-11-04726">26</xref>]. This work succeeds a precedent paper [<xref ref-type="bibr" rid="b12-ijms-11-04726">12</xref>], where we applied the screening analysis to the influence of minerals on the hyoscyamine content of elicited HRs.</p>
				<p>As has been reported in [<xref ref-type="bibr" rid="b12-ijms-11-04726">12</xref>], nitrate [NO<sub>3</sub>
					<sup>−</sup>], calcium [Ca<sup>2+</sup>], the combination [NO<sub>3</sub>
					<sup>−</sup> × Ca<sup>2+</sup>] and phosphorus [H<sub>2</sub>PO<sub>4</sub>
					<sup>−</sup>], are the most significant factors in the intensity of the response to elicitation for hyoscyamine production by HRs. Although phosphorus [H<sub>2</sub>PO<sub>4</sub>
					<sup>−</sup>] is statistically efficient, only [NO<sub>3</sub>
					<sup>−</sup>] and [Ca<sup>2+</sup>] are used for optimization by RSM. Sucrose is also included for optimization due to its effect on biomass and alkaloid production [<xref ref-type="bibr" rid="b6-ijms-11-04726">6</xref>,<xref ref-type="bibr" rid="b8-ijms-11-04726">8</xref>]. The minimal and maximal values of nitrate and calcium have been selected from the precedent results of Amdoun <italic>et al.</italic> [<xref ref-type="bibr" rid="b12-ijms-11-04726">12</xref>]. The real values of the concentrations have been codified by the <xref ref-type="disp-formula" rid="FD4">Equation (4)</xref> (see Section 2.4).</p>
				<p>The Central Composite Design (CCD) is used to obtain the measured responses which will be useful for the mathematical model. The CCD was presented by Box and Wilson in the 1950s. It consists of the following two parts:
<list list-type="bullet">
						<list-item>
							<p>A factorial design with at least one experimental point located in the center of the experimental area;</p>
						</list-item>
						<list-item>
							<p>A star design whose axial points <italic>−α</italic> and <italic>+α</italic> are located on the axis of each factor. This design is particularly adapted to the progressive acquisition of results with a factorial design 2<sup>k</sup>.</p>
						</list-item>
					</list>
				</p>
				<p>It is necessary to carry out the experiments corresponding to the star design’s points and to calculate whether the results are explained by the linear model. <xref ref-type="fig" rid="f1-ijms-11-04726">Figure 1</xref> shows the studied experimental region, the range and the levels of the studied variables. Five levels have been considered for each of the three studied factors (NO<sub>3</sub>
					<sup>−</sup>, Ca<sup>2+</sup> and sucrose). So, the application of CCD consists of carrying out 20 experiments combining three factors, six of which are located in the center of the studied region. The optimal criterion is orthogonality, in this case <italic>α</italic> calculated is equal to ±1.52 [<xref ref-type="bibr" rid="b27-ijms-11-04726">27</xref>]. Each point (R<sub>1</sub>…R<sub>20</sub>) corresponds to one experiment. The points R<sub>1</sub> to R<sub>8</sub> represent the factorial design 2<sup>k</sup>. The points R<sub>9</sub> to R<sub>14</sub> are the star design. The points R<sub>15</sub> to R<sub>20</sub> represent the experiment done in the central experimental design.</p>
				<p>For all experiments, the HRs cultures were performed in Petri dishes containing 20 mL of B5 medium [<xref ref-type="bibr" rid="b28-ijms-11-04726">28</xref>]. In order to avoid other modifications of the medium due to the addition of other counterions, each element was chosen and then HNO<sub>3</sub> for [NO<sub>3</sub>
					<sup>−</sup>] and Ca(OH)<sub>2</sub> for [Ca<sup>2+</sup>] were added to the medium before adjustment of the pH to 5.8 [<xref ref-type="bibr" rid="b29-ijms-11-04726">29</xref>]. The quantity of inoculum for each dish was 0.3 g fresh weight from the root tips of HRs of <italic>Datura stramonium</italic>. The measured response was the hyoscyamine level (mg/L). The averages were calculated from the three replicates. The control corresponds to the same HRs line; in the same B5 medium containing 25 mM [NO<sub>3</sub>
					<sup>−</sup>], 1.0 mM [Ca<sup>2+</sup>] and 3% sucrose; and the same conditions of temperature and darkness. Dry weight was obtained by oven drying the HRs for 48 h at 40 °C. The final dry biomass is expressed by the average of the three values with a precision balance.</p>
			</sec>
		</sec>
		<sec sec-type="results|discussion">
			<label>3.</label>
			<title>Results and Discussion</title>
			<sec>
				<label>3.1.</label>
				<title>Global Predictivity of the Model</title>
				<p>The coefficient of determination <italic>R</italic>
					<sup>2</sup> measures the variability explained by the factors and their interactions in the observed responses [<xref ref-type="bibr" rid="b30-ijms-11-04726">30</xref>]. It is 0.97 for the model, from which it can be concluded that 97% of the HS level of elicited HRs is attributed to independent variables and only 3% of the total variability is not explained by the model. The AAD value is low (1.2%) and the value of deviation is σ = 0.9. Thus, the model explains the global variability; it is globally predictive.</p>
			</sec>
			<sec sec-type="methods">
				<label>3.2.</label>
				<title>Analysis of the Quadratic Model</title>
				<p>The <italic>F</italic>-value and the value of probability show that the model is statistically significant. The lack of fit test is not significant (<xref ref-type="table" rid="t1-ijms-11-04726">Table 1</xref>), which indicates that the model fits well with the experimental data.</p>
				<p>All the linear terms related to [NO<sub>3</sub>
					<sup>−</sup>], [Ca<sup>2+</sup>], [NO<sub>3</sub>
					<sup>−</sup>/Ca<sup>2+</sup>] interaction and the sucrose effect are significantly positive (<xref ref-type="table" rid="t2-ijms-11-04726">Table 2</xref>). The linear effect of the latter is almost identical to that of [Ca<sup>2+</sup>]. As the concentrations of these three elements increase in the B5 medium, the response to elicitation of HRs becomes more significant up to a certain limit where the response is reduced.</p>
				<p>The beneficial effect of [NO<sub>3</sub>
					<sup>−</sup>] is twofold: it improves the biomass [<xref ref-type="bibr" rid="b7-ijms-11-04726">7</xref>,<xref ref-type="bibr" rid="b8-ijms-11-04726">8</xref>,<xref ref-type="bibr" rid="b12-ijms-11-04726">12</xref>] and the HS production by HRs simultaneously [<xref ref-type="bibr" rid="b8-ijms-11-04726">8</xref>,<xref ref-type="bibr" rid="b12-ijms-11-04726">12</xref>]. It is one of the crucial elements of the medium to improve the level of HS in elicited HRs. Effectively, its deficiency during the first week of culture, negatively affects the response to elicitation of HRs [<xref ref-type="bibr" rid="b12-ijms-11-04726">12</xref>]. Moreover, its excess in the medium (from 95 mM) shows a negative effect on the biomass [<xref ref-type="bibr" rid="b8-ijms-11-04726">8</xref>,<xref ref-type="bibr" rid="b12-ijms-11-04726">12</xref>,<xref ref-type="bibr" rid="b31-ijms-11-04726">31</xref>]. The [Ca<sup>2+</sup>] is in second position for increasing the HS level after elicitation [<xref ref-type="bibr" rid="b12-ijms-11-04726">12</xref>]. The [Ca<sup>2+</sup>] ion activates Putrescine Methyl Transferase (PMT), which is one of the enzymes involved in the biosynthesis of tropane alkaloids [<xref ref-type="bibr" rid="b5-ijms-11-04726">5</xref>,<xref ref-type="bibr" rid="b9-ijms-11-04726">9</xref>]. It is a secondary messenger and participates in signal transduction and cellular regulation. Its intracellular flux is activated by a stimulus (such as elicitation) and also induces the defense reactions [<xref ref-type="bibr" rid="b26-ijms-11-04726">26</xref>,<xref ref-type="bibr" rid="b32-ijms-11-04726">32</xref>]. For sucrose, Saenz-Carbonell and Loyola-Vargas [<xref ref-type="bibr" rid="b6-ijms-11-04726">6</xref>] showed that it improves the specific production of hyoscyamine. In our case, sucrose particularly increases the biomass.</p>
			</sec>
			<sec>
				<label>3.3.</label>
				<title>Diagnostic of the Model</title>
				<sec>
					<label>3.3.1.</label>
					<title>Diagnostic Plot</title>
					<p>The validity of a model can be evaluated by the residual analysis. We defined as residual, the difference between the observed values and the calculated values obtained by the model. It is the part which is not explained by the equation of the model. This analysis can also detect some outliers among the total data. We use principally graphical methods for the residual analysis, such as the graphical presentation of the residuals as a function of the estimated values [<xref ref-type="bibr" rid="b33-ijms-11-04726">33</xref>]. This is essential to check the homoscedasticity hypothesis of the errors. If the selected model is adequate, the residuals are distributed uniformly on a horizontal band of the graph. The analysis of <xref ref-type="fig" rid="f2-ijms-11-04726">Figure 2A</xref> shows a random distribution of the residuals as a function of the predicted values, so the homoscedasticity hypothesis is verified. Another crucial hypothesis on the residual is the normal distribution. The graphical representation of the residuals is an important tool for diagnostics [<xref ref-type="bibr" rid="b34-ijms-11-04726">34</xref>,<xref ref-type="bibr" rid="b35-ijms-11-04726">35</xref>]. <xref ref-type="fig" rid="f2-ijms-11-04726">Figure 2B</xref> shows a normal distribution of the Studentized residuals, which are independent of each other.</p>
				</sec>
				<sec>
					<label>3.3.2.</label>
					<title>Influential Observations and Accommodation</title>
					<p>If the value of an observation diverges from the supposed form of the distribution of the total observations, it is called an outlier. If this form is modified, the observation can converge with the new model [<xref ref-type="bibr" rid="b33-ijms-11-04726">33</xref>]. After the detection of outlier observations, the accommodation can be done in different ways, for example by complementary data, re-specifying the model or removing observations [<xref ref-type="bibr" rid="b36-ijms-11-04726">36</xref>]. An outlier value is called an influential observation if its presence in the data affects the estimated coefficients of the model [<xref ref-type="bibr" rid="b36-ijms-11-04726">36</xref>]. The classical measurement of the influential observations on the predictions of a model are the leverage <italic>h<sub>i</sub>
						</italic>, Cook’s distance and DFFITS (<xref ref-type="table" rid="t3-ijms-11-04726">Table 3</xref>).</p>
					<p>We called the leverage <italic>h<sub>i</sub>
						</italic>, for an observation <italic>i</italic> as the estimation of the <italic>i</italic>
						<sup>th</sup> variable response which is influenced by the value of the corresponding independent variable <italic>X<sub>i</sub>
						</italic>; <italic>h<sub>i</sub>
						</italic> is between 0 to 1 [<xref ref-type="bibr" rid="b33-ijms-11-04726">33</xref>]. <xref ref-type="table" rid="t3-ijms-11-04726">Table 3</xref> does not show extreme values concerning <italic>h<sub>i</sub>
						</italic> for the global observations. Nevertheless, the values of the observations R<sub>1</sub> to R<sub>8</sub> are close to 1. The <italic>h<sub>i</sub>
						</italic> does not take into consideration the residual of the observation so, to complete the diagnostic, Cook’s distance and the DFFITS are examined. The latter are close to leverage and residuals. Cook’s distance of an observation is a measurement of the observation’s influence on the total predictions of the model. The value of Cook’s distance must be &lt;1 [<xref ref-type="bibr" rid="b37-ijms-11-04726">37</xref>]. The observations R<sub>4</sub> and R<sub>5</sub> show a main influence on the global predictions of the model (<xref ref-type="table" rid="t3-ijms-11-04726">Table 3</xref>). The DFFITS measurement of an observation is the measurement of this observation’s influence on its value’s predictivity by the model. The DFFITS value could be less than 1 [<xref ref-type="bibr" rid="b38-ijms-11-04726">38</xref>]. <xref ref-type="table" rid="t3-ijms-11-04726">Table 3</xref> shows that the experiments R<sub>2</sub> to R<sub>7</sub>, R<sub>9</sub>, R<sub>13</sub> and R<sub>14</sub> have crucial influences. From this diagnostic, we expect deviations if we are looking at the predictions in the experimental domain near these points. To improve the model’s accuracy, the first operation is to select the terms which are most significant. In this case, the model can be written as:
<disp-formula id="FD5">
							<label>(5)</label>
							<mml:math id="mm5" display="block">
								<mml:msub>
									<mml:mover accent="true">
										<mml:mi>Y</mml:mi>
										<mml:mo>^</mml:mo>
									</mml:mover>
									<mml:mrow>
										<mml:mi>H</mml:mi>
										<mml:mi>S</mml:mi>
									</mml:mrow>
								</mml:msub>
								<mml:mo>=</mml:mo>
								<mml:mn>104.7</mml:mn>
								<mml:mo>+</mml:mo>
								<mml:mn>10.5</mml:mn>
								<mml:msub>
									<mml:mi>X</mml:mi>
									<mml:mn>1</mml:mn>
								</mml:msub>
								<mml:mo>+</mml:mo>
								<mml:mn>5.5</mml:mn>
								<mml:msub>
									<mml:mi>X</mml:mi>
									<mml:mn>2</mml:mn>
								</mml:msub>
								<mml:mo>+</mml:mo>
								<mml:mn>4.2</mml:mn>
								<mml:msub>
									<mml:mi>X</mml:mi>
									<mml:mn>3</mml:mn>
								</mml:msub>
								<mml:mo>+</mml:mo>
								<mml:mn>3.5</mml:mn>
								<mml:msub>
									<mml:mi>X</mml:mi>
									<mml:mn>1</mml:mn>
								</mml:msub>
								<mml:msub>
									<mml:mi>X</mml:mi>
									<mml:mn>2</mml:mn>
								</mml:msub>
								<mml:mo>−</mml:mo>
								<mml:mn>16.4</mml:mn>
								<mml:msubsup>
									<mml:mi>X</mml:mi>
									<mml:mn>1</mml:mn>
									<mml:mn>2</mml:mn>
								</mml:msubsup>
								<mml:mo>−</mml:mo>
								<mml:mn>14.4</mml:mn>
								<mml:msubsup>
									<mml:mi>X</mml:mi>
									<mml:mn>2</mml:mn>
									<mml:mn>2</mml:mn>
								</mml:msubsup>
								<mml:mo>−</mml:mo>
								<mml:mn>14.5</mml:mn>
								<mml:msubsup>
									<mml:mi>X</mml:mi>
									<mml:mn>3</mml:mn>
									<mml:mn>2</mml:mn>
								</mml:msubsup>
								<mml:mi> </mml:mi>
							</mml:math>
						</disp-formula>
					</p>
					<p>After this operation, only the observations R<sub>4</sub>, R<sub>8</sub> and R<sub>14</sub> presented main DFFITS values (<xref ref-type="table" rid="t3-ijms-11-04726">Table 3</xref>). The data needed no transformation (<italic>Y</italic>
						<sup>λ</sup>), as confirmed by the Box-Cox Plot exam (<xref ref-type="fig" rid="f3-ijms-11-04726">Figure 3</xref>). We decided to adjust the outliers, which originate from measurement errors, by their removal. After the removal of the R<sub>4</sub> observation, which has the highest DFFITS value, only the R<sub>14</sub> observation shows an extreme value. After this elimination, the diagnostic of influential observations reveals no outliers. We can observe that the normal distribution of residuals and their independence, the homoscedasticity and the statistical significance of the model are still verified.</p>
					<p>The removal of the observations R<sub>4</sub> and R<sub>14</sub> improves the accuracy of the estimated coefficients. The CV% goes from 2.0 to 0.9, in this case the AAD value was calculated as 0.4%. More precisely, it is the model <italic>Ŷ<sub>HS</sub>
						</italic> (<xref ref-type="disp-formula" rid="FD6">Equation 6</xref>) which has been selected for the response surface methodology analysis and the determination of optimal concentrations.
<disp-formula id="FD6">
							<label>(6)</label>
							<mml:math id="mm6" display="block">
								<mml:msub>
									<mml:mover accent="true">
										<mml:mi>Y</mml:mi>
										<mml:mo>^</mml:mo>
									</mml:mover>
									<mml:mrow>
										<mml:mi>H</mml:mi>
										<mml:mi>S</mml:mi>
									</mml:mrow>
								</mml:msub>
								<mml:mo>=</mml:mo>
								<mml:mn>104.7</mml:mn>
								<mml:mo>+</mml:mo>
								<mml:mn>11.0</mml:mn>
								<mml:msub>
									<mml:mi>X</mml:mi>
									<mml:mn>1</mml:mn>
								</mml:msub>
								<mml:mo>+</mml:mo>
								<mml:mn>6.0</mml:mn>
								<mml:msub>
									<mml:mi>X</mml:mi>
									<mml:mn>2</mml:mn>
								</mml:msub>
								<mml:mo>+</mml:mo>
								<mml:mn>4.1</mml:mn>
								<mml:msub>
									<mml:mi>X</mml:mi>
									<mml:mn>3</mml:mn>
								</mml:msub>
								<mml:mo>+</mml:mo>
								<mml:mn>4.3</mml:mn>
								<mml:msub>
									<mml:mi>X</mml:mi>
									<mml:mn>1</mml:mn>
								</mml:msub>
								<mml:msub>
									<mml:mi>X</mml:mi>
									<mml:mn>2</mml:mn>
								</mml:msub>
								<mml:mo>−</mml:mo>
								<mml:mn>16.4</mml:mn>
								<mml:msubsup>
									<mml:mi>X</mml:mi>
									<mml:mn>1</mml:mn>
									<mml:mn>2</mml:mn>
								</mml:msubsup>
								<mml:mo>−</mml:mo>
								<mml:mn>14.4</mml:mn>
								<mml:msubsup>
									<mml:mi>X</mml:mi>
									<mml:mn>2</mml:mn>
									<mml:mn>2</mml:mn>
								</mml:msubsup>
								<mml:mo>−</mml:mo>
								<mml:mn>13.7</mml:mn>
								<mml:msubsup>
									<mml:mi>X</mml:mi>
									<mml:mn>3</mml:mn>
									<mml:mn>2</mml:mn>
								</mml:msubsup>
								<mml:mi> </mml:mi>
							</mml:math>
						</disp-formula>
					</p>
				</sec>
			</sec>
			<sec sec-type="methods">
				<label>3.5.</label>
				<title>Response Surface (RS) Analysis and Determination of Optimal Concentrations</title>
				<p>The graphical representation of the standard error (StdErr) function (<xref ref-type="fig" rid="f4-ijms-11-04726">Figure 4A</xref>) is symmetric and its highest value (&gt;1) is obtained in the four corners of the experimental area. Nevertheless, its value is 0.3 inside the central area. This low value is related to a good model quality, so the model <xref ref-type="disp-formula" rid="FD6">Equation 6</xref> can be used to evaluate the values of the <italic>Ŷ<sub>HS</sub>
					</italic> response in the global experimental domain.</p>
				<p>The RS is the graphical representation of the mathematical model in the experimental domain. <xref ref-type="fig" rid="f4-ijms-11-04726">Figure 4B</xref> shows the response surface for the HS level from elicited HRs as a function of [NO<sub>3</sub>
					<sup>−</sup>] (<italic>X</italic>
					<sub>1</sub>) and [Ca<sup>2+</sup>] (<italic>X</italic>
					<sub>2</sub>). The sucrose value has been fixed to its coded value 0.0 (equivalent to 40 mg/L). From this figure, for different combinations of [NO<sub>3</sub>
					<sup>−</sup>] and [Ca<sup>2+</sup>], the responses can be predicted. This is an effective tool to see the simultaneous effect of [NO<sub>3</sub>
					<sup>−</sup>] and [Ca<sup>2+</sup>] on the HS level from elicited HRs. The improvement in the HS level is correlated with the increasing [NO<sub>3</sub>
					<sup>−</sup>, Ca<sup>2+</sup>] concentrations until limits where the response decreases, beyond the central zone of the experimental domain (<xref ref-type="fig" rid="f4-ijms-11-04726">Figure 4B</xref>). The beneficial effect of the combination has been described by Amdoun <italic>et al.</italic> [<xref ref-type="bibr" rid="b12-ijms-11-04726">12</xref>]. In the case of a low response with low [NO<sub>3</sub>
					<sup>−</sup>, Ca<sup>2+</sup>] values, the cells are in a critical condition for plant defense reactions [<xref ref-type="bibr" rid="b12-ijms-11-04726">12</xref>]. The high [NO<sub>3</sub>
					<sup>−</sup>, Ca<sup>2+</sup>] values have a negative impact on the biomass and also on the HS level. Our results are identical with those obtained by Sikuli and Demeyer [<xref ref-type="bibr" rid="b7-ijms-11-04726">7</xref>] for the biomass. These authors found low values of biomass and HS for HRs of <italic>Datura stramonium</italic> cultivated in B5 medium with high [NO<sub>3</sub>
					<sup>−</sup>, Ca<sup>2+</sup>] concentrations. This effect is greater when the [Ca<sup>2+</sup>] value is high. We also note that the nitrate reductase activity measured in the HRs is high in this medium [<xref ref-type="bibr" rid="b7-ijms-11-04726">7</xref>].</p>
				<p>All the combinations [NO<sub>3</sub>
					<sup>−</sup>, Ca<sup>2+</sup>] located in the red area (<xref ref-type="fig" rid="f4-ijms-11-04726">Figure 4B</xref>) illustrate the optimal conditions. Nevertheless, the local optimum concentrations correspond to positive values of variables where the first derivatives (δ<italic>Y<sub>HS</sub>
					</italic>/<italic>x</italic>
					<sub>1</sub>; δ<italic>Y<sub>HS</sub>
					</italic>/<italic>x</italic>
					<sub>2</sub>; δ<italic>Y<sub>HS</sub>
					</italic>/<italic>x</italic>
					<sub>3</sub>) of the model <xref ref-type="disp-formula" rid="FD6">Equation 6</xref> cancel each other out. The optimal concentrations in coded values are 0.37 for [NO<sub>3</sub>
					<sup>−</sup>], 0.26 for [Ca<sup>2+</sup>] and 0.14 for sucrose. This is equivalent to 79.1 mM, 11.4 mM and 42.9 g/L respectively in real values and corresponds to the optimized B5 medium (B5-OP). These optimal calculated concentrations are located in the area where the standard error function is lower and where the predicted accuracy of the model <xref ref-type="disp-formula" rid="FD6">Equation 6</xref> is confirmed.</p>
				<p>According to the simulation of the HS level from elicited HRs, cultured in B5-OP medium, the predicted value is 107.90 mg/L. The calculated prediction interval, at 95%, is <italic>PI</italic> = [106.17; 109.72]. The measured level for the same concentrations and in the same conditions is 110.3 ±1.4 mg/L. This value is in the 95% <italic>PI</italic> range and validates the optimal concentrations of [NO<sub>3</sub>
					<sup>−</sup>], [Ca<sup>2+</sup>] and sucrose.</p>
			</sec>
			<sec>
				<label>3.6.</label>
				<title>Optimization Level</title>
				<p>
					<xref ref-type="fig" rid="f5-ijms-11-04726">Figures 5A</xref> and <xref ref-type="fig" rid="f5-ijms-11-04726">5B</xref> show a culture of HRs in B5-OP medium in a Petri dish or Erlenmeyer. It displays a high biomass in comparison with HRs cultivated in B5 control (<xref ref-type="fig" rid="f5-ijms-11-04726">Figure 5C</xref>).</p>
				<p>There is a significant improvement in biomass (51.2%) with the B5-OP medium in comparison with the HRs control (<xref ref-type="table" rid="t4-ijms-11-04726">Table 4</xref>). A significant difference was observed for the specific production of HS (mg/g DW) in HRs with or without elicitation. The optimization was determined as 81% and 101.2% for elicited or non-elicited HRs respectively in B5-OP medium.</p>
				<p>Finally, the improvement in the level of HS (mg/L) was 173.6% for non-elicited HRs, and 212% for elicited HRs cultivated in B5-OP, in comparison with the control medium.</p>
			</sec>
		</sec>
		<sec>
			<label>4.</label>
			<title>Conclusion</title>
			<p>The selection of significant statistical variables enables the accuracy of the model to be improved. After the diagnostics, some outliers related to the model with the global terms are eliminated after the screening. This selection of outliers must be carried out carefully; their removal is implemented when they are due to pure error. In our case, only two observations were removed after the study of the screening of variables.</p>
			<p>Optimization of the B5 medium improves the response to elicitation. Under optimal conditions, the optimization of the HS level is 212.7% for elicited <italic>Datura stramonium</italic> HRs cultivated in B5-OP medium, in comparison with HRs in the B5 control.</p>
			<p>The optimal concentrations for the selected line and in our conditions are: 79.1 mM, 11.4 mM and 42.9 g/L for [NO<sub>3</sub>
				<sup>−</sup>], [Ca<sup>2+</sup>] and sucrose, respectively. These values correspond to the solutions obtained with the first derivatives of the model. Nevertheless, all the concentrations included in the optimal area of the surface response can be used.</p>
			<p>This new approach to the optimization of B5 medium could be employed to maximize the response to elicitation. The B5-OP medium significantly influenced the biomass and alkaloid production. This was possible by the simulation and the predictability of the quadratic model used. Indeed, unlike classical methods, this mathematical model is not time consuming and a large number of experiments are not needed to optimize the parameters. Mathematical modeling is a powerful tool for biological studies. In this work, by applying the RSM, only 20 experiments were required to optimize the B5 medium composition in terms of [NO<sub>3</sub>
				<sup>−</sup>], [Ca<sup>2+</sup>] and sucrose. This quadratic model led to a demonstration of the effects of these nutrients on the HS level of HRs elicited by Jasmonic Acid (JA).</p>
			<p>However, the HS level of the elicited HRs, cultured in B5-OP medium, can still be improved by an irregular deficiency in [NO<sub>3</sub>
				<sup>−</sup>] [<xref ref-type="bibr" rid="b12-ijms-11-04726">12</xref>]. The feasibility needs to be confirmed and the time and the frequency need to be determined. For production in a bioreactor, it is clear that the optimal concentrations must be added according to the B5 medium volume and the biomass.</p>
		</sec>
	</body>
	<back>
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		<sec sec-type="display-objects">
			<title>Figures and Tables</title>
			<fig id="f1-ijms-11-04726" position="float">
				<label>Figure 1.</label>
				<caption>
					<p>Experimental region and levels of each of the three factors of the CCD (<italic>X<sub>1</sub>
						</italic>: [NO<sub>3</sub>
						<sup>−</sup>], <italic>X<sub>2</sub>
						</italic>: [Ca<sup>2+</sup>] and <italic>X<sub>3</sub>
						</italic>: sucrose).</p>
				</caption>
				<graphic xlink:href="ijms-11-04726f1.gif"/>
			</fig>
			<fig id="f2-ijms-11-04726" position="float">
				<label>Figure 2.</label>
				<caption>
					<p>Diagnostic plot: (<bold>A</bold>) Studentized residuals <italic>versus</italic> predicted values; (<bold>B</bold>) normal probability plot of the studentized residuals.</p>
				</caption>
				<graphic xlink:href="ijms-11-04726f2.gif"/>
			</fig>
			<fig id="f3-ijms-11-04726" position="float">
				<label>Figure 3.</label>
				<caption>
					<p>Box-Cox plot for power transformations (<italic>Y</italic>
						<sup>λ</sup>).</p>
				</caption>
				<graphic xlink:href="ijms-11-04726f3.gif"/>
			</fig>
			<fig id="f4-ijms-11-04726" position="float">
				<label>Figure 4.</label>
				<caption>
					<p>Response Surface plots showing effects of [NO<sub>3</sub>
						<sup>−</sup>] and [Ca<sup>2+</sup>] as a function of standard error (StdErr) (<bold>A</bold>) and the HS level for elicited HRs (<bold>B</bold>).</p>
				</caption>
				<graphic xlink:href="ijms-11-04726f4.gif"/>
			</fig>
			<fig id="f5-ijms-11-04726" position="float">
				<label>Figure 5.</label>
				<caption>
					<p>Appearance of HRs on the 28th day of culture in B5-OP (<bold>A</bold>) in 250 mL Erlenmeyer; (<bold>B</bold>) in Petri dishes and in B5 control (<bold>C</bold>) in Petri dishes.</p>
				</caption>
				<graphic xlink:href="ijms-11-04726f5.gif"/>
			</fig>
			<table-wrap id="t1-ijms-11-04726" position="float">
				<label>Table 1.</label>
				<caption>
					<p>ANOVA table for the quadratic model (results in bold are significant).</p>
				</caption>
				<table frame="hsides" rules="groups">
					<thead>
						<tr>
							<th align="center" valign="bottom">
								<bold>Source</bold>
							</th>
							<th align="center" valign="bottom">
								<bold>Sum of Squares</bold>
							</th>
							<th align="center" valign="bottom">
								<bold>df</bold>
							</th>
							<th align="center" valign="bottom">
								<bold>Mean Square</bold>
							</th>
							<th align="center" valign="bottom">
								<bold>
									<italic>F</italic>-value</bold>
							</th>
							<th align="center" valign="bottom">
								<bold>
									<italic>p</italic>-value</bold>
							</th>
						</tr>
					</thead>
					<tbody>
						<tr>
							<td align="left" valign="top">Model</td>
							<td align="center" valign="top">9537.1</td>
							<td align="center" valign="top">10</td>
							<td align="center" valign="top">953.7</td>
							<td align="center" valign="top">414.1</td>
							<td align="center" valign="top">
								<bold>0.0</bold>
							</td>
						</tr>
						<tr>
							<td align="left" valign="top">Residual</td>
							<td align="center" valign="top">20.7</td>
							<td align="center" valign="top">9</td>
							<td align="center" valign="top">2.3</td>
							<td align="center" valign="top"/>
							<td align="center" valign="top"/>
						</tr>
						<tr>
							<td colspan="6" align="left" valign="top">
								<hr/>
							</td>
						</tr>
						<tr>
							<td align="left" valign="top">Lack of fit</td>
							<td align="center" valign="top">16.1</td>
							<td align="center" valign="top">4</td>
							<td align="center" valign="top">4.0</td>
							<td align="center" valign="top">4.3</td>
							<td align="center" valign="top">0.1</td>
						</tr>
						<tr>
							<td align="left" valign="top">Pure Error</td>
							<td align="center" valign="top">4.7</td>
							<td align="center" valign="top">5</td>
							<td align="center" valign="top">0.9</td>
							<td align="center" valign="top"/>
							<td align="center" valign="top"/>
						</tr>
						<tr>
							<td colspan="6" align="left" valign="top">
								<hr/>
							</td>
						</tr>
						<tr>
							<td align="left" valign="top">Total</td>
							<td align="center" valign="top">9557.8</td>
							<td align="center" valign="top">19</td>
							<td align="center" valign="top"/>
							<td align="center" valign="top"/>
							<td align="center" valign="top"/>
						</tr>
					</tbody>
				</table>
			</table-wrap>
			<table-wrap id="t2-ijms-11-04726" position="float">
				<label>Table 2.</label>
				<caption>
					<p>Analysis terms for the quadratic model (results in bold are significant).</p>
				</caption>
				<table frame="hsides" rules="groups">
					<thead>
						<tr>
							<th align="center" valign="bottom">
								<bold>Model Terms</bold>
							</th>
							<th align="center" valign="bottom">
								<bold>Coefficient Estimate</bold>
							</th>
							<th align="center" valign="bottom">
								<bold>t-statistic</bold>
							</th>
							<th align="center" valign="bottom">
								<bold>
									<italic>p</italic>-value</bold>
							</th>
						</tr>
					</thead>
					<tbody>
						<tr>
							<td align="center" valign="top">
								<underline>Intercept</underline>
							</td>
							<td align="center" valign="top">104.8</td>
							<td align="center" valign="top">172.2</td>
							<td align="center" valign="top">-</td>
						</tr>
						<tr>
							<td align="center" valign="top">
								<italic>x</italic>
								<sub>1</sub>: nitrate</td>
							<td align="center" valign="top">10.5</td>
							<td align="center" valign="top">24.6</td>
							<td align="center" valign="top">
								<bold>0.0</bold>
							</td>
						</tr>
						<tr>
							<td align="center" valign="top">
								<italic>x</italic>
								<sub>2</sub>: calcium</td>
							<td align="center" valign="top">5.5</td>
							<td align="center" valign="top">12.9</td>
							<td align="center" valign="top">
								<bold>0.0</bold>
							</td>
						</tr>
						<tr>
							<td align="center" valign="top">
								<italic>x</italic>
								<sub>3</sub>: sucrose</td>
							<td align="center" valign="top">4.2</td>
							<td align="center" valign="top">9.8</td>
							<td align="center" valign="top">
								<bold>0.0</bold>
							</td>
						</tr>
						<tr>
							<td align="center" valign="top">
								<italic>x</italic>
								<sub>1</sub>
								<italic>x</italic>
								<sub>2</sub>
							</td>
							<td align="center" valign="top">3.5</td>
							<td align="center" valign="top">6.5</td>
							<td align="center" valign="top">
								<bold>0.0</bold>
							</td>
						</tr>
						<tr>
							<td align="center" valign="top">
								<italic>x</italic>
								<sub>1</sub>
								<italic>x</italic>
								<sub>3</sub>
							</td>
							<td align="center" valign="top">1.0</td>
							<td align="center" valign="top">1.9</td>
							<td align="center" valign="top">0.1</td>
						</tr>
						<tr>
							<td align="center" valign="top">
								<italic>x</italic>
								<sub>2</sub>
								<italic>x</italic>
								<sub>3</sub>
							</td>
							<td align="center" valign="top">1.0</td>
							<td align="center" valign="top">1.9</td>
							<td align="center" valign="top">0.1</td>
						</tr>
						<tr>
							<td align="center" valign="top">
								<italic>x</italic>
								<sub>1</sub>
								<sup>2</sup>
							</td>
							<td align="center" valign="top">−16.4</td>
							<td align="center" valign="top">−35.4</td>
							<td align="center" valign="top">
								<bold>0.0</bold>
							</td>
						</tr>
						<tr>
							<td align="center" valign="top">
								<italic>x</italic>
								<sub>2</sub>
								<sup>2</sup>
							</td>
							<td align="center" valign="top">−14.4</td>
							<td align="center" valign="top">−31.1</td>
							<td align="center" valign="top">
								<bold>0.0</bold>
							</td>
						</tr>
						<tr>
							<td align="center" valign="top">
								<italic>x</italic>
								<sub>3</sub>
								<sup>2</sup>
							</td>
							<td align="center" valign="top">−14.5</td>
							<td align="center" valign="top">−31.3</td>
							<td align="center" valign="top">
								<bold>0.0</bold>
							</td>
						</tr>
						<tr>
							<td align="center" valign="top">
								<italic>x</italic>
								<sub>1</sub>
								<italic>x</italic>
								<sub>2</sub>
								<italic>x</italic>
								<sub>3</sub>
							</td>
							<td align="center" valign="top">0.7</td>
							<td align="center" valign="top">1.3</td>
							<td align="center" valign="top">0.2</td>
						</tr>
					</tbody>
				</table>
			</table-wrap>
			<table-wrap id="t3-ijms-11-04726" position="float">
				<label>Table 3.</label>
				<caption>
					<p>Diagnostics for influential observations (Results in bold are outliers).</p>
				</caption>
				<table frame="hsides" rules="groups">
					<thead>
						<tr>
							<th colspan="10" align="center" valign="middle">
								<bold>Model with Full Terms</bold>
							</th>
						</tr>
						<tr>
							<th colspan="10" align="center" valign="middle">
								<hr/>
							</th>
						</tr>
						<tr>
							<th align="center" valign="middle" rowspan="2">
								<bold>Run Order (<italic>n</italic>)</bold>
							</th>
							<th colspan="3" align="center" valign="middle">
								<bold>Variable Code Levels</bold>
								<hr/>
							</th>
							<th align="center" valign="middle" rowspan="2">
								<bold>Measured</bold>
							</th>
							<th align="center" valign="middle" rowspan="2">
								<bold>Predicted</bold>
							</th>
							<th align="center" valign="middle" rowspan="2">
								<bold>Residual</bold>
							</th>
							<th align="center" valign="middle" rowspan="2">
								<bold>
									<italic>h<sub>i</sub>
									</italic> Leverage</bold>
							</th>
							<th align="center" valign="middle" rowspan="2">
								<bold>Cook’s Distance</bold>
							</th>
							<th align="center" valign="middle" rowspan="2">
								<bold>DFFITS</bold>
							</th>
						</tr>
						<tr>
							<th align="center" valign="middle">
								<italic>x</italic>
								<sub>1</sub> [NO<sub>3</sub>
								<sup>−</sup>]</th>
							<th align="center" valign="middle">
								<italic>x</italic>
								<sub>2</sub> [Ca<sup>2+</sup>]</th>
							<th align="center" valign="middle">
								<italic>x</italic>
								<sub>3</sub> [sucrose]</th>
						</tr>
					</thead>
					<tbody>
						<tr>
							<td align="center" valign="top">R<sub>1</sub>
							</td>
							<td align="center" valign="top">−1</td>
							<td align="center" valign="top">−1</td>
							<td align="center" valign="top">−1</td>
							<td align="center" valign="top">43.8</td>
							<td align="center" valign="top">43.9</td>
							<td align="center" valign="top">−0.1</td>
							<td align="center" valign="top">0.8</td>
							<td align="center" valign="top">0.0</td>
							<td align="center" valign="top">−0.4</td>
						</tr>
						<tr>
							<td align="center" valign="top">R<sub>2</sub>
							</td>
							<td align="center" valign="top">1</td>
							<td align="center" valign="top">−1</td>
							<td align="center" valign="top">−1</td>
							<td align="center" valign="top">56.8</td>
							<td align="center" valign="top">57.5</td>
							<td align="center" valign="top">−0.7</td>
							<td align="center" valign="top">0.8</td>
							<td align="center" valign="top">0.5</td>
							<td align="center" valign="top">
								<bold>−2.5</bold>
							</td>
						</tr>
						<tr>
							<td align="center" valign="top">R<sub>3</sub>
							</td>
							<td align="center" valign="top">−1</td>
							<td align="center" valign="top">1</td>
							<td align="center" valign="top">−1</td>
							<td align="center" valign="top">46.8</td>
							<td align="center" valign="top">47.5</td>
							<td align="center" valign="top">−0.7</td>
							<td align="center" valign="top">0.8</td>
							<td align="center" valign="top">0.5</td>
							<td align="center" valign="top">
								<bold>−2.4</bold>
							</td>
						</tr>
						<tr>
							<td align="center" valign="top">R<sub>4</sub>
							</td>
							<td align="center" valign="top">1</td>
							<td align="center" valign="top">1</td>
							<td align="center" valign="top">−1</td>
							<td align="center" valign="top">70.8</td>
							<td align="center" valign="top">72.0</td>
							<td align="center" valign="top">−1.3</td>
							<td align="center" valign="top">0.8</td>
							<td align="center" valign="top">
								<bold>1.7</bold>
							</td>
							<td align="center" valign="top">
								<bold>−5.6</bold>
							</td>
						</tr>
						<tr>
							<td align="center" valign="top">R<sub>5</sub>
							</td>
							<td align="center" valign="top">−1</td>
							<td align="center" valign="top">−1</td>
							<td align="center" valign="top">1</td>
							<td align="center" valign="top">51.2</td>
							<td align="center" valign="top">49.8</td>
							<td align="center" valign="top">1.4</td>
							<td align="center" valign="top">0.8</td>
							<td align="center" valign="top">
								<bold>2.0</bold>
							</td>
							<td align="center" valign="top">
								<bold>6.5</bold>
							</td>
						</tr>
						<tr>
							<td align="center" valign="top">R<sub>6</sub>
							</td>
							<td align="center" valign="top">1</td>
							<td align="center" valign="top">−1</td>
							<td align="center" valign="top">1</td>
							<td align="center" valign="top">65.2</td>
							<td align="center" valign="top">64.4</td>
							<td align="center" valign="top">0.8</td>
							<td align="center" valign="top">0.8</td>
							<td align="center" valign="top">0.7</td>
							<td align="center" valign="top">
								<bold>2.8</bold>
							</td>
						</tr>
						<tr>
							<td align="center" valign="top">R<sub>7</sub>
							</td>
							<td align="center" valign="top">−1</td>
							<td align="center" valign="top">1</td>
							<td align="center" valign="top">1</td>
							<td align="center" valign="top">55.2</td>
							<td align="center" valign="top">54.4</td>
							<td align="center" valign="top">0.8</td>
							<td align="center" valign="top">0.8</td>
							<td align="center" valign="top">0.7</td>
							<td align="center" valign="top">
								<bold>2.9</bold>
							</td>
						</tr>
						<tr>
							<td align="center" valign="top">R<sub>8</sub>
							</td>
							<td align="center" valign="top">1</td>
							<td align="center" valign="top">1</td>
							<td align="center" valign="top">1</td>
							<td align="center" valign="top">86.2</td>
							<td align="center" valign="top">86.0</td>
							<td align="center" valign="top">0.2</td>
							<td align="center" valign="top">0.8</td>
							<td align="center" valign="top">0.1</td>
							<td align="center" valign="top">0.7</td>
						</tr>
						<tr>
							<td align="center" valign="top">R<sub>9</sub>
							</td>
							<td align="center" valign="top">−1.52</td>
							<td align="center" valign="top">0</td>
							<td align="center" valign="top">0</td>
							<td align="center" valign="top">50.0</td>
							<td align="center" valign="top">50.9</td>
							<td align="center" valign="top">−0.9</td>
							<td align="center" valign="top">0.6</td>
							<td align="center" valign="top">0.1</td>
							<td align="center" valign="top">
								<bold>−1.0</bold>
							</td>
						</tr>
						<tr>
							<td align="center" valign="top">R<sub>10</sub>
							</td>
							<td align="center" valign="top">1.52</td>
							<td align="center" valign="top">0</td>
							<td align="center" valign="top">0</td>
							<td align="center" valign="top">83.6</td>
							<td align="center" valign="top">83.0</td>
							<td align="center" valign="top">0.7</td>
							<td align="center" valign="top">0.6</td>
							<td align="center" valign="top">0.1</td>
							<td align="center" valign="top">0.8</td>
						</tr>
						<tr>
							<td align="center" valign="top">R<sub>11</sub>
							</td>
							<td align="center" valign="top">0</td>
							<td align="center" valign="top">−1.52</td>
							<td align="center" valign="top">0</td>
							<td align="center" valign="top">62.3</td>
							<td align="center" valign="top">63.1</td>
							<td align="center" valign="top">−0.8</td>
							<td align="center" valign="top">0.6</td>
							<td align="center" valign="top">0.1</td>
							<td align="center" valign="top">−0.9</td>
						</tr>
						<tr>
							<td align="center" valign="top">R<sub>12</sub>
							</td>
							<td align="center" valign="top">0</td>
							<td align="center" valign="top">1.52</td>
							<td align="center" valign="top">0</td>
							<td align="center" valign="top">80.6</td>
							<td align="center" valign="top">79.9</td>
							<td align="center" valign="top">0.7</td>
							<td align="center" valign="top">0.6</td>
							<td align="center" valign="top">0.1</td>
							<td align="center" valign="top">0.7</td>
						</tr>
						<tr>
							<td align="center" valign="top">R<sub>13</sub>
							</td>
							<td align="center" valign="top">0</td>
							<td align="center" valign="top">0</td>
							<td align="center" valign="top">−1.52</td>
							<td align="center" valign="top">66.7</td>
							<td align="center" valign="top">64.8</td>
							<td align="center" valign="top">1.8</td>
							<td align="center" valign="top">0.6</td>
							<td align="center" valign="top">0.4</td>
							<td align="center" valign="top">
								<bold>2.7</bold>
							</td>
						</tr>
						<tr>
							<td align="center" valign="top">R<sub>14</sub>
							</td>
							<td align="center" valign="top">0</td>
							<td align="center" valign="top">0</td>
							<td align="center" valign="top">1.52</td>
							<td align="center" valign="top">75.5</td>
							<td align="center" valign="top">77.5</td>
							<td align="center" valign="top">−2.0</td>
							<td align="center" valign="top">0.6</td>
							<td align="center" valign="top">0.5</td>
							<td align="center" valign="top">
								<bold>−3.1</bold>
							</td>
						</tr>
						<tr>
							<td align="center" valign="top">R<sub>15</sub>
							</td>
							<td align="center" valign="top">0</td>
							<td align="center" valign="top">0</td>
							<td align="center" valign="top">0</td>
							<td align="center" valign="top">103.8</td>
							<td align="center" valign="top">104. 8</td>
							<td align="center" valign="top">−1.0</td>
							<td align="center" valign="top">0.2</td>
							<td align="center" valign="top">0.0</td>
							<td align="center" valign="top">−0.3</td>
						</tr>
						<tr>
							<td align="center" valign="top">R<sub>16</sub>
							</td>
							<td align="center" valign="top">0</td>
							<td align="center" valign="top">0</td>
							<td align="center" valign="top">0</td>
							<td align="center" valign="top">104.7</td>
							<td align="center" valign="top">104.8</td>
							<td align="center" valign="top">−0.0</td>
							<td align="center" valign="top">0.2</td>
							<td align="center" valign="top">0.0</td>
							<td align="center" valign="top">0.0</td>
						</tr>
						<tr>
							<td align="center" valign="top">R<sub>17</sub>
							</td>
							<td align="center" valign="top">0</td>
							<td align="center" valign="top">0</td>
							<td align="center" valign="top">0</td>
							<td align="center" valign="top">105.1</td>
							<td align="center" valign="top">104.8</td>
							<td align="center" valign="top">0.3</td>
							<td align="center" valign="top">0.2</td>
							<td align="center" valign="top">0.0</td>
							<td align="center" valign="top">0.1</td>
						</tr>
						<tr>
							<td align="center" valign="top">R<sub>18</sub>
							</td>
							<td align="center" valign="top">0</td>
							<td align="center" valign="top">0</td>
							<td align="center" valign="top">0</td>
							<td align="center" valign="top">106.4</td>
							<td align="center" valign="top">104.8</td>
							<td align="center" valign="top">1.6</td>
							<td align="center" valign="top">0.2</td>
							<td align="center" valign="top">0.0</td>
							<td align="center" valign="top">0.5</td>
						</tr>
						<tr>
							<td align="center" valign="top">R<sub>19</sub>
							</td>
							<td align="center" valign="top">0</td>
							<td align="center" valign="top">0</td>
							<td align="center" valign="top">0</td>
							<td align="center" valign="top">103.8</td>
							<td align="center" valign="top">104.8</td>
							<td align="center" valign="top">−1.0</td>
							<td align="center" valign="top">0.2</td>
							<td align="center" valign="top">0.0</td>
							<td align="center" valign="top">−0.3</td>
						</tr>
						<tr>
							<td align="center" valign="top">R<sub>20</sub>
							</td>
							<td align="center" valign="top">0</td>
							<td align="center" valign="top">0</td>
							<td align="center" valign="top">0</td>
							<td align="center" valign="top">104.9</td>
							<td align="center" valign="top">104.8</td>
							<td align="center" valign="top">0.1</td>
							<td align="center" valign="top">0.2</td>
							<td align="center" valign="top">0.0</td>
							<td align="center" valign="top">0.0</td>
						</tr>
						<tr>
							<td colspan="10" align="left" valign="top">
								<hr/>
							</td>
						</tr>
						<tr>
							<td colspan="10" align="center" valign="bottom">
								<bold>Model with Only Significant Terms (<xref ref-type="disp-formula" rid="FD5">Equation 5</xref>)</bold>
							</td>
						</tr>
						<tr>
							<td colspan="10" align="left" valign="bottom">
								<hr/>
							</td>
						</tr>
						<tr>
							<td align="center" valign="top">R<sub>4</sub>
							</td>
							<td align="center" valign="top">1</td>
							<td align="center" valign="top">1</td>
							<td align="center" valign="top">−1</td>
							<td align="center" valign="top">70.8</td>
							<td align="center" valign="top">74.8</td>
							<td align="center" valign="top">−4.0</td>
							<td align="center" valign="top">0.6</td>
							<td align="center" valign="top">0.9</td>
							<td align="center" valign="top">
								<bold>−4.7</bold>
							</td>
						</tr>
						<tr>
							<td align="center" valign="top">R<sub>8</sub>
							</td>
							<td align="center" valign="top">1</td>
							<td align="center" valign="top">1</td>
							<td align="center" valign="top">1</td>
							<td align="center" valign="top">86.2</td>
							<td align="center" valign="top">83.2</td>
							<td align="center" valign="top">2.3</td>
							<td align="center" valign="top">0.5</td>
							<td align="center" valign="top">0.5</td>
							<td align="center" valign="top">
								<bold>2.4</bold>
							</td>
						</tr>
						<tr>
							<td align="center" valign="top">R<sub>14</sub>
							</td>
							<td align="center" valign="top">0</td>
							<td align="center" valign="top">0</td>
							<td align="center" valign="top">1.52</td>
							<td align="center" valign="top">75.5</td>
							<td align="center" valign="top">77.5</td>
							<td align="center" valign="top">−2.0</td>
							<td align="center" valign="top">0.6</td>
							<td align="center" valign="top">0.5</td>
							<td align="center" valign="top">
								<bold>−2.2</bold>
							</td>
						</tr>
					</tbody>
				</table>
			</table-wrap>
			<table-wrap id="t4-ijms-11-04726" position="float">
				<label>Table 4.</label>
				<caption>
					<p>Biomass and HS production of HRs cultivated in B5 control medium or B5-OP medium after the 28th day of culture</p>
				</caption>
				<table frame="hsides" rules="groups">
					<thead>
						<tr>
							<th colspan="2" align="left" valign="middle" rowspan="5"/>
							<th align="center" valign="middle" rowspan="5">
								<bold>Biomass (g DW/L)</bold>
							</th>
							<th colspan="4" align="center" valign="middle">
								<bold>Production of HS</bold>
							</th>
						</tr>
						<tr>
							<th colspan="4" align="center" valign="middle">
								<hr/>
							</th>
						</tr>
						<tr>
							<th colspan="2" align="center" valign="middle">
								<bold>(mg/g DW)</bold>
							</th>
							<th colspan="2" align="center" valign="middle">
								<bold>(mg/L)</bold>
							</th>
						</tr>
						<tr>
							<th colspan="4" align="center" valign="middle">
								<hr/>
							</th>
						</tr>
						<tr>
							<th align="center" valign="middle">
								<bold>Without Elicitation</bold>
							</th>
							<th align="center" valign="middle">
								<bold>With Elicitation</bold>
							</th>
							<th align="center" valign="middle">
								<bold>Without Elicitation</bold>
							</th>
							<th align="center" valign="middle">
								<bold>With Elicitation</bold>
							</th>
						</tr>
					</thead>
					<tbody>
						<tr>
							<td colspan="2" align="left" valign="top">B5 <bold>
									<xref ref-type="table-fn" rid="tfn1-ijms-11-04726">*</xref>
								</bold>
							</td>
							<td align="center" valign="top">8.4 ± 0.6</td>
							<td align="center" valign="top">2.1 ± 0.1</td>
							<td align="center" valign="top">4.2 ± 0.6</td>
							<td align="center" valign="top">17.6 ± 1.6</td>
							<td align="center" valign="top">35.3 ± 2.0</td>
						</tr>
						<tr>
							<td colspan="2" align="left" valign="top">B5-OP <bold>
									<xref ref-type="table-fn" rid="tfn2-ijms-11-04726">**</xref>
								</bold>
							</td>
							<td align="center" valign="top">12.7 ± 0.2</td>
							<td align="center" valign="top">3.8 ± 0.1</td>
							<td align="center" valign="top">8.5 ± 0.3</td>
							<td align="center" valign="top">48.3 ± 2.3</td>
							<td align="center" valign="top">110.3 ± 1.4</td>
						</tr>
						<tr>
							<td colspan="2" align="left" valign="top">Optimization</td>
							<td align="center" valign="top">51.2%</td>
							<td align="center" valign="top">81%</td>
							<td align="center" valign="top">101.2%</td>
							<td align="center" valign="top">173.6%</td>
							<td align="center" valign="top">212.7%</td>
						</tr>
						<tr>
							<td colspan="7" align="left" valign="top">
								<hr/>
							</td>
						</tr>
						<tr>
							<td align="left" valign="middle" rowspan="5">LSD test</td>
							<td align="left" valign="top">differences</td>
							<td align="center" valign="top">−4.3</td>
							<td align="center" valign="top">−1.7</td>
							<td align="center" valign="top">−4.3</td>
							<td align="center" valign="top">−30.6</td>
							<td align="center" valign="top">−75.0</td>
						</tr>
						<tr>
							<td colspan="6" align="left" valign="top">
								<hr/>
							</td>
						</tr>
						<tr>
							<td align="left" valign="top">±limits</td>
							<td align="center" valign="top">0.9</td>
							<td align="center" valign="top">0.2</td>
							<td align="center" valign="top">0.8</td>
							<td align="center" valign="top">4.4</td>
							<td align="center" valign="top">13.8</td>
						</tr>
						<tr>
							<td colspan="6" align="left" valign="top">
								<hr/>
							</td>
						</tr>
						<tr>
							<td align="left" valign="top">significance</td>
							<td align="center" valign="top">significant</td>
							<td align="center" valign="top">significant</td>
							<td align="center" valign="top">significant</td>
							<td align="center" valign="top">significant</td>
							<td align="center" valign="top">significant</td>
						</tr>
					</tbody>
				</table>
				<table-wrap-foot>
					<fn id="tfn1-ijms-11-04726">
						<label>*:</label>
						<p>B5 control (25 mM NO<sub>3</sub>
							<sup>−</sup>, 1.0 mM Ca<sup>2+</sup> and 3% sucrose);</p>
					</fn>
					<fn id="tfn2-ijms-11-04726">
						<label>**:</label>
						<p>B5-OP optimized (79.1 mM NO<sub>3</sub>
							<sup>−</sup>, 11.4 mM Ca<sup>2+</sup> and 42.9% sucrose).</p>
					</fn>
				</table-wrap-foot>
			</table-wrap>
		</sec>
	</back>
</article>
