Next Article in Journal
Selenazolinium Salts as “Small Molecule Catalysts” with High Potency against ESKAPE Bacterial Pathogens
Previous Article in Journal
Studies on the Inclusion Complexes of Daidzein with β-Cyclodextrin and Derivatives
Article Menu
Issue 12 (December) cover image

Export Article

Open AccessTechnical Note
Molecules 2017, 22(12), 2182; doi:10.3390/molecules22122182

An Efficient PCR-RFLP Method for the Rapid Identification of Korean Pyropia Species

1,†
,
2,†
and
1,*
1
Jeonnam Institute of Natural Resources Research, Jangheung-gun, Jeollanamdo 59338, Korea
2
Ocean & Fisheries Science Institute Haenam Branch, Haenam-gun 59046, Jeollanamdo, Korea
These authors contributed equally to this work.
*
Author to whom correspondence should be addressed.
Received: 28 November 2017 / Revised: 4 December 2017 / Accepted: 4 December 2017 / Published: 8 December 2017
(This article belongs to the Section Molecular Diversity)
View Full-Text   |   Download PDF [1733 KB, uploaded 14 December 2017]   |  

Abstract

The present study utilizes polymerase chain reaction-restriction fragment length polymorphism (PCR-RFLP) analysis using partial plastid rbcL and mitochondrial trnC–trnP gene sequences to distinguish the six representative Pyropia species produced via mariculture in Korea. The rbcL, trnC, and trnP sequences of 15 Pyropia species from the NCBI database were aligned to determine specific restriction enzyme sites of the six Pyropia species. To confirm the presence of restriction sites of eight enzymes, PCR amplicons were digested as follows: a 556 bp fragment within the rbcL region of chloroplast DNA was confirmed in P. yezoensis using BglI, whereas Tth111I, AvaII, BsrI, and BsaAI enzymes produced fragments of 664, 271, 600, and 510 bp, respectively, from the rps11–trnG region of mitochondrial DNA in P. seriata, P. dentata, P. suborbiculata, and P. haitanensis. In the case of P. pseudolinearis, HindIII, SacII, and SphI enzymes each had two cleavage sites, at positions 174 and 825, 788 and 211, and 397 and 602 bp, respectively. All six species were successfully distinguished using these eight restriction enzymes. Therefore, we propose that PCR-RFLP analysis is an efficient tool for the potential use of distinguishing between the six Pyropia species cultivated via mariculture in Korea. View Full-Text
Keywords: Pyropia; PCR-RFLP; rbcL; rps11–trnG Pyropia; PCR-RFLP; rbcL; rps11–trnG
Figures

Figure 1

This is an open access article distributed under the Creative Commons Attribution License which permits unrestricted use, distribution, and reproduction in any medium, provided the original work is properly cited. (CC BY 4.0).

Share & Cite This Article

MDPI and ACS Style

Kim, Y.; Choi, S.-J.; Choi, C. An Efficient PCR-RFLP Method for the Rapid Identification of Korean Pyropia Species. Molecules 2017, 22, 2182.

Show more citation formats Show less citations formats

Note that from the first issue of 2016, MDPI journals use article numbers instead of page numbers. See further details here.

Related Articles

Article Metrics

Article Access Statistics

1

Comments

[Return to top]
Molecules EISSN 1420-3049 Published by MDPI AG, Basel, Switzerland RSS E-Mail Table of Contents Alert
Back to Top