Next Article in Journal
Effect of Counterion and Configurational Entropy on the Surface Tension of Aqueous Solutions of Ionic Surfactant and Electrolyte Mixtures
Previous Article in Journal
Entropy of Bounding Tori
Previous Article in Special Issue
On the Structural Non-identifiability of Flexible Branched Polymers
Article Menu

Export Article

Open AccessReview
Entropy 2010, 12(4), 961-982; doi:10.3390/e12040961

Influence of Conformational Entropy on the Protein Folding Rate

Institute of Protein Research, Russian Academy of Sciences, 142290 Pushchino, Moscow Region, Russia
Received: 30 December 2009 / Revised: 15 March 2010 / Accepted: 30 March 2010 / Published: 16 April 2010
(This article belongs to the Special Issue Entropies of Polymers)
View Full-Text   |   Download PDF [939 KB, uploaded 24 February 2015]   |  

Abstract

One of the most important questions in molecular biology is what determines folding pathways: native structure or protein sequence. There are many proteins that have similar structures but very different sequences, and a relevant question is whether such proteins have similar or different folding mechanisms. To explain the differences in folding rates of various proteins, the search for the factors affecting the protein folding process goes on. Here, based on known experimental data, and using theoretical modeling of protein folding based on a capillarity model, we demonstrate that the relation between the average conformational entropy and the average energy of contacts per residue, that is the entropy capacity, will determine the possibility of the given chain to fold to a particular topology. The difference in the folding rate for proteins sharing more ball-like and less ball-like folds is the result of differences in the conformational entropy due to a larger surface of the boundary between folded and unfolded phases in the transition state for proteins with a more ball-like fold. The result is in agreement with the experimental folding rates for 67 proteins. Proteins with high or low side chain entropy would have extended unfolded regions and would require some additional agents for complete folding. Such proteins are common in nature, and their structural properties are of biological importance.
Keywords: native topology; conformational entropy; protein stability; folding rate; energy of residue-residue contacts native topology; conformational entropy; protein stability; folding rate; energy of residue-residue contacts
This is an open access article distributed under the Creative Commons Attribution License (CC BY 3.0).

Scifeed alert for new publications

Never miss any articles matching your research from any publisher
  • Get alerts for new papers matching your research
  • Find out the new papers from selected authors
  • Updated daily for 49'000+ journals and 6000+ publishers
  • Define your Scifeed now

SciFeed Share & Cite This Article

MDPI and ACS Style

Galzitskaya, O.V. Influence of Conformational Entropy on the Protein Folding Rate. Entropy 2010, 12, 961-982.

Show more citation formats Show less citations formats

Related Articles

Article Metrics

Article Access Statistics

1

Comments

[Return to top]
Entropy EISSN 1099-4300 Published by MDPI AG, Basel, Switzerland RSS E-Mail Table of Contents Alert
Back to Top