modcell2¶
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cont_jaccard
(v1, v2, tol)¶ Number of common elements between two vectors, under a given tolerance. Vectors must be of the same dimensions.
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create_problem_directory
(problem_name, parent_directory)¶ Creates directory and subdirectory for a modcell problem.
Parameters: - problem_name (string) –
- parent_directory (string,optional) – If not provided the $modcell2/problems directory will be used.
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load_prodnet
(problem_name)¶ Load production network ensuring that the problem_path field is correct
Parameters: problem_name (string) –
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solve_lp
(cmodel, LP_SOLVER)¶ Solve a linear programming problem
Parameters: - cmodel (cobra model) –
- LP_SOLVER (str) – options are ‘gurobi’, ‘glpk’, and ‘linprog’.
Returns: - r (vector) – optimal reaction flux vector. Note that unfeasible solutions return an r of zeros.
- status (integer) – 1 optimal solution, 0 non-optimal/infeasible solution.